Rmu_sc0008851.1_g000015
MADS Family

MADS-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008851.1
OG0000389
Physical Location & Seq
Forward (+)
72957 .. 74989
2033 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008851.1_g000015.1.cds

Sequence Viewer

Length: 618 bp
atgccgtttcgaggccctaaacgatcccgaaagcccgaaaaatgctacagctcatggcaaagcgatgagtcttgtttctggcgcgattccctttccggaaaggcaagcacaaaggatgttattgcaaggtacaaagcgcacattgaaaatgtggagaagttggagccatctcttgagctccagcttgatcgcatcaagttgagtatggaacttgcagacaagacccgcgtgctaaggcagatgaatggtgaggatctggaagggctgaatatggatgagttgaagaaattggaggaggacattgaaggaggacttagccgtgtgcttcacaccaaggaagaaaagattatgggtgagattatggcacttgaagcaaagggagctgagttgttggtagcgaacaatcatttaaggcagacgatggggatgatatccaacgcaaatggaaacaaagctggtgtactcgccttggagtcggatatctcaacggcagaagaaggtttatcatcggaatctgccacaaatgctagcagctgctgcgctactggttcttccccagatgtcgactctgctgacgacaccttagctctcaaacttgggcttccttaccgtggctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000060 GO:0000900 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006417 GO:0006606 GO:0006810 GO:0006886 GO:0006913 GO:0007275 GO:0008104 GO:0008150 GO:0009266 GO:0009628 GO:0009719 GO:0009725 GO:0009739 GO:0009791 GO:0009888 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009908 GO:0009909 GO:0009910 GO:0010033 GO:0010073 GO:0010074 GO:0010077 GO:0010219 GO:0010220 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0015031 GO:0015833 GO:0017038 GO:0017148 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0030371 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0033036 GO:0033365 GO:0033993 GO:0034248 GO:0034249 GO:0034504 GO:0034613 GO:0040034 GO:0042221 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045182 GO:0045184 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0046907 GO:0046982 GO:0046983 GO:0048367 GO:0048438 GO:0048506 GO:0048507 GO:0048509 GO:0048510 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048580 GO:0048581 GO:0048583 GO:0048584 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051169 GO:0051170 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051234 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051254 GO:0051641 GO:0051649 GO:0060255 GO:0061458 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0080090 GO:0080134 GO:0090079 GO:0090567 GO:0097159 GO:0098727 GO:0140110 GO:1901363 GO:1901700 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000242 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418
Pfam Domains
Protein Families
K-box SRF-TF

Protein Analysis

205

Amino Acids

22.49

Weight (kDa)

5.08

Isoelectric Point (pI)

45.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000389)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g03630 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27110 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_4g27440 FvH4_5g35400 FvH4_5g35400 FvH4_5g35400 FvH4_5g35400 FvH4_5g35401 FvH4_5g35401
malus_domestica MD08G1196900.v1.1 MD08G1197000.v1.1 MD08G1197200.v1.1 MD08G1197300.v1.1 MD15G1384500.v1.1 MD15G1384600.v1.1
prunus_persica Prupe.1G531100_v2.0.a1 Prupe.1G531100_v2.0.a1 Prupe.1G531400_v2.0.a1 Prupe.1G531600_v2.0.a1 Prupe.1G531700_v2.0.a1
pyrus_communis pycom08g16910 pycom08g16940 pycom08g16960 pycom15g34480 pycom15g34490
rosa_chinensis RchiOBHm_Chr4g0434911 RchiOBHm_Chr7g0205051 RchiOBHm_Chr7g0205061 RchiOBHm_Chr7g0205071 RchiOBHm_Chr7g0236801 RchiOBHm_Chr7g0236811
rosa_laevigata RLG00000001060 RLG00000003404 RLG00000003405 RLG00000006636
rosa_multiflora Rmu_sc0008447.1_g000001 Rmu_sc0008851.1_g000011 Rmu_sc0008851.1_g000015
rosa_roxburghii Rroxscaffold_3G00224810 Rroxscaffold_3G00224820 Rroxscaffold_3G00252600 Rroxscaffold_5G00376120
rosa_rugosa Rorug04G0280500 Rorug04G0280600 Rorug04G0280700 Rorug04G0280800 Rorug04G0280900 Rorug04G0281000 Rorug04G0281100 Rorug07G0087100 Rorug07G0087200 Rorug07G0087200 Rorug07G0087300 Rorug07G0299300 Rorug07G0299400 Rorug07G0299500
rosa_samantha Rh4AG336000 Rh4BG344500 Rh4CG358900 Rh4DG338500 Rh7AG218200 Rh7AG218300 Rh7AG454500 Rh7AG454700 Rh7BG214900 Rh7BG224100 Rh7BG425700 Rh7BG425800 Rh7BG425900 Rh7CG231500 Rh7CG473200 Rh7CG473300 Rh7DG225600 Rh7DG225800 Rh7DG442500 Rh7DG442600
rosa_wichuraiana Rw4G029320 Rw7G018890 Rw7G018930 Rw7G037730 Rw7G037740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 564
AccII CGCG 2 cut(s) 84, 228
AccIII TCCGGA 1 cut(s) 95
AciI CCGC 1 cut(s) 226
AclWI GGATC 2 cut(s) 18, 261
AfaI GTAC 2 cut(s) 131, 462
AfiI CCNNNNNNNGG 2 cut(s) 11, 611
AgsI TTSAA 4 cut(s) 146, 283, 305, 371
AluBI AGCT 7 cut(s) 51, 178, 184, 383, 455, 534, 587
AluI AGCT 7 cut(s) 51, 178, 184, 383, 455, 534, 587
Alw21I GWGCWC 1 cut(s) 180
AlwI GGATC 2 cut(s) 18, 261
AlwNI CAGNNNCTG 1 cut(s) 537
Aor13HI TCCGGA 1 cut(s) 95
AoxI GGCC 1 cut(s) 13
ApeKI GCWGC 3 cut(s) 531, 534, 537
AspLEI GCGC 3 cut(s) 84, 139, 542
AspS9I GGNCC 1 cut(s) 14
AsuHPI GGTGA 2 cut(s) 260, 365
AsuNHI GCTAGC 1 cut(s) 527
BanII GRGCYC 1 cut(s) 180
Bbv12I GWGCWC 1 cut(s) 180
BbvI GCAGC 3 cut(s) 521, 524, 543
BccI CCATC 2 cut(s) 175, 415
BceAI ACGGC 2 cut(s) 303, 504
BfaI CTAG 1 cut(s) 528
BfmI CTRYAG 1 cut(s) 46
BisI GCNGC 3 cut(s) 532, 535, 538
BlsI GCNGC 3 cut(s) 533, 536, 539
BmgT120I GGNCC 1 cut(s) 14
BmiI GGNNCC 1 cut(s) 165
BmsI GCATC 1 cut(s) 201
BmtI GCTAGC 1 cut(s) 531
BpmI CTGGAG 1 cut(s) 164
Bpu10I CCTNAGC 2 cut(s) 233, 583
BpuEI CTTGAG 1 cut(s) 194
BsaJI CCNNGG 3 cut(s) 333, 468, 610
BsaWI WCCGGW 1 cut(s) 95
Bsc4I CCNNNNNNNGG 2 cut(s) 11, 611
Bse1I ACTGG 1 cut(s) 550
BseAI TCCGGA 1 cut(s) 95
BseDI CCNNGG 3 cut(s) 333, 468, 610
BseGI GGATG 3 cut(s) 121, 280, 432
BseLI CCNNNNNNNGG 2 cut(s) 11, 611
BseMII CTCAG 1 cut(s) 375
BseNI ACTGG 1 cut(s) 550
BseRI GAGGAG 1 cut(s) 308
BseXI GCAGC 3 cut(s) 521, 524, 543
Bsh1236I CGCG 2 cut(s) 84, 228
BshFI GGCC 1 cut(s) 15
BsiHKAI GWGCWC 1 cut(s) 180
BsiSI CCGG 1 cut(s) 96
BslI CCNNNNNNNGG 2 cut(s) 11, 611
BsnI GGCC 1 cut(s) 15
Bsp1286I GDGCHC 1 cut(s) 180
Bsp13I TCCGGA 1 cut(s) 95
Bsp143I GATC 3 cut(s) 23, 187, 253
BspACI CCGC 1 cut(s) 226
BspANI GGCC 1 cut(s) 15
BspCNI CTCAG 1 cut(s) 376
BspEI TCCGGA 1 cut(s) 95
BspFNI CGCG 2 cut(s) 84, 228
BspLI GGNNCC 1 cut(s) 165
BspOI GCTAGC 1 cut(s) 531
BspPI GGATC 2 cut(s) 18, 261
BsrI ACTGG 1 cut(s) 550
BssECI CCNNGG 3 cut(s) 333, 468, 610
BssMI GATC 3 cut(s) 23, 187, 253
BssT1I CCWWGG 2 cut(s) 333, 468
Bst4CI ACNGT 1 cut(s) 611
BstAPI GCANNNNNTGC 1 cut(s) 537
BstC8I GCNNGC 3 cut(s) 106, 230, 529
BstDEI CTNAG 4 cut(s) 233, 314, 384, 583
BstDSI CCRYGG 1 cut(s) 610
BstF5I GGATG 3 cut(s) 121, 280, 432
BstFNI CGCG 2 cut(s) 84, 228
BstHHI GCGC 3 cut(s) 84, 139, 542
BstKTI GATC 3 cut(s) 26, 190, 256
BstMBI GATC 3 cut(s) 23, 187, 253
BstMWI GCNNNNNNNGC 4 cut(s) 371, 380, 524, 537
BstSFI CTRYAG 1 cut(s) 46
BstUI CGCG 2 cut(s) 84, 228
BstV1I GCAGC 3 cut(s) 521, 524, 543
BstX2I RGATCY 1 cut(s) 253
BstYI RGATCY 1 cut(s) 253
BsuRI GGCC 1 cut(s) 15
BtgI CCRYGG 1 cut(s) 610
BtgZI GCGATG 1 cut(s) 78
BtsCI GGATG 3 cut(s) 121, 280, 432
Cac8I GCNNGC 3 cut(s) 106, 230, 529
CaiI CAGNNNCTG 1 cut(s) 537
CfoI GCGC 3 cut(s) 84, 139, 542
Cfr13I GGNCC 1 cut(s) 14
Csp6I GTAC 2 cut(s) 130, 461
CviAII CATG 1 cut(s) 54
CviQI GTAC 2 cut(s) 130, 461
DdeI CTNAG 4 cut(s) 233, 314, 384, 583
DpnI GATC 3 cut(s) 25, 189, 255
DpnII GATC 3 cut(s) 23, 187, 253
Ecl136II GAGCTC 1 cut(s) 178
Eco130I CCWWGG 2 cut(s) 333, 468
Eco24I GRGCYC 1 cut(s) 180
Eco32I GATATC 2 cut(s) 432, 481
Eco53kI GAGCTC 1 cut(s) 178
EcoICRI GAGCTC 1 cut(s) 178
EcoO109I RGGNCCY 1 cut(s) 14
EcoRV GATATC 2 cut(s) 432, 481
EcoT14I CCWWGG 2 cut(s) 333, 468
EcoT38I GRGCYC 1 cut(s) 180
ErhI CCWWGG 2 cut(s) 333, 468
FaeI CATG 1 cut(s) 57
FaiI YATR 5 cut(s) 55, 206, 272, 350, 362
FalI AAGNNNNNCTT 2 cut(s) 297, 329
FatI CATG 1 cut(s) 53
FauI CCCGC 1 cut(s) 233
FblI GTMKAC 1 cut(s) 564
Fnu4HI GCNGC 3 cut(s) 532, 535, 538
FokI GGATG 3 cut(s) 128, 287, 439
FriOI GRGCYC 1 cut(s) 180
Fsp4HI GCNGC 3 cut(s) 532, 535, 538
FspBI CTAG 1 cut(s) 528
GlaI GCGC 3 cut(s) 83, 138, 541
GluI GCNGC 3 cut(s) 532, 535, 538
GsuI CTGGAG 1 cut(s) 164
HaeIII GGCC 1 cut(s) 15
HapII CCGG 1 cut(s) 96
HhaI GCGC 3 cut(s) 84, 139, 542
Hin1II CATG 1 cut(s) 57
Hin6I GCGC 3 cut(s) 82, 137, 540
HinP1I GCGC 3 cut(s) 82, 137, 540
HincII GTYRAC 1 cut(s) 565
HindII GTYRAC 1 cut(s) 565
HinfI GANTC 5 cut(s) 68, 86, 473, 512, 566
HpaII CCGG 1 cut(s) 96
HphI GGTGA 2 cut(s) 260, 365
Hpy166II GTNNAC 2 cut(s) 461, 565
Hpy188I TCNGA 2 cut(s) 478, 511
Hpy188III TCNNGA 4 cut(s) 27, 96, 173, 257
Hpy8I GTNNAC 2 cut(s) 461, 565
HpyAV CCTTC 3 cut(s) 254, 299, 491
HpyCH4III ACNGT 1 cut(s) 611
HpyCH4V TGCA 2 cut(s) 125, 215
HpyF10VI GCNNNNNNNGC 4 cut(s) 371, 380, 524, 537
HpyF3I CTNAG 4 cut(s) 233, 314, 384, 583
Hsp92II CATG 1 cut(s) 57
HspAI GCGC 3 cut(s) 82, 137, 540
Kpn2I TCCGGA 1 cut(s) 95
Kzo9I GATC 3 cut(s) 23, 187, 253
LmnI GCTCC 3 cut(s) 163, 183, 380
LpnPI CCDG 7 cut(s) 64, 109, 194, 242, 441, 531, 570
Lsp1109I GCAGC 3 cut(s) 521, 524, 543
LweI GCATC 1 cut(s) 201
MaeI CTAG 1 cut(s) 528
MalI GATC 3 cut(s) 25, 189, 255
MboI GATC 3 cut(s) 23, 187, 253
MboII GAAGA 4 cut(s) 295, 350, 506, 543
MflI RGATCY 1 cut(s) 253
MhlI GDGCHC 1 cut(s) 180
MluCI AATT 1 cut(s) 287
MlyI GAGTC 3 cut(s) 77, 482, 560
MmeI TCCRAC 3 cut(s) 141, 456, 459
MnlI CCTC 5 cut(s) 5, 244, 286, 289, 302
MroI TCCGGA 1 cut(s) 95
MseI TTAA 1 cut(s) 410
MspA1I CMGCKG 1 cut(s) 534
MspI CCGG 1 cut(s) 96
MvnI CGCG 2 cut(s) 84, 228
MwoI GCNNNNNNNGC 4 cut(s) 371, 380, 524, 537
NdeII GATC 3 cut(s) 23, 187, 253
NheI GCTAGC 1 cut(s) 527
NlaIII CATG 1 cut(s) 57
NlaIV GGNNCC 1 cut(s) 165
PfeI GAWTC 2 cut(s) 86, 512
PkrI GCNGC 3 cut(s) 533, 536, 539
PleI GAGTC 3 cut(s) 76, 481, 560
PpsI GAGTC 3 cut(s) 76, 481, 560
Psp124BI GAGCTC 1 cut(s) 180
PspN4I GGNNCC 1 cut(s) 165
PspPI GGNCC 1 cut(s) 14
PstNI CAGNNNCTG 1 cut(s) 537
PsuI RGATCY 1 cut(s) 253
PvuII CAGCTG 1 cut(s) 534
RsaI GTAC 2 cut(s) 131, 462
RsaNI GTAC 2 cut(s) 130, 461
SacI GAGCTC 1 cut(s) 180
SalI GTCGAC 1 cut(s) 563
SaqAI TTAA 1 cut(s) 410
SatI GCNGC 3 cut(s) 532, 535, 538
Sau3AI GATC 3 cut(s) 23, 187, 253
Sau96I GGNCC 1 cut(s) 14
SchI GAGTC 3 cut(s) 77, 482, 560
SduI GDGCHC 1 cut(s) 180
SfaNI GCATC 1 cut(s) 201
SfcI CTRYAG 1 cut(s) 46
SmlI CTYRAG 1 cut(s) 173
SmoI CTYRAG 1 cut(s) 173
Sse9I AATT 1 cut(s) 287
SsiI CCGC 1 cut(s) 226
SspMI CTAG 1 cut(s) 528
SstI GAGCTC 1 cut(s) 180
StyI CCWWGG 2 cut(s) 333, 468
TaaI ACNGT 1 cut(s) 611
TaqI TCGA 2 cut(s) 10, 564
TasI AATT 1 cut(s) 287
TatI WGTACW 1 cut(s) 460
TfiI GAWTC 2 cut(s) 86, 512
Tru1I TTAA 1 cut(s) 410
Tru9I TTAA 1 cut(s) 410
TseI GCWGC 3 cut(s) 531, 534, 537
TspDTI ATGAA 1 cut(s) 257
XmiI GTMKAC 1 cut(s) 564
XspI CTAG 1 cut(s) 528
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.