MD15G1384500.v1.1
MADS Family

MADS-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0000389
Physical Location & Seq
Reverse (-)
47460406 .. 47476439
16034 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1384500.v1.1.491

Sequence Viewer

Length: 684 bp
ATGAAGATCAAGATAAAAAAGATCGACTACTTGCCGGCAAGGCAGGTGACCTTCTCAAAGAGGAGAAGGGGGATTTTCAAGAAAGCTGGAGAGCTGTCGATTCTGTGTGAATCTGAAGTTGCTGTTATCATCTTTTCTCAAACTGGCAAGCTCTTTGATTTCTCAAGCTCCAGCACCAAGGATGTGATTGCAAGGTACAATTCACATATCGGTGGGGAAAAATCGGATCAACCCACGATTCATCAGCTACAGTTGGAGAAAGAAAACAATATCAGGCTGAGGAAGGAACTTGAGGATAAGAGTTGCAAGTTGAGGCAGATGAAGGGTGTGGACCTTGAAGACTTGGATCTGGATGAACTACAGAAGTTAGAAAAATTGGTGGAAGCAAGCCTTGGCCGTGTGATTCAAACTAAGGAAGAAAAGATTATGAGTGAGGTTATGGCACTTGAGAAAAAGGGAGCTGAGCTGATAGAAGCTAACAACCAGCTAAGCCACAGGATGGTGATGTATCCCAGAGGAGATATCGGACCGGAGGCCATCCTGGAGTTGGAAAACCTGAATAATATTGGAGAAGAAAGCATGACATCTGAATCAACCACAAATGTCACCACCTGCTCCAACAGCTCTCTTTCCCTTGAAGATGATTGCTCCGACATCTTGTCTCTCAAACTGGGTCTTCCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000060 GO:0000900 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006417 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0007275 GO:0008104 GO:0008150 GO:0009266 GO:0009628 GO:0009719 GO:0009725 GO:0009739 GO:0009791 GO:0009888 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009908 GO:0009909 GO:0009910 GO:0010033 GO:0010073 GO:0010074 GO:0010077 GO:0010219 GO:0010220 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0015031 GO:0015833 GO:0017038 GO:0017148 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0030371 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0033036 GO:0033365 GO:0033993 GO:0034248 GO:0034249 GO:0034504 GO:0034613 GO:0040034 GO:0042221 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045182 GO:0045184 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046907 GO:0046982 GO:0046983 GO:0048367 GO:0048438 GO:0048506 GO:0048507 GO:0048509 GO:0048510 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048581 GO:0048583 GO:0048584 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051169 GO:0051170 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051234 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051254 GO:0051641 GO:0051649 GO:0060255 GO:0061458 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0080090 GO:0080134 GO:0090079 GO:0090567 GO:0097159 GO:0098727 GO:0140110 GO:1901363 GO:1901700 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418
Pfam Domains
Protein Families
K-box SRF-TF

Protein Analysis

228

Amino Acids

25.56

Weight (kDa)

5.46

Isoelectric Point (pI)

46.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 13 - 54 4.5e-22 SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box PF01486 82 - 167 1.8e-12 K-box region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000389)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g03630 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_5g35400 FvH4_5g35400 FvH4_5g35400 FvH4_5g35400 FvH4_5g35401 FvH4_5g35401
malus_domestica MD08G1196900.v1.1 MD08G1197000.v1.1 MD08G1197200.v1.1 MD08G1197300.v1.1 MD15G1384500.v1.1 MD15G1384600.v1.1
prunus_persica Prupe.1G531100_v2.0.a1 Prupe.1G531100_v2.0.a1 Prupe.1G531400_v2.0.a1 Prupe.1G531600_v2.0.a1 Prupe.1G531700_v2.0.a1
pyrus_communis pycom08g16910 pycom08g16940 pycom08g16960 pycom15g34480 pycom15g34490
rosa_chinensis RchiOBHm_Chr4g0434911 RchiOBHm_Chr7g0205051 RchiOBHm_Chr7g0205061 RchiOBHm_Chr7g0205071 RchiOBHm_Chr7g0236801 RchiOBHm_Chr7g0236811
rosa_laevigata RLG00000001060 RLG00000003404 RLG00000003405 RLG00000006636
rosa_multiflora Rmu_sc0008447.1_g000001 Rmu_sc0008851.1_g000011 Rmu_sc0008851.1_g000015
rosa_roxburghii Rroxscaffold_3G00224810 Rroxscaffold_3G00224820 Rroxscaffold_3G00252600 Rroxscaffold_5G00376120
rosa_rugosa Rorug04G0280500 Rorug04G0280600 Rorug04G0280700 Rorug04G0280800 Rorug04G0280900 Rorug04G0281000 Rorug04G0281100 Rorug07G0087100 Rorug07G0087200 Rorug07G0087200 Rorug07G0087300 Rorug07G0299300 Rorug07G0299400 Rorug07G0299500
rosa_samantha Rh4AG336000 Rh4BG344500 Rh4CG358900 Rh4DG338500 Rh7AG218200 Rh7AG218300 Rh7AG454500 Rh7AG454700 Rh7BG214900 Rh7BG224100 Rh7BG425700 Rh7BG425800 Rh7BG425900 Rh7CG231500 Rh7CG473200 Rh7CG473300 Rh7DG225600 Rh7DG225800 Rh7DG442500 Rh7DG442600
rosa_wichuraiana Rw4G029320 Rw7G018890 Rw7G018930 Rw7G037730 Rw7G037740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 34, 620
Acc36I ACCTGC 2 cut(s) 34, 620
AccB7I CCANNNNNTGG 1 cut(s) 499
AclWI GGATC 2 cut(s) 234, 354
AcoI YGGCCR 1 cut(s) 394
AcuI CTGAAG 1 cut(s) 135
AfaI GTAC 1 cut(s) 197
AfiI CCNNNNNNNGG 2 cut(s) 499, 547
AgsI TTSAA 4 cut(s) 79, 338, 407, 638
AhdI GACNNNNNGTC 1 cut(s) 658
AjnI CCWGG 1 cut(s) 540
AjuI GAANNNNNNNTTGG 2 cut(s) 375, 407
Alw26I GTCTC 1 cut(s) 666
AlwI GGATC 2 cut(s) 234, 354
AoxI GGCC 2 cut(s) 394, 534
AspS9I GGNCC 2 cut(s) 331, 527
AsuHPI GGTGA 3 cut(s) 58, 514, 598
AvaII GGWCC 2 cut(s) 331, 527
BbsI GAAGAC 2 cut(s) 345, 668
BbvCI CCTCAGC 1 cut(s) 278
BccI CCATC 2 cut(s) 493, 545
BceAI ACGGC 1 cut(s) 381
BciT130I CCWGG 1 cut(s) 542
BciVI GTATCC 1 cut(s) 519
BcoDI GTCTC 1 cut(s) 666
BfmI CTRYAG 2 cut(s) 248, 359
BfuAI ACCTGC 2 cut(s) 34, 620
BfuI GTATCC 1 cut(s) 519
BglI GCCNNNNNGGC 1 cut(s) 40
BlpI GCTNAGC 2 cut(s) 462, 488
Bme1390I CCNGG 1 cut(s) 542
Bme18I GGWCC 2 cut(s) 331, 527
BmeRI GACNNNNNGTC 1 cut(s) 658
BmgT120I GGNCC 2 cut(s) 331, 527
BmrFI CCNGG 1 cut(s) 542
BmrI ACTGGG 1 cut(s) 680
BmuI ACTGGG 1 cut(s) 680
BpiI GAAGAC 2 cut(s) 345, 668
BpmI CTGGAG 3 cut(s) 108, 154, 563
Bpu10I CCTNAGC 1 cut(s) 278
Bpu1102I GCTNAGC 2 cut(s) 462, 488
BpuEI CTTGAG 3 cut(s) 148, 311, 467
BsaJI CCNNGG 2 cut(s) 177, 391
BsaWI WCCGGW 1 cut(s) 529
Bsc4I CCNNNNNNNGG 2 cut(s) 499, 547
Bse118I RCCGGY 1 cut(s) 34
Bse1I ACTGG 2 cut(s) 148, 675
BseBI CCWGG 1 cut(s) 542
BseDI CCNNGG 2 cut(s) 177, 391
BseGI GGATG 4 cut(s) 187, 358, 504, 537
BseLI CCNNNNNNNGG 2 cut(s) 499, 547
BseMII CTCAG 2 cut(s) 269, 453
BseNI ACTGG 2 cut(s) 148, 675
BseRI GAGGAG 2 cut(s) 76, 531
BshFI GGCC 2 cut(s) 396, 536
BsiSI CCGG 2 cut(s) 35, 530
BslI CCNNNNNNNGG 2 cut(s) 499, 547
BsmAI GTCTC 1 cut(s) 666
BsnI GGCC 2 cut(s) 396, 536
Bsp143I GATC 4 cut(s) 6, 21, 226, 346
Bsp1720I GCTNAGC 2 cut(s) 462, 488
BspANI GGCC 2 cut(s) 396, 536
BspCNI CTCAG 2 cut(s) 270, 454
BspMI ACCTGC 2 cut(s) 34, 620
BspPI GGATC 2 cut(s) 234, 354
BsrFI RCCGGY 1 cut(s) 34
BsrI ACTGG 2 cut(s) 148, 675
BssAI RCCGGY 1 cut(s) 34
BssECI CCNNGG 2 cut(s) 177, 391
BssMI GATC 4 cut(s) 6, 21, 226, 346
BssT1I CCWWGG 2 cut(s) 177, 391
Bst2UI CCWGG 1 cut(s) 542
Bst4CI ACNGT 1 cut(s) 252
BstC8I GCNNGC 3 cut(s) 36, 149, 388
BstDEI CTNAG 4 cut(s) 278, 411, 462, 488
BstEII GGTNACC 1 cut(s) 46
BstF5I GGATG 4 cut(s) 187, 358, 504, 537
BstKTI GATC 4 cut(s) 9, 24, 229, 349
BstMAI GTCTC 1 cut(s) 666
BstMBI GATC 4 cut(s) 6, 21, 226, 346
BstMWI GCNNNNNNNGC 2 cut(s) 40, 621
BstNI CCWGG 1 cut(s) 542
BstPI GGTNACC 1 cut(s) 46
BstSCI CCNGG 1 cut(s) 540
BstSFI CTRYAG 2 cut(s) 248, 359
BstV2I GAAGAC 2 cut(s) 345, 668
BstX2I RGATCY 1 cut(s) 346
BstYI RGATCY 1 cut(s) 346
BsuI GTATCC 1 cut(s) 519
BsuRI GGCC 2 cut(s) 396, 536
BtsCI GGATG 4 cut(s) 187, 358, 504, 537
BveI ACCTGC 2 cut(s) 34, 620
Cac8I GCNNGC 3 cut(s) 36, 149, 388
Cfr10I RCCGGY 1 cut(s) 34
Cfr13I GGNCC 2 cut(s) 331, 527
CpoI CGGWCCG 1 cut(s) 527
Csp6I GTAC 1 cut(s) 196
CspI CGGWCCG 1 cut(s) 527
CviAII CATG 1 cut(s) 580
CviQI GTAC 1 cut(s) 196
DdeI CTNAG 4 cut(s) 278, 411, 462, 488
DpnI GATC 4 cut(s) 8, 23, 228, 348
DpnII GATC 4 cut(s) 6, 21, 226, 346
DriI GACNNNNNGTC 1 cut(s) 658
EaeI YGGCCR 1 cut(s) 394
Eam1105I GACNNNNNGTC 1 cut(s) 658
Eco130I CCWWGG 2 cut(s) 177, 391
Eco32I GATATC 1 cut(s) 523
Eco47I GGWCC 2 cut(s) 331, 527
Eco57I CTGAAG 1 cut(s) 135
Eco91I GGTNACC 1 cut(s) 46
EcoO65I GGTNACC 1 cut(s) 46
EcoRII CCWGG 1 cut(s) 540
EcoRV GATATC 1 cut(s) 523
EcoT14I CCWWGG 2 cut(s) 177, 391
ErhI CCWWGG 2 cut(s) 177, 391
FaeI CATG 1 cut(s) 583
FaiI YATR 4 cut(s) 207, 428, 440, 581
FalI AAGNNNNNCTT 2 cut(s) 375, 407
FatI CATG 1 cut(s) 579
FokI GGATG 4 cut(s) 194, 365, 511, 524
GsuI CTGGAG 3 cut(s) 108, 154, 563
HaeIII GGCC 2 cut(s) 396, 536
HapII CCGG 2 cut(s) 35, 530
Hin1II CATG 1 cut(s) 583
HinfI GANTC 5 cut(s) 100, 110, 238, 403, 590
HpaII CCGG 2 cut(s) 35, 530
HphI GGTGA 3 cut(s) 58, 514, 598
Hpy166II GTNNAC 1 cut(s) 331
Hpy188I TCNGA 5 cut(s) 115, 226, 527, 589, 652
Hpy188III TCNNGA 3 cut(s) 10, 79, 350
Hpy8I GTNNAC 1 cut(s) 331
HpyAV CCTTC 4 cut(s) 60, 61, 277, 316
HpyCH4III ACNGT 1 cut(s) 252
HpyCH4V TGCA 2 cut(s) 191, 306
HpyF10VI GCNNNNNNNGC 2 cut(s) 40, 621
HpyF3I CTNAG 4 cut(s) 278, 411, 462, 488
Hsp92II CATG 1 cut(s) 583
KroI GCCGGC 1 cut(s) 34
KroNI GCCGGC 1 cut(s) 36
Kzo9I GATC 4 cut(s) 6, 21, 226, 346
LmnI GCTCC 4 cut(s) 173, 458, 620, 653
MaeIII GTNAC 2 cut(s) 46, 604
MalI GATC 4 cut(s) 8, 23, 228, 348
MboI GATC 4 cut(s) 6, 21, 226, 346
MboII GAAGA 6 cut(s) 16, 350, 428, 584, 650, 668
MflI RGATCY 1 cut(s) 346
MluCI AATT 2 cut(s) 199, 374
MmeI TCCRAC 4 cut(s) 234, 528, 642, 675
MnlI CCTC 7 cut(s) 54, 273, 286, 306, 427, 509, 526
MroNI GCCGGC 1 cut(s) 34
MslI CAYNNNNRTG 1 cut(s) 210
MspI CCGG 2 cut(s) 35, 530
MspR9I CCNGG 1 cut(s) 542
MvaI CCWGG 1 cut(s) 542
MwoI GCNNNNNNNGC 2 cut(s) 40, 621
NaeI GCCGGC 1 cut(s) 36
NdeII GATC 4 cut(s) 6, 21, 226, 346
NgoMIV GCCGGC 1 cut(s) 34
NlaIII CATG 1 cut(s) 583
NmuCI GTSAC 2 cut(s) 46, 604
PaqCI CACCTGC 2 cut(s) 34, 620
PdiI GCCGGC 1 cut(s) 36
PfeI GAWTC 5 cut(s) 100, 110, 238, 403, 590
PflMI CCANNNNNTGG 1 cut(s) 499
PfoI TCCNGGA 1 cut(s) 540
Psp6I CCWGG 1 cut(s) 540
PspEI GGTNACC 1 cut(s) 46
PspGI CCWGG 1 cut(s) 540
PspPI GGNCC 2 cut(s) 331, 527
PsuI RGATCY 1 cut(s) 346
RsaI GTAC 1 cut(s) 197
RsaNI GTAC 1 cut(s) 196
RseI CAYNNNNRTG 1 cut(s) 210
Rsr2I CGGWCCG 1 cut(s) 527
RsrII CGGWCCG 1 cut(s) 527
Sau3AI GATC 4 cut(s) 6, 21, 226, 346
Sau96I GGNCC 2 cut(s) 331, 527
ScrFI CCNGG 1 cut(s) 542
SfcI CTRYAG 2 cut(s) 248, 359
SinI GGWCC 2 cut(s) 331, 527
SmiMI CAYNNNNRTG 1 cut(s) 210
SmlI CTYRAG 3 cut(s) 163, 290, 446
SmoI CTYRAG 3 cut(s) 163, 290, 446
Sse9I AATT 2 cut(s) 199, 374
SspI AATATT 1 cut(s) 565
StyD4I CCNGG 1 cut(s) 540
StyI CCWWGG 2 cut(s) 177, 391
TaaI ACNGT 1 cut(s) 252
TaqI TCGA 2 cut(s) 24, 98
TasI AATT 2 cut(s) 199, 374
TfiI GAWTC 5 cut(s) 100, 110, 238, 403, 590
TseFI GTSAC 2 cut(s) 46, 604
Tsp45I GTSAC 2 cut(s) 46, 604
TspDTI ATGAA 4 cut(s) 17, 230, 335, 369
TspGWI ACGGA 1 cut(s) 669
Van91I CCANNNNNTGG 1 cut(s) 499
VpaK11BI GGWCC 2 cut(s) 331, 527
XcmI CCANNNNNNNNNTGG 1 cut(s) 544
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.