Prupe.1G531400_v2.0.a1
MADS Family

MADS-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000389
Physical Location & Seq
Forward (+)
43444855 .. 43453102
8248 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G531400.1

Sequence Viewer

Length: 714 bp
ATGGTGAAGATGATGAGGAAGAAGATCAAGATCAAGAAGATTGATTACTTGCCTGCAAGGCAGGTGACCTTCTCAAAGAGGAGAAGAGGGATCTTCAAGAAAGCTGCAGAGCTATCTGTTCTGTGTGAATCTAAGGTGGCAGTTGTCATATTTTCTGCTACTGGCAAACTTTTTGATTATTCCAGCTCAAGTATCAAGGATGTTATTGAAAGGTACAAAGCACACACAAATGGTGTCGAAAAATCGGACAAACCGTCTGTTGAGCTACAGCTAGAGAATGAAAACCAAATCGGATTGAGCAAGGAACTCAAGGAGAAGAGCCACCAGCTGAGGCAGATGAAAGCAGAGGATCTTGAAGAGCTGAATTTTGATGAGTTGCAGAAGTTAGAACAACTGGTGGACGCAAGCCTTGGCCGTGTGATTGAAACTAAGGAAGAACTGAGAATGAGTGAGATTATGGCACTTGAAAGAAAGGGAGCTGAGCTGGTAGAAGCCAACAACCAGCTAAGGCAGACGATGATGTTATCCGGAGGAAATACTGGACCTACGCTTATGGAACCGGAGAGGTTGAGTAATAATATTGGAGGTGGAGGAGAAGAAGAAGGCATGTCATCTGAATCTGCTATCTCCACCACCTGCAATAGTGCTCTCAGTCTCTCTCCCTCTCTTGGAGATGACTCCGACGACGTCACTTTATCTCTCAAACTGGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000060 GO:0000900 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006417 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0007275 GO:0008104 GO:0008150 GO:0009266 GO:0009628 GO:0009719 GO:0009725 GO:0009739 GO:0009791 GO:0009888 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009908 GO:0009909 GO:0009910 GO:0010033 GO:0010073 GO:0010074 GO:0010077 GO:0010219 GO:0010220 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0015031 GO:0015833 GO:0017038 GO:0017148 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0030371 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0033036 GO:0033365 GO:0033993 GO:0034248 GO:0034249 GO:0034504 GO:0034613 GO:0040034 GO:0042221 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045182 GO:0045184 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046907 GO:0046982 GO:0046983 GO:0048367 GO:0048438 GO:0048506 GO:0048507 GO:0048509 GO:0048510 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048581 GO:0048583 GO:0048584 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051169 GO:0051170 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051234 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051254 GO:0051641 GO:0051649 GO:0060255 GO:0061458 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0080090 GO:0080134 GO:0090079 GO:0090567 GO:0097159 GO:0098727 GO:0140110 GO:1901363 GO:1901700 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418
Pfam Domains
Protein Families
K-box SRF-TF

Protein Analysis

238

Amino Acids

26.32

Weight (kDa)

5.69

Isoelectric Point (pI)

45.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000389)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g03630 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_5g35400 FvH4_5g35400 FvH4_5g35400 FvH4_5g35400 FvH4_5g35401 FvH4_5g35401
malus_domestica MD08G1196900.v1.1 MD08G1197000.v1.1 MD08G1197200.v1.1 MD08G1197300.v1.1 MD15G1384500.v1.1 MD15G1384600.v1.1
prunus_persica Prupe.1G531100_v2.0.a1 Prupe.1G531100_v2.0.a1 Prupe.1G531400_v2.0.a1 Prupe.1G531600_v2.0.a1 Prupe.1G531700_v2.0.a1
pyrus_communis pycom08g16910 pycom08g16940 pycom08g16960 pycom15g34480 pycom15g34490
rosa_chinensis RchiOBHm_Chr4g0434911 RchiOBHm_Chr7g0205051 RchiOBHm_Chr7g0205061 RchiOBHm_Chr7g0205071 RchiOBHm_Chr7g0236801 RchiOBHm_Chr7g0236811
rosa_laevigata RLG00000001060 RLG00000003404 RLG00000003405 RLG00000006636
rosa_multiflora Rmu_sc0008447.1_g000001 Rmu_sc0008851.1_g000011 Rmu_sc0008851.1_g000015
rosa_roxburghii Rroxscaffold_3G00224810 Rroxscaffold_3G00224820 Rroxscaffold_3G00252600 Rroxscaffold_5G00376120
rosa_rugosa Rorug04G0280500 Rorug04G0280600 Rorug04G0280700 Rorug04G0280800 Rorug04G0280900 Rorug04G0281000 Rorug04G0281100 Rorug07G0087100 Rorug07G0087200 Rorug07G0087200 Rorug07G0087300 Rorug07G0299300 Rorug07G0299400 Rorug07G0299500
rosa_samantha Rh4AG336000 Rh4BG344500 Rh4CG358900 Rh4DG338500 Rh7AG218200 Rh7AG218300 Rh7AG454500 Rh7AG454700 Rh7BG214900 Rh7BG224100 Rh7BG425700 Rh7BG425800 Rh7BG425900 Rh7CG231500 Rh7CG473200 Rh7CG473300 Rh7DG225600 Rh7DG225800 Rh7DG442500 Rh7DG442600
rosa_wichuraiana Rw4G029320 Rw7G018890 Rw7G018930 Rw7G037730 Rw7G037740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 52, 644
AatII GACGTC 1 cut(s) 690
Acc36I ACCTGC 2 cut(s) 52, 644
AccIII TCCGGA 1 cut(s) 527
AclWI GGATC 2 cut(s) 98, 357
AcoI YGGCCR 1 cut(s) 412
AcsI RAATTY 1 cut(s) 364
AcyI GRCGYC 1 cut(s) 687
AfaI GTAC 1 cut(s) 215
AfiI CCNNNNNNNGG 1 cut(s) 668
AgsI TTSAA 5 cut(s) 97, 209, 356, 425, 467
AhdI GACNNNNNGTC 1 cut(s) 253
Alw21I GWGCWC 1 cut(s) 649
Alw26I GTCTC 1 cut(s) 659
AlwI GGATC 2 cut(s) 98, 357
Aor13HI TCCGGA 1 cut(s) 527
AoxI GGCC 1 cut(s) 412
ApeKI GCWGC 1 cut(s) 104
ApoI RAATTY 1 cut(s) 364
AspS9I GGNCC 1 cut(s) 542
AsuHPI GGTGA 2 cut(s) 16, 76
AvaII GGWCC 1 cut(s) 542
BarI GAAGNNNNNNTAC 2 cut(s) 29, 61
Bbv12I GWGCWC 1 cut(s) 649
BbvCI CCTCAGC 1 cut(s) 329
BbvI GCAGC 1 cut(s) 91
BceAI ACGGC 1 cut(s) 399
BcoDI GTCTC 1 cut(s) 659
BfaI CTAG 1 cut(s) 272
BfmI CTRYAG 2 cut(s) 105, 266
BfuAI ACCTGC 2 cut(s) 52, 644
BglI GCCNNNNNGGC 1 cut(s) 58
BisI GCNGC 1 cut(s) 105
BlpI GCTNAGC 1 cut(s) 480
BlsI GCNGC 1 cut(s) 106
Bme18I GGWCC 1 cut(s) 542
BmeRI GACNNNNNGTC 1 cut(s) 253
BmgT120I GGNCC 1 cut(s) 542
BmiI GGNNCC 1 cut(s) 558
Bpu10I CCTNAGC 2 cut(s) 329, 506
Bpu1102I GCTNAGC 1 cut(s) 480
BpuEI CTTGAG 2 cut(s) 172, 293
BsaBI GATNNNNATC 1 cut(s) 29
BsaHI GRCGYC 1 cut(s) 687
BsaJI CCNNGG 1 cut(s) 409
BsaWI WCCGGW 2 cut(s) 527, 559
Bsc4I CCNNNNNNNGG 1 cut(s) 668
Bse1I ACTGG 4 cut(s) 166, 399, 544, 711
Bse8I GATNNNNATC 1 cut(s) 29
BseAI TCCGGA 1 cut(s) 527
BseDI CCNNGG 1 cut(s) 409
BseGI GGATG 1 cut(s) 205
BseJI GATNNNNATC 1 cut(s) 29
BseLI CCNNNNNNNGG 1 cut(s) 668
BseMII CTCAG 4 cut(s) 320, 431, 471, 664
BseNI ACTGG 4 cut(s) 166, 399, 544, 711
BseRI GAGGAG 2 cut(s) 94, 606
BseXI GCAGC 1 cut(s) 91
BshFI GGCC 1 cut(s) 414
BsiHKAI GWGCWC 1 cut(s) 649
BsiSI CCGG 2 cut(s) 528, 560
BslI CCNNNNNNNGG 1 cut(s) 668
BsmAI GTCTC 1 cut(s) 659
BsnI GGCC 1 cut(s) 414
Bsp1286I GDGCHC 1 cut(s) 649
Bsp13I TCCGGA 1 cut(s) 527
Bsp143I GATC 4 cut(s) 24, 30, 90, 349
Bsp1720I GCTNAGC 1 cut(s) 480
BspANI GGCC 1 cut(s) 414
BspCNI CTCAG 4 cut(s) 321, 432, 472, 663
BspEI TCCGGA 1 cut(s) 527
BspLI GGNNCC 1 cut(s) 558
BspMAI CTGCAG 1 cut(s) 109
BspMI ACCTGC 2 cut(s) 52, 644
BspPI GGATC 2 cut(s) 98, 357
BspQI GCTCTTC 2 cut(s) 311, 351
BsrI ACTGG 4 cut(s) 166, 399, 544, 711
BssECI CCNNGG 1 cut(s) 409
BssMI GATC 4 cut(s) 24, 30, 90, 349
BssNI GRCGYC 1 cut(s) 687
BssT1I CCWWGG 1 cut(s) 409
Bst4CI ACNGT 1 cut(s) 255
Bst6I CTCTTC 3 cut(s) 79, 311, 351
BstACI GRCGYC 1 cut(s) 687
BstC8I GCNNGC 2 cut(s) 54, 406
BstDEI CTNAG 7 cut(s) 132, 329, 429, 440, 480, 506, 650
BstEII GGTNACC 1 cut(s) 64
BstF5I GGATG 1 cut(s) 205
BstKTI GATC 4 cut(s) 27, 33, 93, 352
BstMAI GTCTC 1 cut(s) 659
BstMBI GATC 4 cut(s) 24, 30, 90, 349
BstMWI GCNNNNNNNGC 1 cut(s) 58
BstNSI RCATGY 1 cut(s) 610
BstPI GGTNACC 1 cut(s) 64
BstSFI CTRYAG 2 cut(s) 105, 266
BstV1I GCAGC 1 cut(s) 91
BstX2I RGATCY 2 cut(s) 90, 349
BstYI RGATCY 2 cut(s) 90, 349
BsuRI GGCC 1 cut(s) 414
BtsCI GGATG 1 cut(s) 205
BveI ACCTGC 2 cut(s) 52, 644
Cac8I GCNNGC 2 cut(s) 54, 406
Cfr13I GGNCC 1 cut(s) 542
CseI GACGC 1 cut(s) 410
Csp6I GTAC 1 cut(s) 214
CviAII CATG 1 cut(s) 607
CviQI GTAC 1 cut(s) 214
DdeI CTNAG 7 cut(s) 132, 329, 429, 440, 480, 506, 650
DpnI GATC 4 cut(s) 26, 32, 92, 351
DpnII GATC 4 cut(s) 24, 30, 90, 349
DriI GACNNNNNGTC 1 cut(s) 253
EaeI YGGCCR 1 cut(s) 412
Eam1104I CTCTTC 3 cut(s) 79, 311, 351
Eam1105I GACNNNNNGTC 1 cut(s) 253
EarI CTCTTC 3 cut(s) 79, 311, 351
Eco130I CCWWGG 1 cut(s) 409
Eco47I GGWCC 1 cut(s) 542
Eco91I GGTNACC 1 cut(s) 64
EcoO65I GGTNACC 1 cut(s) 64
EcoT14I CCWWGG 1 cut(s) 409
ErhI CCWWGG 1 cut(s) 409
FaeI CATG 1 cut(s) 610
FaiI YATR 4 cut(s) 149, 458, 554, 608
FatI CATG 1 cut(s) 606
Fnu4HI GCNGC 1 cut(s) 105
FokI GGATG 1 cut(s) 212
Fsp4HI GCNGC 1 cut(s) 105
FspBI CTAG 1 cut(s) 272
GluI GCNGC 1 cut(s) 105
HaeIII GGCC 1 cut(s) 414
HapII CCGG 2 cut(s) 528, 560
HgaI GACGC 1 cut(s) 410
Hin1I GRCGYC 1 cut(s) 687
Hin1II CATG 1 cut(s) 610
HinfI GANTC 3 cut(s) 128, 617, 677
HpaII CCGG 2 cut(s) 528, 560
HphI GGTGA 2 cut(s) 16, 76
Hpy166II GTNNAC 1 cut(s) 400
Hpy188I TCNGA 4 cut(s) 247, 293, 616, 682
Hpy188III TCNNGA 5 cut(s) 28, 34, 97, 353, 528
Hpy8I GTNNAC 1 cut(s) 400
Hpy99I CGWCG 2 cut(s) 686, 689
HpyAV CCTTC 2 cut(s) 79, 596
HpyCH4III ACNGT 1 cut(s) 255
HpyCH4IV ACGT 1 cut(s) 687
HpyCH4V TGCA 4 cut(s) 56, 107, 379, 639
HpyF10VI GCNNNNNNNGC 1 cut(s) 58
HpyF3I CTNAG 7 cut(s) 132, 329, 429, 440, 480, 506, 650
HpySE526I ACGT 1 cut(s) 687
Hsp92I GRCGYC 1 cut(s) 687
Hsp92II CATG 1 cut(s) 610
Kpn2I TCCGGA 1 cut(s) 527
Kzo9I GATC 4 cut(s) 24, 30, 90, 349
LguI GCTCTTC 2 cut(s) 311, 351
LmnI GCTCC 1 cut(s) 476
Lsp1109I GCAGC 1 cut(s) 91
MaeI CTAG 1 cut(s) 272
MaeII ACGT 1 cut(s) 687
MaeIII GTNAC 2 cut(s) 64, 688
MalI GATC 4 cut(s) 26, 32, 92, 351
MboI GATC 4 cut(s) 24, 30, 90, 349
MflI RGATCY 2 cut(s) 90, 349
MhlI GDGCHC 1 cut(s) 649
MluCI AATT 1 cut(s) 364
MlyI GAGTC 1 cut(s) 671
MmeI TCCRAC 1 cut(s) 705
MroI TCCGGA 1 cut(s) 527
MslI CAYNNNNRTG 1 cut(s) 228
MspA1I CMGCKG 1 cut(s) 328
MspI CCGG 2 cut(s) 528, 560
MwoI GCNNNNNNNGC 1 cut(s) 58
NdeII GATC 4 cut(s) 24, 30, 90, 349
NlaIII CATG 1 cut(s) 610
NlaIV GGNNCC 1 cut(s) 558
NmuCI GTSAC 2 cut(s) 64, 688
NspI RCATGY 1 cut(s) 610
PaqCI CACCTGC 2 cut(s) 52, 644
PciSI GCTCTTC 2 cut(s) 311, 351
PcsI WCGNNNNNNNCGW 1 cut(s) 251
PfeI GAWTC 2 cut(s) 128, 617
PflFI GACNNNGTC 1 cut(s) 686
PkrI GCNGC 1 cut(s) 106
PleI GAGTC 1 cut(s) 671
PpsI GAGTC 1 cut(s) 671
PspEI GGTNACC 1 cut(s) 64
PspN4I GGNNCC 1 cut(s) 558
PspPI GGNCC 1 cut(s) 542
PstI CTGCAG 1 cut(s) 109
PsuI RGATCY 2 cut(s) 90, 349
PsyI GACNNNGTC 1 cut(s) 686
PvuII CAGCTG 1 cut(s) 328
RsaI GTAC 1 cut(s) 215
RsaNI GTAC 1 cut(s) 214
RseI CAYNNNNRTG 1 cut(s) 228
SapI GCTCTTC 2 cut(s) 311, 351
SatI GCNGC 1 cut(s) 105
Sau3AI GATC 4 cut(s) 24, 30, 90, 349
Sau96I GGNCC 1 cut(s) 542
SchI GAGTC 1 cut(s) 671
SduI GDGCHC 1 cut(s) 649
SfcI CTRYAG 2 cut(s) 105, 266
SinI GGWCC 1 cut(s) 542
SmiMI CAYNNNNRTG 1 cut(s) 228
SmlI CTYRAG 2 cut(s) 187, 308
SmoI CTYRAG 2 cut(s) 187, 308
Sse9I AATT 1 cut(s) 364
SspI AATATT 1 cut(s) 580
SspMI CTAG 1 cut(s) 272
StyI CCWWGG 1 cut(s) 409
TaaI ACNGT 1 cut(s) 255
TaiI ACGT 1 cut(s) 690
TaqI TCGA 1 cut(s) 237
TasI AATT 1 cut(s) 364
TfiI GAWTC 2 cut(s) 128, 617
TseFI GTSAC 2 cut(s) 64, 688
TseI GCWGC 1 cut(s) 104
Tsp45I GTSAC 2 cut(s) 64, 688
TspDTI ATGAA 2 cut(s) 294, 353
Tth111I GACNNNGTC 1 cut(s) 686
VpaK11BI GGWCC 1 cut(s) 542
XapI RAATTY 1 cut(s) 364
XceI RCATGY 1 cut(s) 610
XspI CTAG 1 cut(s) 272
ZraI GACGTC 1 cut(s) 688
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.