FvH4_3g20951

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000885
Physical Location & Seq
Reverse (-)
13984302 .. 13985232
931 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g20951.t1

Sequence Viewer

Length: 675 bp
ATGGGTGAGATAAGACTTGGCGTTAACTATGGCGGAAAGTGGGTTGGTTCTGTCTACATAGGTGGTAAGACAGAAGAAATAGTTGTTTCAGAAGATATTACTTATAACGAGCTTCTCGATCAACTGTATCATATTGTTGGATTAATTCCAAATGAAAATGAGATCAAGATCAGTACAATTGATGAATCAAAATCACCGGCTTATCCTGTGGAGATAATCAATGATTTTGACCTCAAAACTTTCATTGATCAGAACGTTTCTTCAGATATGCTCTTGAAGCATCCATTGAGGAATTCCTCTCGGAGCAGAAGGATGGAAATTAGAGTTTTGGTTAATCATGATGGTGAATGGGTGAATTCTACATACGTAGGTGGCAAGACGAAAGGAATAATAATCTCAGAGGACATTACATATCAAGAACTTGTTGATAGATTGTGTGCTGTTGTGGGAGTTGATCCAAATGAATATAAGTTGATTATGAAGACTGCATATAAATCAAATCTACCTACTCAACCTGTGGAGATAATCGATGAAGAAAGCCTTGCATTTTTCATTCACGATGAGAATCTTTCAGTGGGTATGAGCTCCATATTTACTTTGTGTACTACTCTTGAACGACGAGAATTTCCCAATGGAAGGTATGGACTCTCTTTAATTTGGTCGTGTATTTCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_3 LRR_8 NB-ARC TIR

Protein Analysis

225

Amino Acids

25.34

Weight (kDa)

4.8

Isoelectric Point (pI)

42.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 105
AccI GTMKAC 1 cut(s) 54
AciI CCGC 1 cut(s) 33
AclI AACGTT 1 cut(s) 255
AclWI GGATC 1 cut(s) 449
AcsI RAATTY 3 cut(s) 292, 355, 623
AcuI CTGAAG 1 cut(s) 246
AfaI GTAC 2 cut(s) 175, 604
AfiI CCNNNNNNNGG 1 cut(s) 636
AgsI TTSAA 2 cut(s) 277, 614
AluBI AGCT 2 cut(s) 112, 585
AluI AGCT 2 cut(s) 112, 585
Alw21I GWGCWC 1 cut(s) 587
AlwI GGATC 1 cut(s) 449
ApoI RAATTY 3 cut(s) 292, 355, 623
AseI ATTAAT 1 cut(s) 143
AsuHPI GGTGA 4 cut(s) 17, 186, 356, 364
BanII GRGCYC 1 cut(s) 587
BbsI GAAGAC 1 cut(s) 488
Bbv12I GWGCWC 1 cut(s) 587
BccI CCATC 2 cut(s) 307, 335
BclI TGATCA 1 cut(s) 247
BmsI GCATC 1 cut(s) 289
BpiI GAAGAC 1 cut(s) 488
Bsa29I ATCGAT 1 cut(s) 528
BsaAI YACGTR 1 cut(s) 367
BsaBI GATNNNNATC 2 cut(s) 167, 564
Bsc4I CCNNNNNNNGG 1 cut(s) 636
Bse118I RCCGGY 1 cut(s) 196
Bse8I GATNNNNATC 2 cut(s) 167, 564
BseCI ATCGAT 1 cut(s) 528
BseGI GGATG 2 cut(s) 280, 318
BseJI GATNNNNATC 2 cut(s) 167, 564
BseLI CCNNNNNNNGG 1 cut(s) 636
BseMII CTCAG 1 cut(s) 411
BshVI ATCGAT 1 cut(s) 528
BsiHKAI GWGCWC 1 cut(s) 587
BsiSI CCGG 1 cut(s) 197
BslI CCNNNNNNNGG 1 cut(s) 636
Bsp1286I GDGCHC 1 cut(s) 587
Bsp143I GATC 5 cut(s) 118, 162, 168, 247, 454
BspACI CCGC 1 cut(s) 33
BspCNI CTCAG 1 cut(s) 410
BspDI ATCGAT 1 cut(s) 528
BspHI TCATGA 1 cut(s) 337
BspPI GGATC 1 cut(s) 449
BsrFI RCCGGY 1 cut(s) 196
BssAI RCCGGY 1 cut(s) 196
BssMI GATC 5 cut(s) 118, 162, 168, 247, 454
Bst4CI ACNGT 1 cut(s) 126
BstBAI YACGTR 1 cut(s) 367
BstDEI CTNAG 1 cut(s) 397
BstF5I GGATG 2 cut(s) 280, 318
BstKTI GATC 5 cut(s) 121, 165, 171, 250, 457
BstMBI GATC 5 cut(s) 118, 162, 168, 247, 454
BstMWI GCNNNNNNNGC 1 cut(s) 277
BstSNI TACGTA 1 cut(s) 367
BstV2I GAAGAC 1 cut(s) 488
Bsu15I ATCGAT 1 cut(s) 528
BsuTUI ATCGAT 1 cut(s) 528
BtsCI GGATG 2 cut(s) 280, 318
BtsIMutI CAGTG 1 cut(s) 579
CciI TCATGA 1 cut(s) 337
Cfr10I RCCGGY 1 cut(s) 196
ClaI ATCGAT 1 cut(s) 528
Csp6I GTAC 2 cut(s) 174, 603
CviAII CATG 1 cut(s) 338
CviJI RGCY 4 cut(s) 112, 200, 540, 585
CviKI_1 RGCY 4 cut(s) 112, 200, 540, 585
CviQI GTAC 2 cut(s) 174, 603
DdeI CTNAG 1 cut(s) 397
DpnI GATC 5 cut(s) 120, 164, 170, 249, 456
DpnII GATC 5 cut(s) 118, 162, 168, 247, 454
EciI GGCGGA 1 cut(s) 48
Ecl136II GAGCTC 1 cut(s) 585
Eco105I TACGTA 1 cut(s) 367
Eco24I GRGCYC 1 cut(s) 587
Eco53kI GAGCTC 1 cut(s) 585
Eco57I CTGAAG 1 cut(s) 246
EcoICRI GAGCTC 1 cut(s) 585
EcoRI GAATTC 2 cut(s) 292, 355
EcoT38I GRGCYC 1 cut(s) 587
FaeI CATG 1 cut(s) 341
FalI AAGNNNNNCTT 2 cut(s) 525, 557
FatI CATG 1 cut(s) 337
FbaI TGATCA 1 cut(s) 247
FblI GTMKAC 1 cut(s) 54
FokI GGATG 2 cut(s) 267, 325
FriOI GRGCYC 1 cut(s) 587
HapII CCGG 1 cut(s) 197
Hin1II CATG 1 cut(s) 341
HincII GTYRAC 1 cut(s) 25
HindII GTYRAC 1 cut(s) 25
HinfI GANTC 3 cut(s) 185, 565, 645
HpaI GTTAAC 1 cut(s) 25
HpaII CCGG 1 cut(s) 197
HphI GGTGA 4 cut(s) 17, 186, 356, 364
Hpy166II GTNNAC 3 cut(s) 25, 55, 603
Hpy188I TCNGA 5 cut(s) 91, 252, 265, 303, 400
Hpy188III TCNNGA 7 cut(s) 116, 166, 274, 338, 416, 557, 611
Hpy8I GTNNAC 3 cut(s) 25, 55, 603
Hpy99I CGWCG 1 cut(s) 621
HpyAV CCTTC 2 cut(s) 303, 630
HpyCH4III ACNGT 1 cut(s) 126
HpyCH4IV ACGT 2 cut(s) 255, 366
HpyCH4V TGCA 2 cut(s) 488, 545
HpyF10VI GCNNNNNNNGC 1 cut(s) 277
HpyF3I CTNAG 1 cut(s) 397
HpySE526I ACGT 2 cut(s) 255, 366
Hsp92II CATG 1 cut(s) 341
Ksp22I TGATCA 1 cut(s) 247
KspAI GTTAAC 1 cut(s) 25
Kzo9I GATC 5 cut(s) 118, 162, 168, 247, 454
LmnI GCTCC 2 cut(s) 303, 590
LpnPI CCDG 3 cut(s) 210, 219, 528
LweI GCATC 1 cut(s) 289
MaeII ACGT 2 cut(s) 255, 366
MalI GATC 5 cut(s) 120, 164, 170, 249, 456
MboI GATC 5 cut(s) 118, 162, 168, 247, 454
MboII GAAGA 5 cut(s) 86, 104, 252, 493, 545
MfeI CAATTG 1 cut(s) 177
MhlI GDGCHC 1 cut(s) 587
MluCI AATT 7 cut(s) 144, 177, 292, 318, 355, 623, 654
MlyI GAGTC 1 cut(s) 639
MmeI TCCRAC 1 cut(s) 118
MnlI CCTC 4 cut(s) 242, 282, 307, 394
MseI TTAA 4 cut(s) 24, 143, 333, 653
MslI CAYNNNNRTG 1 cut(s) 342
MspI CCGG 1 cut(s) 197
MunI CAATTG 1 cut(s) 177
MwoI GCNNNNNNNGC 1 cut(s) 277
NdeII GATC 5 cut(s) 118, 162, 168, 247, 454
NlaIII CATG 1 cut(s) 341
PagI TCATGA 1 cut(s) 337
PcsI WCGNNNNNNNCGW 2 cut(s) 114, 668
PfeI GAWTC 2 cut(s) 185, 565
PleI GAGTC 1 cut(s) 639
PpsI GAGTC 1 cut(s) 639
Ppu21I YACGTR 1 cut(s) 367
PshBI ATTAAT 1 cut(s) 143
PsiI TTATAA 1 cut(s) 105
Psp124BI GAGCTC 1 cut(s) 587
Psp1406I AACGTT 1 cut(s) 255
RsaI GTAC 2 cut(s) 175, 604
RsaNI GTAC 2 cut(s) 174, 603
RseI CAYNNNNRTG 1 cut(s) 342
SacI GAGCTC 1 cut(s) 587
SaqAI TTAA 4 cut(s) 24, 143, 333, 653
Sau3AI GATC 5 cut(s) 118, 162, 168, 247, 454
SchI GAGTC 1 cut(s) 639
SduI GDGCHC 1 cut(s) 587
SfaNI GCATC 1 cut(s) 289
SmiMI CAYNNNNRTG 1 cut(s) 342
SnaBI TACGTA 1 cut(s) 367
Sse9I AATT 7 cut(s) 144, 177, 292, 318, 355, 623, 654
SsiI CCGC 1 cut(s) 33
SstI GAGCTC 1 cut(s) 587
TaaI ACNGT 1 cut(s) 126
TaiI ACGT 2 cut(s) 258, 369
TaqI TCGA 2 cut(s) 117, 528
TasI AATT 7 cut(s) 144, 177, 292, 318, 355, 623, 654
TatI WGTACW 2 cut(s) 173, 602
TfiI GAWTC 2 cut(s) 185, 565
Tru1I TTAA 4 cut(s) 24, 143, 333, 653
Tru9I TTAA 4 cut(s) 24, 143, 333, 653
TscAI CASTG 1 cut(s) 579
TspDTI ATGAA 7 cut(s) 168, 198, 232, 477, 494, 541, 546
TspRI CASTG 1 cut(s) 579
VspI ATTAAT 1 cut(s) 143
XapI RAATTY 3 cut(s) 292, 355, 623
XmiI GTMKAC 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.