Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0041591.1

Orthogroup ID

OG0000885

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1047

Gene Structure 1047 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0041591.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 772 bp

gagtattgaagttagagttttggttaaccatgatggggagtgggtgaattccacatatgtcggtggcaaaacgaaaggaataataatctcagaggacattacgtatcaagaacttgttgatagagtgtatggtgttgtgggagttgatccaaatgaatataagttgattctgaagactgcatataaatcaaatctacctactcaacctgtggagataatcgatgatgaaggccttgcatttttcatccacgatgagaatctttcactgggtatgagctccatatttactttgtgcactactcttgaacgacgggcatttcctaatggaaggatggagacgtcatcacaaaatagtgctacgatggagtcatcaaaaagtaattgtacaacacatctgaggaggtttgggacatatcagagttgcattccttctgtgacacctgatcagatgccttatcttcatactcaagttagaccgttgtcaccaaatgttccttgtatgcagcagcagcagcaacagcaacttttctaccagcaacaacaacattcttaccaacaaacgatgtctcagccttgctaccagcaatatcaaccatcctttcagcagccgcagcctcattaccaacaacttcatccttcctacatgcagctgcagccttgctatgagcagtatcaaccattctttcagcagccgcaacctccgcaccaacaacttcatccttcctacacgcagccgccaccaccaattcatcaagtgccttactcgctttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_3 LRR_8 NB-ARC TIR

Protein Analysis

256

Amino Acids

29.62

Weight (kDa)

5.89

Isoelectric Point (pI)

66.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000885)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g26890 FvH4_2g26890 FvH4_2g26890 FvH4_3g20951 FvH4_3g20960 FvH4_3g20962
malus_domestica	MD03G1083300.v1.1 MD03G1083600.v1.1 MD08G1022000.v1.1 MD10G1261100.v1.1
prunus_persica	Prupe.1G183900_v2.0.a1 Prupe.1G184000_v2.0.a1
pyrus_communis	pycom03g06620 pycom05g26220 pycom10g21740
rosa_chinensis	RchiOBHm_Chr3g0475491 RchiOBHm_Chr5g0034591 RchiOBHm_Chr5g0035231 RchiOBHm_Chr5g0035371 RchiOBHm_Chr5g0035701 RchiOBHm_Chr5g0035711
rosa_laevigata	RLG00000005586 RLG00000022983 RLG00000033611 RLG00000033626 RLG00000033630 RLG00000033640 RLG00000033646 RLG00000033651 RLG00000033652
rosa_multiflora	Rmu_co8204696.1_g000001 Rmu_co8330583.1_g000001 Rmu_sc0001493.1_g000069 Rmu_sc0001493.1_g000077 Rmu_sc0001493.1_g000082 Rmu_sc0002460.1_g000096 Rmu_sc0002482.1_g000010 Rmu_sc0002482.1_g000012 Rmu_sc0002935.1_g000002 Rmu_sc0017377.1_g000001 Rmu_sc0026350.1_g000001 Rmu_sc0041591.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042270 Rroxscaffold_1G00044790 Rroxscaffold_1G00044920 Rroxscaffold_1G00045020 Rroxscaffold_1G00045140 Rroxscaffold_1G00045740
rosa_rugosa	Rorug05G0146700 Rorug05G0146800 Rorug05G0150900 Rorug05G0151900
rosa_samantha	Rh5CG274900 Rh5CG276400 Rh5DG247800 Rh5DG266600 Rh5DG465900
rosa_wichuraiana	Rw0G005840 Rw5G021800 Rw5G021890 Rw5G022260 Rw5G022350 Rw5G022510 Rw5G022560 Rw5G023950 Rw5G023960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	342
AciI	CCGC	4 cut(s)	609, 693, 702, 735
AclWI	GGATC	1 cut(s)	141
AcsI	RAATTY	1 cut(s)	47
AcuI	CTGAAG	1 cut(s)	192
AcyI	GRCGYC	1 cut(s)	339
AfaI	GTAC	1 cut(s)	386
AfiI	CCNNNNNNNGG	1 cut(s)	35
AgsI	TTSAA	2 cut(s)	9, 306
AluBI	AGCT	2 cut(s)	277, 650
AluI	AGCT	2 cut(s)	277, 650
Alw21I	GWGCWC	2 cut(s)	279, 297
Alw26I	GTCTC	2 cut(s)	330, 571
Alw44I	GTGCAC	1 cut(s)	293
AlwI	GGATC	1 cut(s)	141
AoxI	GGCC	1 cut(s)	230
ApaLI	GTGCAC	1 cut(s)	293
ApoI	RAATTY	1 cut(s)	47
AsuHPI	GGTGA	2 cut(s)	56, 475
BaeGI	GKGCMC	1 cut(s)	297
BanII	GRGCYC	1 cut(s)	279
BbsI	GAAGAC	1 cut(s)	180
Bbv12I	GWGCWC	2 cut(s)	279, 297
BccI	CCATC	4 cut(s)	27, 326, 356, 602
BclI	TGATCA	1 cut(s)	443
BcoDI	GTCTC	2 cut(s)	330, 571
BfmI	CTRYAG	1 cut(s)	651
BmrI	ACTGGG	1 cut(s)	276
BmsI	GCATC	1 cut(s)	439
BmuI	ACTGGG	1 cut(s)	276
BoxI	GACNNNNGTC	1 cut(s)	479
BpiI	GAAGAC	1 cut(s)	180
BpuEI	CTTGAG	1 cut(s)	451
Bsa29I	ATCGAT	1 cut(s)	220
BsaAI	YACGTR	1 cut(s)	103
BsaBI	GATNNNNATC	1 cut(s)	256
BsaHI	GRCGYC	1 cut(s)	339
Bsc4I	CCNNNNNNNGG	1 cut(s)	35
Bse1I	ACTGG	1 cut(s)	271
Bse8I	GATNNNNATC	1 cut(s)	256
BseCI	ATCGAT	1 cut(s)	220
BseGI	GGATG	5 cut(s)	244, 337, 594, 632, 716
BseJI	GATNNNNATC	1 cut(s)	256
BseLI	CCNNNNNNNGG	1 cut(s)	35
BseMII	CTCAG	3 cut(s)	103, 387, 582
BseNI	ACTGG	1 cut(s)	271
BseRI	GAGGAG	1 cut(s)	413
BseSI	GKGCMC	1 cut(s)	297
BshFI	GGCC	1 cut(s)	232
BshVI	ATCGAT	1 cut(s)	220
BsiHKAI	GWGCWC	2 cut(s)	279, 297
BslFI	GGGAC	1 cut(s)	422
BslI	CCNNNNNNNGG	1 cut(s)	35
BsmAI	GTCTC	2 cut(s)	330, 571
BsmBI	CGTCTC	1 cut(s)	330
BsmFI	GGGAC	1 cut(s)	422
BsmI	GAATGC	1 cut(s)	424
BsnI	GGCC	1 cut(s)	232
Bsp1286I	GDGCHC	2 cut(s)	279, 297
Bsp1407I	TGTACA	1 cut(s)	384
Bsp143I	GATC	2 cut(s)	146, 443
BspACI	CCGC	4 cut(s)	609, 693, 702, 735
BspANI	GGCC	1 cut(s)	232
BspCNI	CTCAG	3 cut(s)	102, 388, 581
BspDI	ATCGAT	1 cut(s)	220
BspMAI	CTGCAG	1 cut(s)	655
BspPI	GGATC	1 cut(s)	141
BsrGI	TGTACA	1 cut(s)	384
BsrI	ACTGG	1 cut(s)	271
BssMI	GATC	2 cut(s)	146, 443
BssNI	GRCGYC	1 cut(s)	339
Bst4CI	ACNGT	1 cut(s)	478
BstACI	GRCGYC	1 cut(s)	339
BstAUI	TGTACA	1 cut(s)	384
BstBAI	YACGTR	1 cut(s)	103
BstDEI	CTNAG	3 cut(s)	89, 396, 568
BstF5I	GGATG	5 cut(s)	244, 337, 594, 632, 716
BstKTI	GATC	2 cut(s)	149, 446
BstMAI	GTCTC	2 cut(s)	330, 571
BstMBI	GATC	2 cut(s)	146, 443
BstMWI	GCNNNNNNNGC	7 cut(s)	509, 512, 518, 611, 653, 701, 764
BstNSI	RCATGY	1 cut(s)	647
BstPAI	GACNNNNGTC	1 cut(s)	479
BstSFI	CTRYAG	1 cut(s)	651
BstSLI	GKGCMC	1 cut(s)	297
BstSNI	TACGTA	1 cut(s)	103
BstV2I	GAAGAC	1 cut(s)	180
Bsu15I	ATCGAT	1 cut(s)	220
BsuRI	GGCC	1 cut(s)	232
BsuTUI	ATCGAT	1 cut(s)	220
BtsCI	GGATG	5 cut(s)	244, 337, 594, 632, 716
BtsIMutI	CAGTG	1 cut(s)	264
ClaI	ATCGAT	1 cut(s)	220
Csp6I	GTAC	1 cut(s)	385
CviAII	CATG	2 cut(s)	30, 644
CviJI	RGCY	9 cut(s)	232, 277, 572, 608, 614, 650, 656, 692, 734
CviKI_1	RGCY	9 cut(s)	232, 277, 572, 608, 614, 650, 656, 692, 734
CviQI	GTAC	1 cut(s)	385
DdeI	CTNAG	3 cut(s)	89, 396, 568
DpnI	GATC	2 cut(s)	148, 445
DpnII	GATC	2 cut(s)	146, 443
Ecl136II	GAGCTC	1 cut(s)	277
Eco105I	TACGTA	1 cut(s)	103
Eco147I	AGGCCT	1 cut(s)	232
Eco24I	GRGCYC	1 cut(s)	279
Eco53kI	GAGCTC	1 cut(s)	277
Eco57I	CTGAAG	1 cut(s)	192
EcoICRI	GAGCTC	1 cut(s)	277
EcoRI	GAATTC	1 cut(s)	47
EcoT38I	GRGCYC	1 cut(s)	279
Esp3I	CGTCTC	1 cut(s)	330
FaeI	CATG	2 cut(s)	33, 647
FaqI	GGGAC	1 cut(s)	422
FatI	CATG	2 cut(s)	29, 643
FauNDI	CATATG	1 cut(s)	56
FbaI	TGATCA	1 cut(s)	443
FokI	GGATG	5 cut(s)	231, 344, 581, 619, 703
FriOI	GRGCYC	1 cut(s)	279
HaeIII	GGCC	1 cut(s)	232
Hin1I	GRCGYC	1 cut(s)	339
Hin1II	CATG	2 cut(s)	33, 647
HincII	GTYRAC	1 cut(s)	26
HindII	GTYRAC	1 cut(s)	26
HinfI	GANTC	3 cut(s)	167, 257, 366
HpaI	GTTAAC	1 cut(s)	26
HphI	GGTGA	2 cut(s)	56, 475
Hpy166II	GTNNAC	2 cut(s)	26, 295
Hpy188I	TCNGA	5 cut(s)	92, 172, 397, 418, 448
Hpy188III	TCNNGA	2 cut(s)	108, 303
Hpy8I	GTNNAC	2 cut(s)	26, 295
Hpy99I	CGWCG	1 cut(s)	313
HpyAV	CCTTC	5 cut(s)	222, 322, 439, 646, 730
HpyCH4III	ACNGT	1 cut(s)	478
HpyCH4IV	ACGT	2 cut(s)	102, 339
HpyCH4V	TGCA	7 cut(s)	180, 237, 295, 424, 503, 647, 653
HpyF10VI	GCNNNNNNNGC	7 cut(s)	509, 512, 518, 611, 653, 701, 764
HpyF3I	CTNAG	3 cut(s)	89, 396, 568
HpySE526I	ACGT	2 cut(s)	102, 339
Hsp92I	GRCGYC	1 cut(s)	339
Hsp92II	CATG	2 cut(s)	33, 647
Ksp22I	TGATCA	1 cut(s)	443
KspAI	GTTAAC	1 cut(s)	26
Kzo9I	GATC	2 cut(s)	146, 443
LmnI	GCTCC	1 cut(s)	282
LpnPI	CCDG	5 cut(s)	220, 252, 454, 546, 594
LweI	GCATC	1 cut(s)	439
MaeII	ACGT	2 cut(s)	102, 339
MaeIII	GTNAC	2 cut(s)	434, 481
MalI	GATC	2 cut(s)	148, 445
MboI	GATC	2 cut(s)	146, 443
MboII	GAAGA	2 cut(s)	185, 450
MhlI	GDGCHC	2 cut(s)	279, 297
MluCI	AATT	3 cut(s)	47, 380, 745
MlyI	GAGTC	1 cut(s)	375
MnlI	CCTC	5 cut(s)	86, 391, 394, 625, 709
MseI	TTAA	1 cut(s)	25
MspA1I	CMGCKG	1 cut(s)	650
Mva1269I	GAATGC	1 cut(s)	424
MwoI	GCNNNNNNNGC	7 cut(s)	509, 512, 518, 611, 653, 701, 764
NdeI	CATATG	1 cut(s)	56
NdeII	GATC	2 cut(s)	146, 443
NlaIII	CATG	2 cut(s)	33, 647
NmuCI	GTSAC	2 cut(s)	434, 481
NspI	RCATGY	1 cut(s)	647
PceI	AGGCCT	1 cut(s)	232
PctI	GAATGC	1 cut(s)	424
PfeI	GAWTC	2 cut(s)	167, 257
PleI	GAGTC	1 cut(s)	374
PpsI	GAGTC	1 cut(s)	374
Ppu21I	YACGTR	1 cut(s)	103
PshAI	GACNNNNGTC	1 cut(s)	479
Psp124BI	GAGCTC	1 cut(s)	279
PstI	CTGCAG	1 cut(s)	655
PvuII	CAGCTG	1 cut(s)	650
RsaI	GTAC	1 cut(s)	386
RsaNI	GTAC	1 cut(s)	385
SacI	GAGCTC	1 cut(s)	279
SaqAI	TTAA	1 cut(s)	25
Sau3AI	GATC	2 cut(s)	146, 443
SchI	GAGTC	1 cut(s)	375
SduI	GDGCHC	2 cut(s)	279, 297
SetI	ASST	9 cut(s)	105, 200, 209, 279, 342, 405, 443, 652, 701
SfaNI	GCATC	1 cut(s)	439
SfcI	CTRYAG	1 cut(s)	651
SmlI	CTYRAG	1 cut(s)	466
SmoI	CTYRAG	1 cut(s)	466
SnaBI	TACGTA	1 cut(s)	103
Sse9I	AATT	3 cut(s)	47, 380, 745
SseBI	AGGCCT	1 cut(s)	232
SsiI	CCGC	4 cut(s)	609, 693, 702, 735
SstI	GAGCTC	1 cut(s)	279
StuI	AGGCCT	1 cut(s)	232
TaaI	ACNGT	1 cut(s)	478
TaiI	ACGT	2 cut(s)	105, 342
TaqI	TCGA	1 cut(s)	220
TasI	AATT	3 cut(s)	47, 380, 745
TatI	WGTACW	1 cut(s)	384
TauI	GCSGC	3 cut(s)	611, 695, 737
TfiI	GAWTC	2 cut(s)	167, 257
Tru1I	TTAA	1 cut(s)	25
Tru9I	TTAA	1 cut(s)	25
TscAI	CASTG	1 cut(s)	271
TseFI	GTSAC	2 cut(s)	434, 481
Tsp45I	GTSAC	2 cut(s)	434, 481
TspDTI	ATGAA	7 cut(s)	169, 233, 241, 450, 621, 705, 738
TspRI	CASTG	1 cut(s)	271
VneI	GTGCAC	1 cut(s)	293
XapI	RAATTY	1 cut(s)	47
XceI	RCATGY	1 cut(s)	647
ZraI	GACGTC	1 cut(s)	340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.