Prupe.1G184000_v2.0.a1

MULE transposase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000885
Physical Location & Seq
Forward (+)
16450513 .. 16452558
2046 bp
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UTR
Exon/CDS
Intron
Prupe.1G184000.1

Sequence Viewer

Length: 516 bp
ATGACAACAAGAAGAGGTATTGGTTCCCCTACAAATGATGCTGAAACTACGCAGCCCCCACCCGACAGCAAGGATGTTGGAGGTGGGAACTTCGGCAACAATTACTTCAACGTGGTTCTTATTGCATTTGTTCTGTTGGGATTGGCATACTACTCAACAAGTACCACAAGTGAAATGTCTAAATTGACAATTTTGATTAACTATGGTGGGAGGTGGGTTGATTCAAGGTACGAAAATTTCAAAACTAGAGCAGTACTCGTTTCCAATACAATTACAGTGAAGGAGCTTCAGAAGCAAGTATATGACATTATCAATGTGGACCCAAATGACTATGAGATAACTATAATAGCTATGTATGAAACAATGAAAAGTGCATTGCCTGTGGAGATAGCCGATGATGATGACGCGAGAGCTTTTATTTTTGAAAGTCGTTTAAAGTCTTACAAGATTCCATTGTGCATTACATTGGAGGAGACCAACCTTCTGGGGTCTCCACAAGTTCCTGATTATTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DBD_Tnp_Mut MULE SWIM

Protein Analysis

172

Amino Acids

19.1

Weight (kDa)

4.59

Isoelectric Point (pI)

36.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 407
AcsI RAATTY 1 cut(s) 235
AcuI CTGAAG 1 cut(s) 272
AfaI GTAC 3 cut(s) 163, 230, 255
AgsI TTSAA 4 cut(s) 109, 225, 241, 425
AluBI AGCT 3 cut(s) 286, 350, 413
AluI AGCT 3 cut(s) 286, 350, 413
Alw26I GTCTC 2 cut(s) 467, 495
ApeKI GCWGC 1 cut(s) 52
ApoI RAATTY 1 cut(s) 235
AspS9I GGNCC 1 cut(s) 319
AvaII GGWCC 1 cut(s) 319
BbvI GCAGC 1 cut(s) 64
BcoDI GTCTC 2 cut(s) 467, 495
BfaI CTAG 2 cut(s) 246, 514
BisI GCNGC 1 cut(s) 53
BlsI GCNGC 1 cut(s) 54
BmcAI AGTACT 1 cut(s) 255
Bme18I GGWCC 1 cut(s) 319
BmgT120I GGNCC 1 cut(s) 319
BmiI GGNNCC 2 cut(s) 25, 321
BmsI GCATC 1 cut(s) 28
BplI GAGNNNNNCTC 2 cut(s) 240, 272
BsaI GGTCTC 2 cut(s) 467, 495
Bse3DI GCAATG 1 cut(s) 374
BseGI GGATG 1 cut(s) 79
BseMI GCAATG 1 cut(s) 374
BseRI GAGGAG 1 cut(s) 485
BseXI GCAGC 1 cut(s) 64
Bsh1236I CGCG 1 cut(s) 407
BsmAI GTCTC 2 cut(s) 467, 495
Bso31I GGTCTC 2 cut(s) 467, 495
BspFNI CGCG 1 cut(s) 407
BspLI GGNNCC 2 cut(s) 25, 321
BspTNI GGTCTC 2 cut(s) 467, 495
BsrDI GCAATG 1 cut(s) 374
Bst4CI ACNGT 1 cut(s) 277
Bst6I CTCTTC 1 cut(s) 7
BstF5I GGATG 1 cut(s) 79
BstFNI CGCG 1 cut(s) 407
BstMAI GTCTC 2 cut(s) 467, 495
BstMWI GCNNNNNNNGC 1 cut(s) 292
BstUI CGCG 1 cut(s) 407
BstV1I GCAGC 1 cut(s) 64
BstXI CCANNNNNNTGG 1 cut(s) 484
BtsCI GGATG 1 cut(s) 79
BtsIMutI CAGTG 1 cut(s) 282
Cfr13I GGNCC 1 cut(s) 319
CseI GACGC 1 cut(s) 413
Csp6I GTAC 3 cut(s) 162, 229, 254
CviJI RGCY 5 cut(s) 55, 286, 350, 392, 413
CviKI_1 RGCY 5 cut(s) 55, 286, 350, 392, 413
CviQI GTAC 3 cut(s) 162, 229, 254
DraI TTTAAA 1 cut(s) 435
Eam1104I CTCTTC 1 cut(s) 7
EarI CTCTTC 1 cut(s) 7
Eco31I GGTCTC 2 cut(s) 467, 495
Eco47I GGWCC 1 cut(s) 319
Eco57I CTGAAG 1 cut(s) 272
FaiI YATR 8 cut(s) 148, 204, 301, 303, 333, 344, 353, 357
Fnu4HI GCNGC 1 cut(s) 53
FokI GGATG 1 cut(s) 86
Fsp4HI GCNGC 1 cut(s) 53
FspBI CTAG 2 cut(s) 246, 514
GluI GCNGC 1 cut(s) 53
HgaI GACGC 1 cut(s) 413
HinfI GANTC 2 cut(s) 221, 448
Hpy166II GTNNAC 1 cut(s) 319
Hpy188I TCNGA 1 cut(s) 291
Hpy188III TCNNGA 1 cut(s) 503
Hpy8I GTNNAC 1 cut(s) 319
HpyAV CCTTC 2 cut(s) 274, 491
HpyCH4III ACNGT 1 cut(s) 277
HpyCH4IV ACGT 1 cut(s) 111
HpyCH4V TGCA 3 cut(s) 125, 374, 459
HpyF10VI GCNNNNNNNGC 1 cut(s) 292
HpySE526I ACGT 1 cut(s) 111
LmnI GCTCC 1 cut(s) 283
LpnPI CCDG 2 cut(s) 393, 470
Lsp1109I GCAGC 1 cut(s) 64
LweI GCATC 1 cut(s) 28
MaeI CTAG 2 cut(s) 246, 514
MaeII ACGT 1 cut(s) 111
MboII GAAGA 1 cut(s) 24
MluCI AATT 5 cut(s) 100, 182, 189, 235, 270
MmeI TCCRAC 1 cut(s) 58
MnlI CCTC 4 cut(s) 8, 74, 204, 463
MseI TTAA 2 cut(s) 198, 434
MvnI CGCG 1 cut(s) 407
MwoI GCNNNNNNNGC 1 cut(s) 292
NlaIV GGNNCC 2 cut(s) 25, 321
PfeI GAWTC 2 cut(s) 221, 448
PkrI GCNGC 1 cut(s) 54
PspN4I GGNNCC 2 cut(s) 25, 321
PspPI GGNCC 1 cut(s) 319
RsaI GTAC 3 cut(s) 163, 230, 255
RsaNI GTAC 3 cut(s) 162, 229, 254
SaqAI TTAA 2 cut(s) 198, 434
SatI GCNGC 1 cut(s) 53
Sau96I GGNCC 1 cut(s) 319
ScaI AGTACT 1 cut(s) 255
SetI ASST 9 cut(s) 19, 85, 114, 215, 230, 288, 352, 415, 483
SfaNI GCATC 1 cut(s) 28
SinI GGWCC 1 cut(s) 319
Sse9I AATT 5 cut(s) 100, 182, 189, 235, 270
SspMI CTAG 2 cut(s) 246, 514
TaaI ACNGT 1 cut(s) 277
TaiI ACGT 1 cut(s) 114
TasI AATT 5 cut(s) 100, 182, 189, 235, 270
TatI WGTACW 1 cut(s) 253
TfiI GAWTC 2 cut(s) 221, 448
Tru1I TTAA 2 cut(s) 198, 434
Tru9I TTAA 2 cut(s) 198, 434
TscAI CASTG 1 cut(s) 282
TseI GCWGC 1 cut(s) 52
TspDTI ATGAA 2 cut(s) 372, 380
TspRI CASTG 1 cut(s) 282
VpaK11BI GGWCC 1 cut(s) 319
XapI RAATTY 1 cut(s) 235
XspI CTAG 2 cut(s) 246, 514
ZrmI AGTACT 1 cut(s) 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.