MADS-box protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| UQ_con | PF00179 | 15 - 126 | 2.5e-19 | Ubiquitin-conjugating enzyme |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 517, 887 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 458 |
| AciI | CCGC | 4 cut(s) | 5, 203, 331, 879 |
| AclWI | GGATC | 1 cut(s) | 754 |
| AcsI | RAATTY | 2 cut(s) | 45, 161 |
| AcuI | CTGAAG | 4 cut(s) | 35, 537, 816, 878 |
| AcyI | GRCGYC | 1 cut(s) | 518 |
| AfaI | GTAC | 5 cut(s) | 17, 209, 421, 675, 762 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 109, 458, 547, 743 |
| AflII | CTTAAG | 1 cut(s) | 280 |
| AgsI | TTSAA | 6 cut(s) | 194, 217, 260, 570, 668, 727 |
| AluBI | AGCT | 1 cut(s) | 734 |
| AluI | AGCT | 1 cut(s) | 734 |
| Alw21I | GWGCWC | 2 cut(s) | 309, 636 |
| AlwI | GGATC | 1 cut(s) | 754 |
| Ama87I | CYCGRG | 2 cut(s) | 107, 150 |
| AoxI | GGCC | 2 cut(s) | 145, 767 |
| ApeKI | GCWGC | 3 cut(s) | 313, 647, 818 |
| ApoI | RAATTY | 2 cut(s) | 45, 161 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 116, 148 |
| AspLEI | GCGC | 1 cut(s) | 520 |
| AspS9I | GGNCC | 1 cut(s) | 146 |
| AsuHPI | GGTGA | 2 cut(s) | 537, 593 |
| AvaI | CYCGRG | 2 cut(s) | 107, 150 |
| BanI | GGYRCC | 2 cut(s) | 517, 887 |
| BauI | CACGAG | 1 cut(s) | 438 |
| Bbv12I | GWGCWC | 2 cut(s) | 309, 636 |
| BbvI | GCAGC | 3 cut(s) | 325, 659, 805 |
| BccI | CCATC | 2 cut(s) | 325, 584 |
| BceAI | ACGGC | 2 cut(s) | 20, 875 |
| BciVI | GTATCC | 1 cut(s) | 148 |
| BfaI | CTAG | 1 cut(s) | 876 |
| BfoI | RGCGCY | 1 cut(s) | 521 |
| BfrI | CTTAAG | 1 cut(s) | 280 |
| BfuI | GTATCC | 1 cut(s) | 148 |
| BisI | GCNGC | 3 cut(s) | 314, 648, 819 |
| BlpI | GCTNAGC | 1 cut(s) | 509 |
| BlsI | GCNGC | 3 cut(s) | 315, 649, 820 |
| BmeT110I | CYCGRG | 2 cut(s) | 107, 150 |
| BmgT120I | GGNCC | 1 cut(s) | 146 |
| BmiI | GGNNCC | 3 cut(s) | 519, 613, 889 |
| BmrI | ACTGGG | 1 cut(s) | 633 |
| BmsI | GCATC | 2 cut(s) | 57, 571 |
| BmuI | ACTGGG | 1 cut(s) | 633 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 88, 120, 603, 635 |
| BpmI | CTGGAG | 1 cut(s) | 630 |
| Bpu10I | CCTNAGC | 1 cut(s) | 303 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 509 |
| Bsa29I | ATCGAT | 1 cut(s) | 802 |
| BsaHI | GRCGYC | 1 cut(s) | 518 |
| BsaJI | CCNNGG | 2 cut(s) | 149, 716 |
| BsaWI | WCCGGW | 1 cut(s) | 21 |
| BsaXI | ACNNNNNCTCC | 1 cut(s) | 29 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 109, 458, 547, 743 |
| Bse118I | RCCGGY | 2 cut(s) | 199, 547 |
| Bse1I | ACTGG | 4 cut(s) | 131, 314, 399, 628 |
| Bse3DI | GCAATG | 1 cut(s) | 834 |
| BseCI | ATCGAT | 1 cut(s) | 802 |
| BseDI | CCNNGG | 2 cut(s) | 149, 716 |
| BseGI | GGATG | 2 cut(s) | 298, 562 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 109, 458, 547, 743 |
| BseMI | GCAATG | 1 cut(s) | 834 |
| BseMII | CTCAG | 1 cut(s) | 294 |
| BseNI | ACTGG | 4 cut(s) | 131, 314, 399, 628 |
| BseRI | GAGGAG | 1 cut(s) | 125 |
| BseXI | GCAGC | 3 cut(s) | 325, 659, 805 |
| BseYI | CCCAGC | 2 cut(s) | 31, 643 |
| BshFI | GGCC | 2 cut(s) | 147, 769 |
| BshNI | GGYRCC | 2 cut(s) | 517, 887 |
| BshVI | ATCGAT | 1 cut(s) | 802 |
| BsiHKAI | GWGCWC | 2 cut(s) | 309, 636 |
| BsiHKCI | CYCGRG | 2 cut(s) | 107, 150 |
| BsiSI | CCGG | 3 cut(s) | 22, 200, 548 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 109, 458, 547, 743 |
| BsmI | GAATGC | 2 cut(s) | 356, 697 |
| BsnI | GGCC | 2 cut(s) | 147, 769 |
| BsoBI | CYCGRG | 2 cut(s) | 107, 150 |
| Bsp1286I | GDGCHC | 2 cut(s) | 309, 636 |
| Bsp1407I | TGTACA | 1 cut(s) | 760 |
| Bsp143I | GATC | 2 cut(s) | 746, 799 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 509 |
| BspACI | CCGC | 4 cut(s) | 5, 203, 331, 879 |
| BspANI | GGCC | 2 cut(s) | 147, 769 |
| BspCNI | CTCAG | 1 cut(s) | 295 |
| BspDI | ATCGAT | 1 cut(s) | 802 |
| BspHI | TCATGA | 2 cut(s) | 93, 496 |
| BspLI | GGNNCC | 3 cut(s) | 519, 613, 889 |
| BspPI | GGATC | 1 cut(s) | 754 |
| BspQI | GCTCTTC | 1 cut(s) | 552 |
| BspT107I | GGYRCC | 2 cut(s) | 517, 887 |
| BspTI | CTTAAG | 1 cut(s) | 280 |
| BsrDI | GCAATG | 1 cut(s) | 834 |
| BsrFI | RCCGGY | 2 cut(s) | 199, 547 |
| BsrGI | TGTACA | 1 cut(s) | 760 |
| BsrI | ACTGG | 4 cut(s) | 131, 314, 399, 628 |
| BssAI | RCCGGY | 2 cut(s) | 199, 547 |
| BssECI | CCNNGG | 2 cut(s) | 149, 716 |
| BssMI | GATC | 2 cut(s) | 746, 799 |
| BssNI | GRCGYC | 1 cut(s) | 518 |
| BssSI | CACGAG | 1 cut(s) | 438 |
| BssT1I | CCWWGG | 1 cut(s) | 716 |
| Bst2BI | CACGAG | 1 cut(s) | 438 |
| Bst6I | CTCTTC | 1 cut(s) | 552 |
| BstACI | GRCGYC | 1 cut(s) | 518 |
| BstAFI | CTTAAG | 1 cut(s) | 280 |
| BstAUI | TGTACA | 1 cut(s) | 760 |
| BstC8I | GCNNGC | 2 cut(s) | 201, 329 |
| BstDEI | CTNAG | 3 cut(s) | 303, 509, 909 |
| BstF5I | GGATG | 2 cut(s) | 298, 562 |
| BstH2I | RGCGCY | 1 cut(s) | 521 |
| BstHHI | GCGC | 1 cut(s) | 520 |
| BstKTI | GATC | 2 cut(s) | 749, 802 |
| BstMBI | GATC | 2 cut(s) | 746, 799 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 313, 344, 353 |
| BstV1I | GCAGC | 3 cut(s) | 325, 659, 805 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 377 |
| Bsu15I | ATCGAT | 1 cut(s) | 802 |
| BsuI | GTATCC | 1 cut(s) | 148 |
| BsuRI | GGCC | 2 cut(s) | 147, 769 |
| BsuTUI | ATCGAT | 1 cut(s) | 802 |
| BtsCI | GGATG | 2 cut(s) | 298, 562 |
| BtsIMutI | CAGTG | 3 cut(s) | 307, 392, 621 |
| Cac8I | GCNNGC | 2 cut(s) | 201, 329 |
| CciI | TCATGA | 2 cut(s) | 93, 496 |
| CfoI | GCGC | 1 cut(s) | 520 |
| Cfr10I | RCCGGY | 2 cut(s) | 199, 547 |
| Cfr13I | GGNCC | 1 cut(s) | 146 |
| ClaI | ATCGAT | 1 cut(s) | 802 |
| Csp6I | GTAC | 5 cut(s) | 16, 208, 420, 674, 761 |
| CviAII | CATG | 7 cut(s) | 94, 182, 232, 361, 497, 884, 898 |
| CviQI | GTAC | 5 cut(s) | 16, 208, 420, 674, 761 |
| DdeI | CTNAG | 3 cut(s) | 303, 509, 909 |
| DinI | GGCGCC | 1 cut(s) | 519 |
| DpnI | GATC | 2 cut(s) | 748, 801 |
| DpnII | GATC | 2 cut(s) | 746, 799 |
| Eam1104I | CTCTTC | 1 cut(s) | 552 |
| EarI | CTCTTC | 1 cut(s) | 552 |
| EciI | GGCGGA | 2 cut(s) | 20, 218 |
| Eco130I | CCWWGG | 1 cut(s) | 716 |
| Eco57I | CTGAAG | 4 cut(s) | 35, 537, 816, 878 |
| Eco88I | CYCGRG | 2 cut(s) | 107, 150 |
| EcoO109I | RGGNCCY | 1 cut(s) | 146 |
| EcoRI | GAATTC | 2 cut(s) | 45, 161 |
| EcoT14I | CCWWGG | 1 cut(s) | 716 |
| EgeI | GGCGCC | 1 cut(s) | 519 |
| EheI | GGCGCC | 1 cut(s) | 519 |
| ErhI | CCWWGG | 1 cut(s) | 716 |
| FaeI | CATG | 7 cut(s) | 97, 185, 235, 364, 500, 887, 901 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 263, 295 |
| FatI | CATG | 7 cut(s) | 93, 181, 231, 360, 496, 883, 897 |
| Fnu4HI | GCNGC | 3 cut(s) | 314, 648, 819 |
| FokI | GGATG | 2 cut(s) | 285, 549 |
| Fsp4HI | GCNGC | 3 cut(s) | 314, 648, 819 |
| FspBI | CTAG | 1 cut(s) | 876 |
| GlaI | GCGC | 1 cut(s) | 519 |
| GluI | GCNGC | 3 cut(s) | 314, 648, 819 |
| GsaI | CCCAGC | 2 cut(s) | 35, 647 |
| GsuI | CTGGAG | 1 cut(s) | 630 |
| HaeII | RGCGCY | 1 cut(s) | 521 |
| HaeIII | GGCC | 2 cut(s) | 147, 769 |
| HapII | CCGG | 3 cut(s) | 22, 200, 548 |
| HhaI | GCGC | 1 cut(s) | 520 |
| Hin1I | GRCGYC | 1 cut(s) | 518 |
| Hin1II | CATG | 7 cut(s) | 97, 185, 235, 364, 500, 887, 901 |
| Hin6I | GCGC | 1 cut(s) | 518 |
| HinP1I | GCGC | 1 cut(s) | 518 |
| HinfI | GANTC | 4 cut(s) | 190, 292, 493, 905 |
| HpaII | CCGG | 3 cut(s) | 22, 200, 548 |
| HphI | GGTGA | 2 cut(s) | 537, 593 |
| Hpy166II | GTNNAC | 3 cut(s) | 392, 599, 810 |
| Hpy188I | TCNGA | 4 cut(s) | 85, 477, 556, 786 |
| Hpy188III | TCNNGA | 9 cut(s) | 53, 94, 107, 152, 302, 440, 467, 497, 530 |
| Hpy8I | GTNNAC | 3 cut(s) | 392, 599, 810 |
| Hpy99I | CGWCG | 1 cut(s) | 89 |
| HpyAV | CCTTC | 5 cut(s) | 234, 238, 572, 576, 747 |
| HpyCH4IV | ACGT | 1 cut(s) | 472 |
| HpyCH4V | TGCA | 4 cut(s) | 70, 137, 356, 383 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 313, 344, 353 |
| HpyF3I | CTNAG | 3 cut(s) | 303, 509, 909 |
| HpySE526I | ACGT | 1 cut(s) | 472 |
| Hsp92I | GRCGYC | 1 cut(s) | 518 |
| Hsp92II | CATG | 7 cut(s) | 97, 185, 235, 364, 500, 887, 901 |
| HspAI | GCGC | 1 cut(s) | 518 |
| KasI | GGCGCC | 1 cut(s) | 517 |
| KroI | GCCGGC | 1 cut(s) | 199 |
| KroNI | GCCGGC | 1 cut(s) | 201 |
| Kzo9I | GATC | 2 cut(s) | 746, 799 |
| LguI | GCTCTTC | 1 cut(s) | 552 |
| LmnI | GCTCC | 4 cut(s) | 324, 611, 639, 739 |
| Lsp1109I | GCAGC | 3 cut(s) | 325, 659, 805 |
| LweI | GCATC | 2 cut(s) | 57, 571 |
| MaeI | CTAG | 1 cut(s) | 876 |
| MaeII | ACGT | 1 cut(s) | 472 |
| MaeIII | GTNAC | 1 cut(s) | 440 |
| MalI | GATC | 2 cut(s) | 748, 801 |
| MboI | GATC | 2 cut(s) | 746, 799 |
| MboII | GAAGA | 9 cut(s) | 37, 41, 422, 490, 569, 680, 809, 842, 871 |
| MfeI | CAATTG | 1 cut(s) | 194 |
| MhlI | GDGCHC | 2 cut(s) | 309, 636 |
| MluCI | AATT | 6 cut(s) | 45, 131, 138, 161, 194, 483 |
| Mly113I | GGCGCC | 1 cut(s) | 518 |
| MmeI | TCCRAC | 2 cut(s) | 108, 805 |
| MroNI | GCCGGC | 1 cut(s) | 199 |
| MseI | TTAA | 1 cut(s) | 281 |
| MslI | CAYNNNNRTG | 1 cut(s) | 375 |
| MspCI | CTTAAG | 1 cut(s) | 280 |
| MspI | CCGG | 3 cut(s) | 22, 200, 548 |
| MunI | CAATTG | 1 cut(s) | 194 |
| Mva1269I | GAATGC | 2 cut(s) | 356, 697 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 313, 344, 353 |
| NaeI | GCCGGC | 1 cut(s) | 201 |
| NarI | GGCGCC | 1 cut(s) | 518 |
| NdeII | GATC | 2 cut(s) | 746, 799 |
| NgoMIV | GCCGGC | 1 cut(s) | 199 |
| NlaIII | CATG | 7 cut(s) | 97, 185, 235, 364, 500, 887, 901 |
| NlaIV | GGNNCC | 3 cut(s) | 519, 613, 889 |
| NmuCI | GTSAC | 1 cut(s) | 440 |
| PaeR7I | CTCGAG | 1 cut(s) | 107 |
| PagI | TCATGA | 2 cut(s) | 93, 496 |
| PciSI | GCTCTTC | 1 cut(s) | 552 |
| PctI | GAATGC | 2 cut(s) | 356, 697 |
| PdiI | GCCGGC | 1 cut(s) | 201 |
| PfeI | GAWTC | 3 cut(s) | 190, 292, 493 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 458 |
| PkrI | GCNGC | 3 cut(s) | 315, 649, 820 |
| PluTI | GGCGCC | 1 cut(s) | 521 |
| PspFI | CCCAGC | 2 cut(s) | 31, 643 |
| PspN4I | GGNNCC | 3 cut(s) | 519, 613, 889 |
| PspPI | GGNCC | 1 cut(s) | 146 |
| RsaI | GTAC | 5 cut(s) | 17, 209, 421, 675, 762 |
| RsaNI | GTAC | 5 cut(s) | 16, 208, 420, 674, 761 |
| RseI | CAYNNNNRTG | 1 cut(s) | 375 |
| SapI | GCTCTTC | 1 cut(s) | 552 |
| SaqAI | TTAA | 1 cut(s) | 281 |
| SatI | GCNGC | 3 cut(s) | 314, 648, 819 |
| Sau3AI | GATC | 2 cut(s) | 746, 799 |
| Sau96I | GGNCC | 1 cut(s) | 146 |
| SduI | GDGCHC | 2 cut(s) | 309, 636 |
| SetI | ASST | 5 cut(s) | 60, 475, 526, 583, 736 |
| SfaNI | GCATC | 2 cut(s) | 57, 571 |
| SfoI | GGCGCC | 1 cut(s) | 519 |
| Sfr274I | CTCGAG | 1 cut(s) | 107 |
| SlaI | CTCGAG | 1 cut(s) | 107 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 375 |
| SmlI | CTYRAG | 2 cut(s) | 107, 280 |
| SmoI | CTYRAG | 2 cut(s) | 107, 280 |
| Sse9I | AATT | 6 cut(s) | 45, 131, 138, 161, 194, 483 |
| SsiI | CCGC | 4 cut(s) | 5, 203, 331, 879 |
| SspDI | GGCGCC | 1 cut(s) | 517 |
| SspMI | CTAG | 1 cut(s) | 876 |
| StyI | CCWWGG | 1 cut(s) | 716 |
| TaiI | ACGT | 1 cut(s) | 475 |
| TaqI | TCGA | 5 cut(s) | 108, 142, 165, 290, 802 |
| TasI | AATT | 6 cut(s) | 45, 131, 138, 161, 194, 483 |
| TatI | WGTACW | 3 cut(s) | 15, 673, 760 |
| TfiI | GAWTC | 3 cut(s) | 190, 292, 493 |
| Tru1I | TTAA | 1 cut(s) | 281 |
| Tru9I | TTAA | 1 cut(s) | 281 |
| TscAI | CASTG | 3 cut(s) | 314, 399, 628 |
| TseFI | GTSAC | 1 cut(s) | 440 |
| TseI | GCWGC | 3 cut(s) | 313, 647, 818 |
| Tsp45I | GTSAC | 1 cut(s) | 440 |
| TspDTI | ATGAA | 8 cut(s) | 82, 220, 349, 485, 513, 744, 884, 886 |
| TspRI | CASTG | 3 cut(s) | 314, 399, 628 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 458 |
| Vha464I | CTTAAG | 1 cut(s) | 280 |
| XapI | RAATTY | 2 cut(s) | 45, 161 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 841 |
| XhoI | CTCGAG | 1 cut(s) | 107 |
| XspI | CTAG | 1 cut(s) | 876 |