Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000885

Physical Location & Seq

Genomic Coordinates Reverse (-)

60345423 .. 60353488

Gene Structure 8066 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00042270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGAAGGGAAAGGCTAAGAAGGTTGGAGATCGAGGAGAAGAAGGGTCGAAGGCGATTCCAGCTGAAGTTCTTGGCATGGGGTCTTGGATAACAAGGAGCGCAAAGGGCTTTCCATATTTATACGGAGTCTTGGAAAATATTAAGCTATTAGCCACCACCCAAAAGATTCAGAGTCAACGAACCCTCAACCAAGAAGAGGAAACTGCAGTGGTGTCCACCGTTATATCTAGATCTGAGGGTGACTGTATAAATTTTTTACTCGGAGCGCAGTTTGATCTCAAGGCCGGCCCCGAGGGTTGCCTAGTGAGGCAGCTGCCTCAGGCCACCGGTCACCGGAGGCCTCCGCCTCAGTGCCTCTACGTCTCGGGACCGGCCCCGAATAAGGTTAACAAGTTTTGGAATACCAAATCGAGGAGGGCTTTGTTTCGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

143

Amino Acids

15.73

Weight (kDa)

9.86

Isoelectric Point (pI)

54.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000885)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g26890 FvH4_2g26890 FvH4_2g26890 FvH4_3g20951 FvH4_3g20960 FvH4_3g20962
malus_domestica	MD03G1083300.v1.1 MD03G1083600.v1.1 MD08G1022000.v1.1 MD10G1261100.v1.1
prunus_persica	Prupe.1G183900_v2.0.a1 Prupe.1G184000_v2.0.a1
pyrus_communis	pycom03g06620 pycom05g26220 pycom10g21740
rosa_chinensis	RchiOBHm_Chr3g0475491 RchiOBHm_Chr5g0034591 RchiOBHm_Chr5g0035231 RchiOBHm_Chr5g0035371 RchiOBHm_Chr5g0035701 RchiOBHm_Chr5g0035711
rosa_laevigata	RLG00000005586 RLG00000022983 RLG00000033611 RLG00000033626 RLG00000033630 RLG00000033640 RLG00000033646 RLG00000033651 RLG00000033652
rosa_multiflora	Rmu_co8204696.1_g000001 Rmu_co8330583.1_g000001 Rmu_sc0001493.1_g000069 Rmu_sc0001493.1_g000077 Rmu_sc0001493.1_g000082 Rmu_sc0002460.1_g000096 Rmu_sc0002482.1_g000010 Rmu_sc0002482.1_g000012 Rmu_sc0002935.1_g000002 Rmu_sc0017377.1_g000001 Rmu_sc0026350.1_g000001 Rmu_sc0041591.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042270 Rroxscaffold_1G00044790 Rroxscaffold_1G00044920 Rroxscaffold_1G00045020 Rroxscaffold_1G00045140 Rroxscaffold_1G00045740
rosa_rugosa	Rorug05G0146700 Rorug05G0146800 Rorug05G0150900 Rorug05G0151900
rosa_samantha	Rh5CG274900 Rh5CG276400 Rh5DG247800 Rh5DG266600 Rh5DG465900
rosa_wichuraiana	Rw0G005840 Rw5G021800 Rw5G021890 Rw5G022260 Rw5G022350 Rw5G022510 Rw5G022560 Rw5G023950 Rw5G023960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	344
AcsI	RAATTY	1 cut(s)	250
AcuI	CTGAAG	1 cut(s)	84
AfiI	CCNNNNNNNGG	4 cut(s)	196, 333, 382, 411
AgeI	ACCGGT	1 cut(s)	326
AluBI	AGCT	3 cut(s)	62, 145, 313
AluI	AGCT	3 cut(s)	62, 145, 313
Alw26I	GTCTC	1 cut(s)	367
Ama87I	CYCGRG	2 cut(s)	290, 364
AoxI	GGCC	5 cut(s)	282, 286, 321, 338, 372
ApeKI	GCWGC	2 cut(s)	310, 313
ApoI	RAATTY	1 cut(s)	250
AsiGI	ACCGGT	1 cut(s)	326
AspLEI	GCGC	2 cut(s)	101, 268
AspS9I	GGNCC	3 cut(s)	287, 368, 373
AsuHPI	GGTGA	2 cut(s)	251, 323
AvaI	CYCGRG	2 cut(s)	290, 364
AvaII	GGWCC	1 cut(s)	368
AxyI	CCTNAGG	1 cut(s)	318
BbvI	GCAGC	2 cut(s)	300, 322
BcoDI	GTCTC	1 cut(s)	367
BfaI	CTAG	2 cut(s)	228, 302
BfmI	CTRYAG	1 cut(s)	204
BglII	AGATCT	1 cut(s)	230
BisI	GCNGC	2 cut(s)	311, 314
BlsI	GCNGC	2 cut(s)	312, 315
Bme18I	GGWCC	1 cut(s)	368
BmeT110I	CYCGRG	2 cut(s)	290, 364
BmgT120I	GGNCC	3 cut(s)	287, 368, 373
BmiI	GGNNCC	3 cut(s)	289, 369, 375
BpuEI	CTTGAG	1 cut(s)	263
BsaJI	CCNNGG	1 cut(s)	291
BsaWI	WCCGGW	2 cut(s)	326, 333
Bsc4I	CCNNNNNNNGG	4 cut(s)	196, 333, 382, 411
Bse118I	RCCGGY	3 cut(s)	284, 326, 370
Bse21I	CCTNAGG	1 cut(s)	318
BseDI	CCNNGG	1 cut(s)	291
BseLI	CCNNNNNNNGG	4 cut(s)	196, 333, 382, 411
BseMII	CTCAG	3 cut(s)	225, 332, 362
BseRI	GAGGAG	2 cut(s)	48, 427
BseXI	GCAGC	2 cut(s)	300, 322
BshFI	GGCC	5 cut(s)	284, 288, 323, 340, 374
BshTI	ACCGGT	1 cut(s)	326
BsiHKCI	CYCGRG	2 cut(s)	290, 364
BsiSI	CCGG	4 cut(s)	285, 327, 334, 371
BslFI	GGGAC	1 cut(s)	381
BslI	CCNNNNNNNGG	4 cut(s)	196, 333, 382, 411
BsmAI	GTCTC	1 cut(s)	367
BsmBI	CGTCTC	1 cut(s)	367
BsmFI	GGGAC	1 cut(s)	381
BsnI	GGCC	5 cut(s)	284, 288, 323, 340, 374
BsoBI	CYCGRG	2 cut(s)	290, 364
Bsp143I	GATC	3 cut(s)	28, 230, 274
BspACI	CCGC	1 cut(s)	344
BspANI	GGCC	5 cut(s)	284, 288, 323, 340, 374
BspCNI	CTCAG	3 cut(s)	226, 331, 361
BspLI	GGNNCC	3 cut(s)	289, 369, 375
BspMAI	CTGCAG	1 cut(s)	208
BsrFI	RCCGGY	3 cut(s)	284, 326, 370
BssAI	RCCGGY	3 cut(s)	284, 326, 370
BssECI	CCNNGG	1 cut(s)	291
BssMI	GATC	3 cut(s)	28, 230, 274
Bst4CI	ACNGT	2 cut(s)	220, 245
Bst6I	CTCTTC	1 cut(s)	189
BstC8I	GCNNGC	1 cut(s)	286
BstDEI	CTNAG	4 cut(s)	15, 234, 318, 348
BstEII	GGTNACC	1 cut(s)	329
BstHHI	GCGC	2 cut(s)	101, 268
BstKTI	GATC	3 cut(s)	31, 233, 277
BstMAI	GTCTC	1 cut(s)	367
BstMBI	GATC	3 cut(s)	28, 230, 274
BstMWI	GCNNNNNNNGC	2 cut(s)	59, 105
BstPI	GGTNACC	1 cut(s)	329
BstSFI	CTRYAG	1 cut(s)	204
BstV1I	GCAGC	2 cut(s)	300, 322
BstX2I	RGATCY	1 cut(s)	230
BstYI	RGATCY	1 cut(s)	230
Bsu36I	CCTNAGG	1 cut(s)	318
BsuRI	GGCC	5 cut(s)	284, 288, 323, 340, 374
BtsI	GCAGTG	1 cut(s)	213
BtsIMutI	CAGTG	2 cut(s)	213, 356
Cac8I	GCNNGC	1 cut(s)	286
CfoI	GCGC	2 cut(s)	101, 268
Cfr10I	RCCGGY	3 cut(s)	284, 326, 370
Cfr13I	GGNCC	3 cut(s)	287, 368, 373
CspAI	ACCGGT	1 cut(s)	326
CviAII	CATG	1 cut(s)	76
DdeI	CTNAG	4 cut(s)	15, 234, 318, 348
DpnI	GATC	3 cut(s)	30, 232, 276
DpnII	GATC	3 cut(s)	28, 230, 274
Eam1104I	CTCTTC	1 cut(s)	189
EarI	CTCTTC	1 cut(s)	189
EciI	GGCGGA	1 cut(s)	333
Eco147I	AGGCCT	1 cut(s)	340
Eco47I	GGWCC	1 cut(s)	368
Eco57I	CTGAAG	1 cut(s)	84
Eco81I	CCTNAGG	1 cut(s)	318
Eco88I	CYCGRG	2 cut(s)	290, 364
Eco91I	GGTNACC	1 cut(s)	329
EcoO65I	GGTNACC	1 cut(s)	329
Esp3I	CGTCTC	1 cut(s)	367
FaeI	CATG	1 cut(s)	79
FaiI	YATR	5 cut(s)	77, 115, 121, 224, 248
FaqI	GGGAC	1 cut(s)	381
FatI	CATG	1 cut(s)	75
Fnu4HI	GCNGC	2 cut(s)	311, 314
FseI	GGCCGGCC	1 cut(s)	288
Fsp4HI	GCNGC	2 cut(s)	311, 314
FspBI	CTAG	2 cut(s)	228, 302
GlaI	GCGC	2 cut(s)	100, 267
GluI	GCNGC	2 cut(s)	311, 314
HaeIII	GGCC	5 cut(s)	284, 288, 323, 340, 374
HapII	CCGG	4 cut(s)	285, 327, 334, 371
HhaI	GCGC	2 cut(s)	101, 268
Hin1II	CATG	1 cut(s)	79
Hin6I	GCGC	2 cut(s)	99, 266
HinP1I	GCGC	2 cut(s)	99, 266
HincII	GTYRAC	2 cut(s)	176, 388
HindII	GTYRAC	2 cut(s)	176, 388
HinfI	GANTC	4 cut(s)	55, 126, 166, 172
HpaI	GTTAAC	1 cut(s)	388
HpaII	CCGG	4 cut(s)	285, 327, 334, 371
HphI	GGTGA	2 cut(s)	251, 323
Hpy166II	GTNNAC	3 cut(s)	176, 216, 388
Hpy188I	TCNGA	3 cut(s)	171, 235, 263
Hpy188III	TCNNGA	2 cut(s)	228, 366
Hpy8I	GTNNAC	3 cut(s)	176, 216, 388
HpyAV	CCTTC	3 cut(s)	13, 35, 43
HpyCH4III	ACNGT	2 cut(s)	220, 245
HpyCH4IV	ACGT	1 cut(s)	360
HpyCH4V	TGCA	1 cut(s)	206
HpyF10VI	GCNNNNNNNGC	2 cut(s)	59, 105
HpyF3I	CTNAG	4 cut(s)	15, 234, 318, 348
HpySE526I	ACGT	1 cut(s)	360
Hsp92II	CATG	1 cut(s)	79
HspAI	GCGC	2 cut(s)	99, 266
KroI	GCCGGC	1 cut(s)	284
KroNI	GCCGGC	1 cut(s)	286
KspAI	GTTAAC	1 cut(s)	388
Kzo9I	GATC	3 cut(s)	28, 230, 274
LmnI	GCTCC	2 cut(s)	96, 263
LpnPI	CCDG	6 cut(s)	72, 298, 305, 340, 347, 384
Lsp1109I	GCAGC	2 cut(s)	300, 322
MaeI	CTAG	2 cut(s)	228, 302
MaeII	ACGT	1 cut(s)	360
MaeIII	GTNAC	2 cut(s)	239, 329
MalI	GATC	3 cut(s)	30, 232, 276
MboI	GATC	3 cut(s)	28, 230, 274
MboII	GAAGA	2 cut(s)	50, 206
MflI	RGATCY	1 cut(s)	230
MluCI	AATT	1 cut(s)	250
MlyI	GAGTC	2 cut(s)	135, 181
MmeI	TCCRAC	1 cut(s)	4
MroNI	GCCGGC	1 cut(s)	284
MseI	TTAA	2 cut(s)	141, 387
MspA1I	CMGCKG	2 cut(s)	62, 313
MspI	CCGG	4 cut(s)	285, 327, 334, 371
MwoI	GCNNNNNNNGC	2 cut(s)	59, 105
NaeI	GCCGGC	1 cut(s)	286
NdeII	GATC	3 cut(s)	28, 230, 274
NgoMIV	GCCGGC	1 cut(s)	284
NlaIII	CATG	1 cut(s)	79
NlaIV	GGNNCC	3 cut(s)	289, 369, 375
NmuCI	GTSAC	2 cut(s)	239, 329
PceI	AGGCCT	1 cut(s)	340
PdiI	GCCGGC	1 cut(s)	286
PfeI	GAWTC	2 cut(s)	55, 166
PinAI	ACCGGT	1 cut(s)	326
PkrI	GCNGC	2 cut(s)	312, 315
PleI	GAGTC	2 cut(s)	134, 180
PpsI	GAGTC	2 cut(s)	134, 180
PspEI	GGTNACC	1 cut(s)	329
PspN4I	GGNNCC	3 cut(s)	289, 369, 375
PspPI	GGNCC	3 cut(s)	287, 368, 373
PstI	CTGCAG	1 cut(s)	208
PsuI	RGATCY	1 cut(s)	230
PvuII	CAGCTG	2 cut(s)	62, 313
RigI	GGCCGGCC	1 cut(s)	288
SaqAI	TTAA	2 cut(s)	141, 387
SatI	GCNGC	2 cut(s)	311, 314
Sau3AI	GATC	3 cut(s)	28, 230, 274
Sau96I	GGNCC	3 cut(s)	287, 368, 373
SchI	GAGTC	2 cut(s)	135, 181
SetI	ASST	6 cut(s)	24, 64, 147, 315, 363, 387
SfcI	CTRYAG	1 cut(s)	204
SinI	GGWCC	1 cut(s)	368
SmlI	CTYRAG	1 cut(s)	278
SmoI	CTYRAG	1 cut(s)	278
Sse9I	AATT	1 cut(s)	250
SseBI	AGGCCT	1 cut(s)	340
SsiI	CCGC	1 cut(s)	344
SspI	AATATT	1 cut(s)	139
SspMI	CTAG	2 cut(s)	228, 302
StuI	AGGCCT	1 cut(s)	340
TaaI	ACNGT	2 cut(s)	220, 245
TaiI	ACGT	1 cut(s)	363
TaqI	TCGA	3 cut(s)	31, 47, 410
TasI	AATT	1 cut(s)	250
TfiI	GAWTC	2 cut(s)	55, 166
Tru1I	TTAA	2 cut(s)	141, 387
Tru9I	TTAA	2 cut(s)	141, 387
TscAI	CASTG	2 cut(s)	213, 356
TseFI	GTSAC	2 cut(s)	239, 329
TseI	GCWGC	2 cut(s)	310, 313
Tsp45I	GTSAC	2 cut(s)	239, 329
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	138
TspRI	CASTG	2 cut(s)	213, 356
VpaK11BI	GGWCC	1 cut(s)	368
XapI	RAATTY	1 cut(s)	250
XbaI	TCTAGA	1 cut(s)	227
XspI	CTAG	2 cut(s)	228, 302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.