RchiOBHm_Chr7g0205061
MADS Family

MADS-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000389
Physical Location & Seq
Forward (+)
22710997 .. 22712860
1864 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18351

Sequence Viewer

Length: 588 bp
ATGCAGAAATATTTTTTTTTCCCTAGACACTGGTCAGGCTTGAAAAGAAAATCAACTAAACTAGCTATATCCTGTATTGTTACGAAGGATGTCATTGCAAGGTACGAATTGCACACTGAAGATGTGGAAAAGGGCGACCAGCAGCCACCTCCTGAGCTCCAGCTGGAGATTAATGAGTGCATGAGGTTGAATAAGGAACTTGCGGACAAGATCCTCGAGCTAGGGCGGATGGAGGGGCAGGATCTAGAAGAGCTGAATATAGATGAATTGCAGAGATTGGAGAATAGGATTGAAGGAGGACTCAGCCGTGTGCTTCAAACGAAGGATAAAAGGATTATGAGTCAGATTCTGGCACTTGAAAAAAAGGGAGCAGAGTTGACAGAAGCAAACAACCAATTAAGGCAGAGGTTAGGGATGCTATCCAATGGAGATGGAAATAGAGCTGGTGGTGTTGCTTTGGAGTCGGAGATCTCAACTGATGAAGAAGAAGGTATGGCATCGGAATTTGTGGTCGGCTGCTACAGTACTGGTTCTTCGACTTCTTCCCTTGATGATGACTCCTCTGACAACCCCTTAATTATCTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000060 GO:0000900 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006417 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0007275 GO:0008104 GO:0008150 GO:0009266 GO:0009628 GO:0009719 GO:0009725 GO:0009739 GO:0009791 GO:0009888 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009908 GO:0009909 GO:0009910 GO:0010033 GO:0010073 GO:0010074 GO:0010077 GO:0010219 GO:0010220 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0015031 GO:0015833 GO:0017038 GO:0017148 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0030371 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0033036 GO:0033365 GO:0033993 GO:0034248 GO:0034249 GO:0034504 GO:0034613 GO:0040034 GO:0042221 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045182 GO:0045184 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046907 GO:0046982 GO:0046983 GO:0048367 GO:0048438 GO:0048506 GO:0048507 GO:0048509 GO:0048510 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048581 GO:0048583 GO:0048584 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051169 GO:0051170 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051234 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051254 GO:0051641 GO:0051649 GO:0060255 GO:0061458 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0080090 GO:0080134 GO:0090079 GO:0090567 GO:0097159 GO:0098727 GO:0140110 GO:1901363 GO:1901700 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418
Pfam Domains
Protein Families
K-box SRF-TF

Protein Analysis

195

Amino Acids

21.88

Weight (kDa)

4.74

Isoelectric Point (pI)

54.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
K-box PF01486 58 - 137 3e-13 K-box region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000389)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g03630 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_5g35400 FvH4_5g35400 FvH4_5g35400 FvH4_5g35400 FvH4_5g35401 FvH4_5g35401
malus_domestica MD08G1196900.v1.1 MD08G1197000.v1.1 MD08G1197200.v1.1 MD08G1197300.v1.1 MD15G1384500.v1.1 MD15G1384600.v1.1
prunus_persica Prupe.1G531100_v2.0.a1 Prupe.1G531100_v2.0.a1 Prupe.1G531400_v2.0.a1 Prupe.1G531600_v2.0.a1 Prupe.1G531700_v2.0.a1
pyrus_communis pycom08g16910 pycom08g16940 pycom08g16960 pycom15g34480 pycom15g34490
rosa_chinensis RchiOBHm_Chr4g0434911 RchiOBHm_Chr7g0205051 RchiOBHm_Chr7g0205061 RchiOBHm_Chr7g0205071 RchiOBHm_Chr7g0236801 RchiOBHm_Chr7g0236811
rosa_laevigata RLG00000001060 RLG00000003404 RLG00000003405 RLG00000006636
rosa_multiflora Rmu_sc0008447.1_g000001 Rmu_sc0008851.1_g000011 Rmu_sc0008851.1_g000015
rosa_roxburghii Rroxscaffold_3G00224810 Rroxscaffold_3G00224820 Rroxscaffold_3G00252600 Rroxscaffold_5G00376120
rosa_rugosa Rorug04G0280500 Rorug04G0280600 Rorug04G0280700 Rorug04G0280800 Rorug04G0280900 Rorug04G0281000 Rorug04G0281100 Rorug07G0087100 Rorug07G0087200 Rorug07G0087200 Rorug07G0087300 Rorug07G0299300 Rorug07G0299400 Rorug07G0299500
rosa_samantha Rh4AG336000 Rh4BG344500 Rh4CG358900 Rh4DG338500 Rh7AG218200 Rh7AG218300 Rh7AG454500 Rh7AG454700 Rh7BG214900 Rh7BG224100 Rh7BG425700 Rh7BG425800 Rh7BG425900 Rh7CG231500 Rh7CG473200 Rh7CG473300 Rh7DG225600 Rh7DG225800 Rh7DG442500 Rh7DG442600
rosa_wichuraiana Rw4G029320 Rw7G018890 Rw7G018930 Rw7G037730 Rw7G037740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 203, 226
AclWI GGATC 2 cut(s) 205, 249
AcsI RAATTY 1 cut(s) 503
AcuI CTGAAG 1 cut(s) 138
AfaI GTAC 2 cut(s) 104, 526
AgsI TTSAA 5 cut(s) 43, 190, 293, 317, 359
AluBI AGCT 6 cut(s) 65, 157, 163, 220, 253, 443
AluI AGCT 6 cut(s) 65, 157, 163, 220, 253, 443
Alw21I GWGCWC 1 cut(s) 159
AlwI GGATC 2 cut(s) 205, 249
AlwNI CAGNNNCTG 1 cut(s) 349
Ama87I CYCGRG 1 cut(s) 215
ApeKI GCWGC 2 cut(s) 142, 516
ApoI RAATTY 1 cut(s) 503
AseI ATTAAT 1 cut(s) 171
AvaI CYCGRG 1 cut(s) 215
BanII GRGCYC 1 cut(s) 159
BarI GAAGNNNNNNTAC 2 cut(s) 517, 549
Bbv12I GWGCWC 1 cut(s) 159
BbvI GCAGC 2 cut(s) 154, 503
BccI CCATC 2 cut(s) 223, 425
BceAI ACGGC 1 cut(s) 291
BfaI CTAG 4 cut(s) 24, 62, 221, 245
BfmI CTRYAG 1 cut(s) 520
BglII AGATCT 1 cut(s) 468
BisI GCNGC 2 cut(s) 143, 517
BlsI GCNGC 2 cut(s) 144, 518
BmcAI AGTACT 1 cut(s) 526
BmeT110I CYCGRG 1 cut(s) 215
BmsI GCATC 2 cut(s) 405, 506
BoxI GACNNNNGTC 1 cut(s) 31
BpmI CTGGAG 2 cut(s) 143, 185
Bpu10I CCTNAGC 1 cut(s) 153
Bse1I ACTGG 2 cut(s) 35, 532
Bse3DI GCAATG 1 cut(s) 93
BseGI GGATG 3 cut(s) 94, 234, 420
BseMI GCAATG 1 cut(s) 93
BseMII CTCAG 2 cut(s) 144, 316
BseNI ACTGG 2 cut(s) 35, 532
BseRI GAGGAG 1 cut(s) 550
BseXI GCAGC 2 cut(s) 154, 503
BsiHKAI GWGCWC 1 cut(s) 159
BsiHKCI CYCGRG 1 cut(s) 215
BsoBI CYCGRG 1 cut(s) 215
Bsp1286I GDGCHC 1 cut(s) 159
Bsp143I GATC 3 cut(s) 210, 241, 468
BspACI CCGC 2 cut(s) 203, 226
BspCNI CTCAG 2 cut(s) 145, 315
BspPI GGATC 2 cut(s) 205, 249
BspQI GCTCTTC 1 cut(s) 243
BsrDI GCAATG 1 cut(s) 93
BsrI ACTGG 2 cut(s) 35, 532
BssMI GATC 3 cut(s) 210, 241, 468
Bst4CI ACNGT 1 cut(s) 524
Bst6I CTCTTC 1 cut(s) 243
BstDEI CTNAG 2 cut(s) 153, 302
BstF5I GGATG 3 cut(s) 94, 234, 420
BstKTI GATC 3 cut(s) 213, 244, 471
BstMBI GATC 3 cut(s) 210, 241, 468
BstPAI GACNNNNGTC 1 cut(s) 31
BstSFI CTRYAG 1 cut(s) 520
BstV1I GCAGC 2 cut(s) 154, 503
BstX2I RGATCY 3 cut(s) 210, 241, 468
BstYI RGATCY 3 cut(s) 210, 241, 468
BtsCI GGATG 3 cut(s) 94, 234, 420
BtsIMutI CAGTG 2 cut(s) 28, 114
CaiI CAGNNNCTG 1 cut(s) 349
Csp6I GTAC 2 cut(s) 103, 525
CviAII CATG 1 cut(s) 181
CviQI GTAC 2 cut(s) 103, 525
DdeI CTNAG 2 cut(s) 153, 302
DpnI GATC 3 cut(s) 212, 243, 470
DpnII GATC 3 cut(s) 210, 241, 468
Eam1104I CTCTTC 1 cut(s) 243
EarI CTCTTC 1 cut(s) 243
EciI GGCGGA 1 cut(s) 241
Ecl136II GAGCTC 1 cut(s) 157
Eco24I GRGCYC 1 cut(s) 159
Eco53kI GAGCTC 1 cut(s) 157
Eco57I CTGAAG 1 cut(s) 138
Eco88I CYCGRG 1 cut(s) 215
EcoICRI GAGCTC 1 cut(s) 157
EcoT38I GRGCYC 1 cut(s) 159
FaeI CATG 1 cut(s) 184
FaiI YATR 5 cut(s) 68, 182, 260, 338, 494
FatI CATG 1 cut(s) 180
Fnu4HI GCNGC 2 cut(s) 143, 517
FokI GGATG 3 cut(s) 101, 241, 427
FriOI GRGCYC 1 cut(s) 159
Fsp4HI GCNGC 2 cut(s) 143, 517
FspBI CTAG 4 cut(s) 24, 62, 221, 245
GluI GCNGC 2 cut(s) 143, 517
GsuI CTGGAG 2 cut(s) 143, 185
Hin1II CATG 1 cut(s) 184
HincII GTYRAC 1 cut(s) 378
HindII GTYRAC 1 cut(s) 378
HinfI GANTC 5 cut(s) 300, 340, 346, 461, 557
Hpy166II GTNNAC 1 cut(s) 378
Hpy188I TCNGA 4 cut(s) 345, 466, 502, 565
Hpy188III TCNNGA 2 cut(s) 152, 245
Hpy8I GTNNAC 1 cut(s) 378
HpyAV CCTTC 4 cut(s) 79, 287, 316, 482
HpyCH4III ACNGT 1 cut(s) 524
HpyCH4V TGCA 5 cut(s) 4, 98, 112, 180, 271
HpyF3I CTNAG 2 cut(s) 153, 302
Hsp92II CATG 1 cut(s) 184
Kzo9I GATC 3 cut(s) 210, 241, 468
LguI GCTCTTC 1 cut(s) 243
LmnI GCTCC 2 cut(s) 162, 368
Lsp1109I GCAGC 2 cut(s) 154, 503
LweI GCATC 2 cut(s) 405, 506
MaeI CTAG 4 cut(s) 24, 62, 221, 245
MaeIII GTNAC 1 cut(s) 79
MalI GATC 3 cut(s) 212, 243, 470
MboI GATC 3 cut(s) 210, 241, 468
MboII GAAGA 6 cut(s) 131, 260, 494, 497, 525, 534
MflI RGATCY 3 cut(s) 210, 241, 468
MhlI GDGCHC 1 cut(s) 159
MluCI AATT 5 cut(s) 107, 266, 395, 503, 576
MlyI GAGTC 4 cut(s) 294, 349, 470, 551
MmeI TCCRAC 1 cut(s) 444
MnlI CCTC 7 cut(s) 159, 177, 224, 226, 290, 399, 571
MseI TTAA 4 cut(s) 171, 398, 575, 586
MspA1I CMGCKG 1 cut(s) 163
NdeII GATC 3 cut(s) 210, 241, 468
NlaIII CATG 1 cut(s) 184
PaeR7I CTCGAG 1 cut(s) 215
PciSI GCTCTTC 1 cut(s) 243
PfeI GAWTC 1 cut(s) 346
PkrI GCNGC 2 cut(s) 144, 518
PleI GAGTC 4 cut(s) 294, 348, 469, 551
PpsI GAGTC 4 cut(s) 294, 348, 469, 551
PshAI GACNNNNGTC 1 cut(s) 31
PshBI ATTAAT 1 cut(s) 171
Psp124BI GAGCTC 1 cut(s) 159
PspXI VCTCGAGB 1 cut(s) 215
PstNI CAGNNNCTG 1 cut(s) 349
PsuI RGATCY 3 cut(s) 210, 241, 468
PvuII CAGCTG 1 cut(s) 163
RsaI GTAC 2 cut(s) 104, 526
RsaNI GTAC 2 cut(s) 103, 525
SacI GAGCTC 1 cut(s) 159
SapI GCTCTTC 1 cut(s) 243
SaqAI TTAA 4 cut(s) 171, 398, 575, 586
SatI GCNGC 2 cut(s) 143, 517
Sau3AI GATC 3 cut(s) 210, 241, 468
ScaI AGTACT 1 cut(s) 526
SchI GAGTC 4 cut(s) 294, 349, 470, 551
SduI GDGCHC 1 cut(s) 159
SfaNI GCATC 2 cut(s) 405, 506
SfcI CTRYAG 1 cut(s) 520
Sfr274I CTCGAG 1 cut(s) 215
SlaI CTCGAG 1 cut(s) 215
SmlI CTYRAG 1 cut(s) 215
SmoI CTYRAG 1 cut(s) 215
Sse9I AATT 5 cut(s) 107, 266, 395, 503, 576
SsiI CCGC 2 cut(s) 203, 226
SspI AATATT 1 cut(s) 11
SspMI CTAG 4 cut(s) 24, 62, 221, 245
SstI GAGCTC 1 cut(s) 159
TaaI ACNGT 1 cut(s) 524
TaqI TCGA 2 cut(s) 216, 536
TasI AATT 5 cut(s) 107, 266, 395, 503, 576
TatI WGTACW 1 cut(s) 524
TfiI GAWTC 1 cut(s) 346
Tru1I TTAA 4 cut(s) 171, 398, 575, 586
Tru9I TTAA 4 cut(s) 171, 398, 575, 586
TscAI CASTG 2 cut(s) 35, 121
TseI GCWGC 2 cut(s) 142, 516
TspDTI ATGAA 2 cut(s) 279, 495
TspRI CASTG 2 cut(s) 35, 121
VspI ATTAAT 1 cut(s) 171
XapI RAATTY 1 cut(s) 503
XbaI TCTAGA 1 cut(s) 244
XhoI CTCGAG 1 cut(s) 215
XspI CTAG 4 cut(s) 24, 62, 221, 245
ZrmI AGTACT 1 cut(s) 526
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.