Rorug07G0299300
MADS Family

MADS-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000389
Physical Location & Seq
Forward (+)
29572280 .. 29574461
2182 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0299300.1

Sequence Viewer

Length: 357 bp
ATGAAGGAAATCGGGCAGGACTTGTCTGGATTCAACTGCGGACTTGCTCATCTCTTCTTGCAACACACAAGTGCTTCTCTTACTATCAATGAGAACTATGACTCTGACGTTCGTACCGATACAGAGACATTCCTGAATAGGATAGTTCCTGAGGGGGCATCTTCACCGTGGAGACATACCCTTGAAGGCCCAGAGGACATGCCAGCACACATTAAATCATCAATGTTTGGCTGCCAACTGTCGATTCCAATCACAAATGGGAAGCTTAACATGGGAACTTGGCAGGGAATATGGTTGTGCGAGCATCGTGACGAACCTAGTGCTCGAAAAGTTGTGGTCACCCTTAAGGGAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000060 GO:0000900 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006417 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0007275 GO:0008104 GO:0008150 GO:0009266 GO:0009628 GO:0009719 GO:0009725 GO:0009739 GO:0009791 GO:0009888 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009908 GO:0009909 GO:0009910 GO:0010033 GO:0010073 GO:0010074 GO:0010077 GO:0010219 GO:0010220 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0015031 GO:0015833 GO:0017038 GO:0017148 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0030371 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0033036 GO:0033365 GO:0033993 GO:0034248 GO:0034249 GO:0034504 GO:0034613 GO:0040034 GO:0042221 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045182 GO:0045184 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046907 GO:0046982 GO:0046983 GO:0048367 GO:0048438 GO:0048506 GO:0048507 GO:0048509 GO:0048510 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048581 GO:0048583 GO:0048584 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051169 GO:0051170 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051234 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051254 GO:0051641 GO:0051649 GO:0060255 GO:0061458 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0080090 GO:0080134 GO:0090079 GO:0090567 GO:0097159 GO:0098727 GO:0140110 GO:1901363 GO:1901700 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418
Pfam Domains
Protein Families
K-box SRF-TF

Protein Analysis

118

Amino Acids

13.13

Weight (kDa)

5.65

Isoelectric Point (pI)

32.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
YjbQ PF01894 8 - 114 2.3e-40 UPF0047 protein YjbQ-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000389)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g03630 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_5g35400 FvH4_5g35400 FvH4_5g35400 FvH4_5g35400 FvH4_5g35401 FvH4_5g35401
malus_domestica MD08G1196900.v1.1 MD08G1197000.v1.1 MD08G1197200.v1.1 MD08G1197300.v1.1 MD15G1384500.v1.1 MD15G1384600.v1.1
prunus_persica Prupe.1G531100_v2.0.a1 Prupe.1G531100_v2.0.a1 Prupe.1G531400_v2.0.a1 Prupe.1G531600_v2.0.a1 Prupe.1G531700_v2.0.a1
pyrus_communis pycom08g16910 pycom08g16940 pycom08g16960 pycom15g34480 pycom15g34490
rosa_chinensis RchiOBHm_Chr4g0434911 RchiOBHm_Chr7g0205051 RchiOBHm_Chr7g0205061 RchiOBHm_Chr7g0205071 RchiOBHm_Chr7g0236801 RchiOBHm_Chr7g0236811
rosa_laevigata RLG00000001060 RLG00000003404 RLG00000003405 RLG00000006636
rosa_multiflora Rmu_sc0008447.1_g000001 Rmu_sc0008851.1_g000011 Rmu_sc0008851.1_g000015
rosa_roxburghii Rroxscaffold_3G00224810 Rroxscaffold_3G00224820 Rroxscaffold_3G00252600 Rroxscaffold_5G00376120
rosa_rugosa Rorug04G0280500 Rorug04G0280600 Rorug04G0280700 Rorug04G0280800 Rorug04G0280900 Rorug04G0281000 Rorug04G0281100 Rorug07G0087100 Rorug07G0087200 Rorug07G0087200 Rorug07G0087300 Rorug07G0299300 Rorug07G0299400 Rorug07G0299500
rosa_samantha Rh4AG336000 Rh4BG344500 Rh4CG358900 Rh4DG338500 Rh7AG218200 Rh7AG218300 Rh7AG454500 Rh7AG454700 Rh7BG214900 Rh7BG224100 Rh7BG425700 Rh7BG425800 Rh7BG425900 Rh7CG231500 Rh7CG473200 Rh7CG473300 Rh7DG225600 Rh7DG225800 Rh7DG442500 Rh7DG442600
rosa_wichuraiana Rw4G029320 Rw7G018890 Rw7G018930 Rw7G037730 Rw7G037740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 39
AfaI GTAC 1 cut(s) 115
AflII CTTAAG 1 cut(s) 344
AgsI TTSAA 2 cut(s) 34, 185
AjuI GAANNNNNNNTTGG 2 cut(s) 228, 260
AleI CACNNNNGTG 1 cut(s) 69
AluBI AGCT 1 cut(s) 265
AluI AGCT 1 cut(s) 265
Alw21I GWGCWC 1 cut(s) 325
Alw26I GTCTC 2 cut(s) 119, 166
AoxI GGCC 1 cut(s) 187
ApeKI GCWGC 1 cut(s) 231
AspS9I GGNCC 1 cut(s) 188
AsuHPI GGTGA 2 cut(s) 156, 331
AxyI CCTNAGG 1 cut(s) 150
BaeI ACNNNNGTAYC 2 cut(s) 97, 130
Bbv12I GWGCWC 1 cut(s) 325
BbvI GCAGC 1 cut(s) 218
BcgI CGANNNNNNTGC 2 cut(s) 302, 336
BcoDI GTCTC 2 cut(s) 119, 166
BfaI CTAG 1 cut(s) 318
BfrI CTTAAG 1 cut(s) 344
BisI GCNGC 1 cut(s) 232
BlsI GCNGC 1 cut(s) 233
BmgT120I GGNCC 1 cut(s) 188
BmsI GCATC 2 cut(s) 167, 313
BsaBI GATNNNNATC 1 cut(s) 248
BsaJI CCNNGG 1 cut(s) 167
Bse21I CCTNAGG 1 cut(s) 150
Bse8I GATNNNNATC 1 cut(s) 248
BseDI CCNNGG 1 cut(s) 167
BseJI GATNNNNATC 1 cut(s) 248
BseMII CTCAG 1 cut(s) 141
BseXI GCAGC 1 cut(s) 218
BshFI GGCC 1 cut(s) 189
BsiHKAI GWGCWC 1 cut(s) 325
BsmAI GTCTC 2 cut(s) 119, 166
BsnI GGCC 1 cut(s) 189
Bsp1286I GDGCHC 1 cut(s) 325
BspACI CCGC 1 cut(s) 39
BspANI GGCC 1 cut(s) 189
BspCNI CTCAG 1 cut(s) 142
BspTI CTTAAG 1 cut(s) 344
BssECI CCNNGG 1 cut(s) 167
Bst4CI ACNGT 2 cut(s) 168, 240
Bst6I CTCTTC 1 cut(s) 59
BstAFI CTTAAG 1 cut(s) 344
BstC8I GCNNGC 2 cut(s) 204, 302
BstDEI CTNAG 1 cut(s) 150
BstDSI CCRYGG 1 cut(s) 167
BstEII GGTNACC 1 cut(s) 337
BstMAI GTCTC 2 cut(s) 119, 166
BstNSI RCATGY 1 cut(s) 202
BstPI GGTNACC 1 cut(s) 337
BstV1I GCAGC 1 cut(s) 218
Bsu36I CCTNAGG 1 cut(s) 150
BsuRI GGCC 1 cut(s) 189
BtgI CCRYGG 1 cut(s) 167
Cac8I GCNNGC 2 cut(s) 204, 302
Cfr13I GGNCC 1 cut(s) 188
Csp6I GTAC 1 cut(s) 114
CviAII CATG 2 cut(s) 199, 271
CviJI RGCY 3 cut(s) 189, 231, 265
CviKI_1 RGCY 3 cut(s) 189, 231, 265
CviQI GTAC 1 cut(s) 114
DdeI CTNAG 1 cut(s) 150
Eam1104I CTCTTC 1 cut(s) 59
EarI CTCTTC 1 cut(s) 59
Eco81I CCTNAGG 1 cut(s) 150
Eco91I GGTNACC 1 cut(s) 337
EcoO65I GGTNACC 1 cut(s) 337
FaeI CATG 2 cut(s) 202, 274
FaiI YATR 6 cut(s) 99, 177, 200, 272, 292, 355
FatI CATG 2 cut(s) 198, 270
Fnu4HI GCNGC 1 cut(s) 232
Fsp4HI GCNGC 1 cut(s) 232
FspBI CTAG 1 cut(s) 318
GluI GCNGC 1 cut(s) 232
HaeIII GGCC 1 cut(s) 189
Hin1II CATG 2 cut(s) 202, 274
HindIII AAGCTT 1 cut(s) 263
HinfI GANTC 3 cut(s) 30, 101, 244
HphI GGTGA 2 cut(s) 156, 331
Hpy188I TCNGA 1 cut(s) 106
Hpy188III TCNNGA 4 cut(s) 27, 133, 149, 308
HpyAV CCTTC 1 cut(s) 179
HpyCH4III ACNGT 2 cut(s) 168, 240
HpyCH4IV ACGT 1 cut(s) 108
HpyCH4V TGCA 1 cut(s) 61
HpyF3I CTNAG 1 cut(s) 150
HpySE526I ACGT 1 cut(s) 108
Hsp92II CATG 2 cut(s) 202, 274
LpnPI CCDG 7 cut(s) 2, 12, 146, 162, 204, 216, 269
Lsp1109I GCAGC 1 cut(s) 218
LweI GCATC 2 cut(s) 167, 313
MaeI CTAG 1 cut(s) 318
MaeII ACGT 1 cut(s) 108
MaeIII GTNAC 2 cut(s) 308, 337
MboII GAAGA 2 cut(s) 46, 153
MhlI GDGCHC 1 cut(s) 325
MlyI GAGTC 1 cut(s) 95
MnlI CCTC 2 cut(s) 145, 187
MseI TTAA 3 cut(s) 213, 267, 345
MslI CAYNNNNRTG 1 cut(s) 69
MspCI CTTAAG 1 cut(s) 344
NlaIII CATG 2 cut(s) 202, 274
NmuCI GTSAC 2 cut(s) 308, 337
NspI RCATGY 1 cut(s) 202
OliI CACNNNNGTG 1 cut(s) 69
PcsI WCGNNNNNNNCGW 1 cut(s) 114
PfeI GAWTC 2 cut(s) 30, 244
PkrI GCNGC 1 cut(s) 233
PleI GAGTC 1 cut(s) 95
PpsI GAGTC 1 cut(s) 95
PspEI GGTNACC 1 cut(s) 337
PspPI GGNCC 1 cut(s) 188
RsaI GTAC 1 cut(s) 115
RsaNI GTAC 1 cut(s) 114
RseI CAYNNNNRTG 1 cut(s) 69
SaqAI TTAA 3 cut(s) 213, 267, 345
SatI GCNGC 1 cut(s) 232
Sau96I GGNCC 1 cut(s) 188
SchI GAGTC 1 cut(s) 95
SduI GDGCHC 1 cut(s) 325
SetI ASST 3 cut(s) 111, 267, 319
SfaNI GCATC 2 cut(s) 167, 313
SmiMI CAYNNNNRTG 1 cut(s) 69
SmlI CTYRAG 1 cut(s) 344
SmoI CTYRAG 1 cut(s) 344
SsiI CCGC 1 cut(s) 39
SspMI CTAG 1 cut(s) 318
TaaI ACNGT 2 cut(s) 168, 240
TaiI ACGT 1 cut(s) 111
TaqI TCGA 2 cut(s) 242, 325
TfiI GAWTC 2 cut(s) 30, 244
Tru1I TTAA 3 cut(s) 213, 267, 345
Tru9I TTAA 3 cut(s) 213, 267, 345
TseFI GTSAC 2 cut(s) 308, 337
TseI GCWGC 1 cut(s) 231
Tsp45I GTSAC 2 cut(s) 308, 337
TspDTI ATGAA 1 cut(s) 17
Vha464I CTTAAG 1 cut(s) 344
XceI RCATGY 1 cut(s) 202
XspI CTAG 1 cut(s) 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.