RchiOBHm_Chr3g0475491

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000885
Physical Location & Seq
Forward (+)
21247909 .. 21255317
7409 bp
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UTR
Exon/CDS
Intron
PRQ44099

Sequence Viewer

Length: 231 bp
ATGAGTTACCATTTTCTCATATGGAGGGAGAGGGGTTTAGGCAGGGCCGGCCCTGAGGGCTGCCGCCTAAGGCAGCCGCCTCAGGCCACCGGCTCTCGGGGGCCTCCGGAATTTGGATTTTCTGTATATAAGCTAAAGATAATATATATATATATATATATATATATATTACTATTTGCTGTAATAAGCACAAAGCCGCGCGTTGCTCCCGCGGAAGTGAAGCCAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

76

Amino Acids

8.7

Weight (kDa)

10.0

Isoelectric Point (pI)

34.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 199, 201, 212
AccIII TCCGGA 1 cut(s) 106
AciI CCGC 5 cut(s) 64, 77, 197, 210, 212
AcsI RAATTY 1 cut(s) 110
AfiI CCNNNNNNNGG 2 cut(s) 96, 113
AluBI AGCT 1 cut(s) 133
AluI AGCT 1 cut(s) 133
Ama87I CYCGRG 1 cut(s) 96
Aor13HI TCCGGA 1 cut(s) 106
AoxI GGCC 4 cut(s) 45, 49, 84, 101
ApeKI GCWGC 2 cut(s) 60, 73
ApoI RAATTY 1 cut(s) 110
AspLEI GCGC 1 cut(s) 201
AspS9I GGNCC 3 cut(s) 45, 50, 101
AvaI CYCGRG 1 cut(s) 96
AxyI CCTNAGG 3 cut(s) 54, 68, 81
BbvI GCAGC 2 cut(s) 47, 85
BglI GCCNNNNNGGC 1 cut(s) 57
BisI GCNGC 5 cut(s) 61, 64, 74, 77, 197
BlsI GCNGC 5 cut(s) 62, 65, 75, 78, 198
BmeT110I CYCGRG 1 cut(s) 96
BmgT120I GGNCC 3 cut(s) 45, 50, 101
BmiI GGNNCC 1 cut(s) 102
BsaJI CCNNGG 1 cut(s) 210
BsaWI WCCGGW 1 cut(s) 106
Bsc4I CCNNNNNNNGG 2 cut(s) 96, 113
Bse118I RCCGGY 2 cut(s) 47, 89
Bse21I CCTNAGG 3 cut(s) 54, 68, 81
BseAI TCCGGA 1 cut(s) 106
BseDI CCNNGG 1 cut(s) 210
BseLI CCNNNNNNNGG 2 cut(s) 96, 113
BseMII CTCAG 2 cut(s) 45, 95
BseXI GCAGC 2 cut(s) 47, 85
Bsh1236I CGCG 3 cut(s) 199, 201, 212
BshFI GGCC 4 cut(s) 47, 51, 86, 103
BsiHKCI CYCGRG 1 cut(s) 96
BsiSI CCGG 3 cut(s) 48, 90, 107
BslI CCNNNNNNNGG 2 cut(s) 96, 113
BsnI GGCC 4 cut(s) 47, 51, 86, 103
BsoBI CYCGRG 1 cut(s) 96
Bsp13I TCCGGA 1 cut(s) 106
BspACI CCGC 5 cut(s) 64, 77, 197, 210, 212
BspANI GGCC 4 cut(s) 47, 51, 86, 103
BspCNI CTCAG 2 cut(s) 46, 94
BspEI TCCGGA 1 cut(s) 106
BspFNI CGCG 3 cut(s) 199, 201, 212
BspLI GGNNCC 1 cut(s) 102
BsrFI RCCGGY 2 cut(s) 47, 89
BssAI RCCGGY 2 cut(s) 47, 89
BssECI CCNNGG 1 cut(s) 210
BstC8I GCNNGC 1 cut(s) 49
BstDEI CTNAG 3 cut(s) 54, 68, 81
BstDSI CCRYGG 1 cut(s) 210
BstFNI CGCG 3 cut(s) 199, 201, 212
BstHHI GCGC 1 cut(s) 201
BstMWI GCNNNNNNNGC 2 cut(s) 48, 57
BstUI CGCG 3 cut(s) 199, 201, 212
BstV1I GCAGC 2 cut(s) 47, 85
Bsu36I CCTNAGG 3 cut(s) 54, 68, 81
BsuRI GGCC 4 cut(s) 47, 51, 86, 103
BtgI CCRYGG 1 cut(s) 210
Cac8I GCNNGC 1 cut(s) 49
CfoI GCGC 1 cut(s) 201
Cfr10I RCCGGY 2 cut(s) 47, 89
Cfr13I GGNCC 3 cut(s) 45, 50, 101
Cfr42I CCGCGG 1 cut(s) 213
DdeI CTNAG 3 cut(s) 54, 68, 81
Eco81I CCTNAGG 3 cut(s) 54, 68, 81
Eco88I CYCGRG 1 cut(s) 96
EcoO109I RGGNCCY 1 cut(s) 101
FauI CCCGC 1 cut(s) 217
FauNDI CATATG 1 cut(s) 20
Fnu4HI GCNGC 5 cut(s) 61, 64, 74, 77, 197
FseI GGCCGGCC 1 cut(s) 51
Fsp4HI GCNGC 5 cut(s) 61, 64, 74, 77, 197
GlaI GCGC 1 cut(s) 200
GluI GCNGC 5 cut(s) 61, 64, 74, 77, 197
HaeIII GGCC 4 cut(s) 47, 51, 86, 103
HapII CCGG 3 cut(s) 48, 90, 107
HhaI GCGC 1 cut(s) 201
Hin6I GCGC 1 cut(s) 199
HinP1I GCGC 1 cut(s) 199
HpaII CCGG 3 cut(s) 48, 90, 107
Hpy188III TCNNGA 1 cut(s) 107
HpyF10VI GCNNNNNNNGC 2 cut(s) 48, 57
HpyF3I CTNAG 3 cut(s) 54, 68, 81
HspAI GCGC 1 cut(s) 199
Kpn2I TCCGGA 1 cut(s) 106
KroI GCCGGC 1 cut(s) 47
KroNI GCCGGC 1 cut(s) 49
KspI CCGCGG 1 cut(s) 213
LmnI GCTCC 1 cut(s) 211
LpnPI CCDG 6 cut(s) 28, 61, 66, 68, 103, 120
Lsp1109I GCAGC 2 cut(s) 47, 85
MaeIII GTNAC 1 cut(s) 5
MluCI AATT 1 cut(s) 110
MnlI CCTC 5 cut(s) 18, 24, 49, 90, 114
MroI TCCGGA 1 cut(s) 106
MroNI GCCGGC 1 cut(s) 47
MspA1I CMGCKG 1 cut(s) 212
MspI CCGG 3 cut(s) 48, 90, 107
MvnI CGCG 3 cut(s) 199, 201, 212
MwoI GCNNNNNNNGC 2 cut(s) 48, 57
NaeI GCCGGC 1 cut(s) 49
NdeI CATATG 1 cut(s) 20
NgoMIV GCCGGC 1 cut(s) 47
NlaIV GGNNCC 1 cut(s) 102
PdiI GCCGGC 1 cut(s) 49
PkrI GCNGC 5 cut(s) 62, 65, 75, 78, 198
PspN4I GGNNCC 1 cut(s) 102
PspPI GGNCC 3 cut(s) 45, 50, 101
RigI GGCCGGCC 1 cut(s) 51
SacII CCGCGG 1 cut(s) 213
SatI GCNGC 5 cut(s) 61, 64, 74, 77, 197
Sau96I GGNCC 3 cut(s) 45, 50, 101
SetI ASST 1 cut(s) 135
Sfr303I CCGCGG 1 cut(s) 213
SgrBI CCGCGG 1 cut(s) 213
Sse9I AATT 1 cut(s) 110
SsiI CCGC 5 cut(s) 64, 77, 197, 210, 212
TasI AATT 1 cut(s) 110
TauI GCSGC 3 cut(s) 66, 79, 199
TseI GCWGC 2 cut(s) 60, 73
XapI RAATTY 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.