Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0000885

Physical Location & Seq

Genomic Coordinates Reverse (-)

16235865 .. 16236938

Gene Structure 1074 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022983

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGAGTGCGAGTGCAGAGAAATTTGATTACGATGTCTACCTCGATAGTCCTCCAGCTTCTCGGCGTGGTGACATTAGAACGCAGAGACTTGGAGCGTGGCGTGGTCACATTAAACAGCAGACATTTTTTAGGTTGTTGAAGAGTCTAACCACGAAGTTGGAAGAAAATGGAATACGTACTTTCACGGACGATGCCCCTCTACATCCAGCAGTACGTGACGGTATAGTTGAAAGATCGAGGATTGCAATCCCTGTGCTAGGAGAGGATTACGTATCATCTGAGCATTGCTTAGATGGGCTTGACAAGATTGTTAGACGCCCAGATGATGAAAAAAGAGTGGTACTGCCGATTTTCTATGACGTGGATCCAGCAGAAGTACGCCACCAAACGGGGAGTTTCGCAAAAGCCTTTGAGAAACACGTTAAAAATTTTCCAAGGAAAGTACAAAGGTGGAGAGATGCTCTTAGGGAAGTGGCCAACATTTCTGGGTTTCATTCAAAGGGCCGGTACGAAGCAGATCTCGTTGATGAAATTGTTCGAGACGTACGGGCGAAATTGCAGCAGAACTATAAATTTCCATTTCCCTCATTTTCGTCTTGTTTAGGTCGTCCAAAGAATAAGTATGAGGTCTTTTTAAGTTTCAGAGGAGAAGATACTCGTTATAAATTTGTGGATCATCTACGTGCTGGATTAGTAAGGAAAGGGATTTCCACATTTAGAGATGACAAAAATCTTGAGACGGGAGAACACATTGCCTCACAACTAGAAAAAGCCATTGAGAGATCACAGATTTGCATTGTCGTTCTTTCACCAAACTATGCTTCTTCAACATGGTGCTTGGATGAGCTTCTGAAGATTCTTCATTGCAGAAAATTATCCAACTTTTGCAACCAAGAAAATTGGAATTTCGAAGGCATTTGCGGAACCCTGTTGTTAATGCTCAACTTCTCCTCATCCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_3 LRR_8 NB-ARC TIR

Protein Analysis

321

Amino Acids

36.93

Weight (kDa)

8.86

Isoelectric Point (pI)

45.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	39 - 188	1.3e-31	TIR domain
TIR_2	PF13676	47 - 124	5.9e-06	TIR domain
TIR	PF01582	207 - 292	7.8e-31	TIR domain
TIR_2	PF13676	210 - 288	2.8e-16	TIR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000885)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g26890 FvH4_2g26890 FvH4_2g26890 FvH4_3g20951 FvH4_3g20960 FvH4_3g20962
malus_domestica	MD03G1083300.v1.1 MD03G1083600.v1.1 MD08G1022000.v1.1 MD10G1261100.v1.1
prunus_persica	Prupe.1G183900_v2.0.a1 Prupe.1G184000_v2.0.a1
pyrus_communis	pycom03g06620 pycom05g26220 pycom10g21740
rosa_chinensis	RchiOBHm_Chr3g0475491 RchiOBHm_Chr5g0034591 RchiOBHm_Chr5g0035231 RchiOBHm_Chr5g0035371 RchiOBHm_Chr5g0035701 RchiOBHm_Chr5g0035711
rosa_laevigata	RLG00000005586 RLG00000022983 RLG00000033611 RLG00000033626 RLG00000033630 RLG00000033640 RLG00000033646 RLG00000033651 RLG00000033652
rosa_multiflora	Rmu_co8204696.1_g000001 Rmu_co8330583.1_g000001 Rmu_sc0001493.1_g000069 Rmu_sc0001493.1_g000077 Rmu_sc0001493.1_g000082 Rmu_sc0002460.1_g000096 Rmu_sc0002482.1_g000010 Rmu_sc0002482.1_g000012 Rmu_sc0002935.1_g000002 Rmu_sc0017377.1_g000001 Rmu_sc0026350.1_g000001 Rmu_sc0041591.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042270 Rroxscaffold_1G00044790 Rroxscaffold_1G00044920 Rroxscaffold_1G00045020 Rroxscaffold_1G00045140 Rroxscaffold_1G00045740
rosa_rugosa	Rorug05G0146700 Rorug05G0146800 Rorug05G0150900 Rorug05G0151900
rosa_samantha	Rh5CG274900 Rh5CG276400 Rh5DG247800 Rh5DG266600 Rh5DG465900
rosa_wichuraiana	Rw0G005840 Rw5G021800 Rw5G021890 Rw5G022260 Rw5G022350 Rw5G022510 Rw5G022560 Rw5G023950 Rw5G023960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	663
AccI	GTMKAC	1 cut(s)	36
AciI	CCGC	1 cut(s)	921
AclWI	GGATC	3 cut(s)	359, 372, 681
AcoI	YGGCCR	1 cut(s)	474
AcsI	RAATTY	5 cut(s)	20, 427, 572, 665, 904
AcuI	CTGAAG	1 cut(s)	872
AcyI	GRCGYC	1 cut(s)	316
AfaI	GTAC	7 cut(s)	178, 213, 342, 378, 444, 509, 546
AfiI	CCNNNNNNNGG	2 cut(s)	257, 388
AflIII	ACRYGT	1 cut(s)	418
AgsI	TTSAA	4 cut(s)	139, 230, 498, 828
AjiI	CACGTC	1 cut(s)	361
AjuI	GAANNNNNNNTTGG	2 cut(s)	805, 837
AluBI	AGCT	2 cut(s)	56, 847
AluI	AGCT	2 cut(s)	56, 847
Alw26I	GTCTC	3 cut(s)	79, 534, 731
AlwI	GGATC	3 cut(s)	359, 372, 681
AoxI	GGCC	2 cut(s)	474, 502
ApeKI	GCWGC	1 cut(s)	559
ApoI	RAATTY	5 cut(s)	20, 427, 572, 665, 904
Asp700I	GAANNNNTTC	1 cut(s)	534
AspS9I	GGNCC	1 cut(s)	502
AsuHPI	GGTGA	2 cut(s)	80, 801
AsuII	TTCGAA	1 cut(s)	909
BalI	TGGCCA	1 cut(s)	476
BamHI	GGATCC	1 cut(s)	364
BbvI	GCAGC	1 cut(s)	571
BccI	CCATC	1 cut(s)	287
BcoDI	GTCTC	3 cut(s)	79, 534, 731
BfaI	CTAG	2 cut(s)	257, 764
BglII	AGATCT	1 cut(s)	517
BisI	GCNGC	1 cut(s)	560
BlsI	GCNGC	1 cut(s)	561
BmgBI	CACGTC	1 cut(s)	361
BmgT120I	GGNCC	1 cut(s)	502
BmiI	GGNNCC	2 cut(s)	366, 925
BmsI	GCATC	2 cut(s)	181, 448
BplI	GAGNNNNNCTC	2 cut(s)	445, 477
BpmI	CTGGAG	1 cut(s)	36
Bpu14I	TTCGAA	1 cut(s)	909
BpuEI	CTTGAG	1 cut(s)	755
BsaAI	YACGTR	4 cut(s)	176, 215, 271, 683
BsaBI	GATNNNNATC	1 cut(s)	245
BsaHI	GRCGYC	1 cut(s)	316
BsaJI	CCNNGG	1 cut(s)	434
Bsc4I	CCNNNNNNNGG	2 cut(s)	257, 388
Bse118I	RCCGGY	1 cut(s)	504
Bse3DI	GCAATG	3 cut(s)	283, 750, 862
Bse8I	GATNNNNATC	1 cut(s)	245
BseDI	CCNNGG	1 cut(s)	434
BseGI	GGATG	3 cut(s)	202, 847, 953
BseJI	GATNNNNATC	1 cut(s)	245
BseLI	CCNNNNNNNGG	2 cut(s)	257, 388
BseMI	GCAATG	3 cut(s)	283, 750, 862
BseMII	CTCAG	1 cut(s)	270
BseRI	GAGGAG	2 cut(s)	660, 940
BseXI	GCAGC	1 cut(s)	571
BsgI	GTGCAG	1 cut(s)	33
BshFI	GGCC	2 cut(s)	476, 504
BsiSI	CCGG	1 cut(s)	505
BsiWI	CGTACG	1 cut(s)	544
BslI	CCNNNNNNNGG	2 cut(s)	257, 388
BsmAI	GTCTC	3 cut(s)	79, 534, 731
BsmBI	CGTCTC	2 cut(s)	534, 731
BsnI	GGCC	2 cut(s)	476, 504
Bsp119I	TTCGAA	1 cut(s)	909
Bsp143I	GATC	5 cut(s)	233, 364, 517, 673, 782
BspACI	CCGC	1 cut(s)	921
BspANI	GGCC	2 cut(s)	476, 504
BspCNI	CTCAG	1 cut(s)	271
BspLI	GGNNCC	2 cut(s)	366, 925
BspPI	GGATC	3 cut(s)	359, 372, 681
BspT104I	TTCGAA	1 cut(s)	909
BsrDI	GCAATG	3 cut(s)	283, 750, 862
BsrFI	RCCGGY	1 cut(s)	504
BssAI	RCCGGY	1 cut(s)	504
BssECI	CCNNGG	1 cut(s)	434
BssMI	GATC	5 cut(s)	233, 364, 517, 673, 782
BssNI	GRCGYC	1 cut(s)	316
BssT1I	CCWWGG	1 cut(s)	434
Bst4CI	ACNGT	1 cut(s)	221
Bst6I	CTCTTC	1 cut(s)	134
BstACI	GRCGYC	1 cut(s)	316
BstBAI	YACGTR	4 cut(s)	176, 215, 271, 683
BstBI	TTCGAA	1 cut(s)	909
BstDEI	CTNAG	3 cut(s)	279, 289, 464
BstENI	CCTNNNNNAGG	1 cut(s)	255
BstF5I	GGATG	3 cut(s)	202, 847, 953
BstKTI	GATC	5 cut(s)	236, 367, 520, 676, 785
BstMAI	GTCTC	3 cut(s)	79, 534, 731
BstMBI	GATC	5 cut(s)	233, 364, 517, 673, 782
BstSNI	TACGTA	2 cut(s)	176, 271
BstV1I	GCAGC	1 cut(s)	571
BstX2I	RGATCY	2 cut(s)	364, 517
BstXI	CCANNNNNNTGG	1 cut(s)	157
BstYI	RGATCY	2 cut(s)	364, 517
BsuRI	GGCC	2 cut(s)	476, 504
BtrI	CACGTC	1 cut(s)	361
BtsCI	GGATG	3 cut(s)	202, 847, 953
Cfr10I	RCCGGY	1 cut(s)	504
Cfr13I	GGNCC	1 cut(s)	502
CseI	GACGC	1 cut(s)	324
Csp6I	GTAC	7 cut(s)	177, 212, 341, 377, 443, 508, 545
CviAII	CATG	1 cut(s)	831
CviJI	RGCY	7 cut(s)	56, 298, 407, 476, 504, 773, 847
CviKI_1	RGCY	7 cut(s)	56, 298, 407, 476, 504, 773, 847
CviQI	GTAC	7 cut(s)	177, 212, 341, 377, 443, 508, 545
DdeI	CTNAG	3 cut(s)	279, 289, 464
DpnI	GATC	5 cut(s)	235, 366, 519, 675, 784
DpnII	GATC	5 cut(s)	233, 364, 517, 673, 782
EaeI	YGGCCR	1 cut(s)	474
Eam1104I	CTCTTC	1 cut(s)	134
EarI	CTCTTC	1 cut(s)	134
Eco105I	TACGTA	2 cut(s)	176, 271
Eco130I	CCWWGG	1 cut(s)	434
Eco57I	CTGAAG	1 cut(s)	872
EcoNI	CCTNNNNNAGG	1 cut(s)	255
EcoT14I	CCWWGG	1 cut(s)	434
ErhI	CCWWGG	1 cut(s)	434
Esp3I	CGTCTC	2 cut(s)	534, 731
FaeI	CATG	1 cut(s)	834
FaiI	YATR	7 cut(s)	224, 357, 570, 624, 663, 819, 832
FatI	CATG	1 cut(s)	830
FblI	GTMKAC	1 cut(s)	36
Fnu4HI	GCNGC	1 cut(s)	560
FokI	GGATG	3 cut(s)	189, 854, 940
Fsp4HI	GCNGC	1 cut(s)	560
FspBI	CTAG	2 cut(s)	257, 764
GluI	GCNGC	1 cut(s)	560
GsuI	CTGGAG	1 cut(s)	36
HaeIII	GGCC	2 cut(s)	476, 504
HapII	CCGG	1 cut(s)	505
HgaI	GACGC	1 cut(s)	324
Hin1I	GRCGYC	1 cut(s)	316
Hin1II	CATG	1 cut(s)	834
HinfI	GANTC	2 cut(s)	142, 856
HpaII	CCGG	1 cut(s)	505
HphI	GGTGA	2 cut(s)	80, 801
Hpy166II	GTNNAC	1 cut(s)	37
Hpy188I	TCNGA	3 cut(s)	280, 644, 852
Hpy188III	TCNNGA	2 cut(s)	539, 734
Hpy8I	GTNNAC	1 cut(s)	37
HpyAV	CCTTC	1 cut(s)	905
HpyCH4III	ACNGT	1 cut(s)	221
HpyCH4IV	ACGT	7 cut(s)	175, 214, 270, 360, 420, 543, 682
HpyCH4V	TGCA	6 cut(s)	14, 245, 559, 795, 867, 888
HpyF3I	CTNAG	3 cut(s)	279, 289, 464
HpySE526I	ACGT	7 cut(s)	175, 214, 270, 360, 420, 543, 682
Hsp92I	GRCGYC	1 cut(s)	316
Hsp92II	CATG	1 cut(s)	834
Kzo9I	GATC	5 cut(s)	233, 364, 517, 673, 782
LmnI	GCTCC	1 cut(s)	92
LpnPI	CCDG	9 cut(s)	66, 219, 264, 333, 381, 471, 518, 672, 941
Lsp1109I	GCAGC	1 cut(s)	571
LweI	GCATC	2 cut(s)	181, 448
MaeI	CTAG	2 cut(s)	257, 764
MaeII	ACGT	7 cut(s)	175, 214, 270, 360, 420, 543, 682
MaeIII	GTNAC	3 cut(s)	68, 104, 215
MalI	GATC	5 cut(s)	235, 366, 519, 675, 784
MboI	GATC	5 cut(s)	233, 364, 517, 673, 782
MboII	GAAGA	6 cut(s)	151, 173, 662, 816, 851, 865
MflI	RGATCY	2 cut(s)	364, 517
MlsI	TGGCCA	1 cut(s)	476
MluCI	AATT	9 cut(s)	20, 427, 531, 554, 572, 665, 872, 898, 904
MluNI	TGGCCA	1 cut(s)	476
MlyI	GAGTC	1 cut(s)	151
MmeI	TCCRAC	2 cut(s)	138, 903
Mox20I	TGGCCA	1 cut(s)	476
MroXI	GAANNNNTTC	1 cut(s)	534
MscI	TGGCCA	1 cut(s)	476
MseI	TTAA	5 cut(s)	111, 423, 635, 935, 961
MslI	CAYNNNNRTG	1 cut(s)	681
Msp20I	TGGCCA	1 cut(s)	476
MspI	CCGG	1 cut(s)	505
NdeII	GATC	5 cut(s)	233, 364, 517, 673, 782
NlaIII	CATG	1 cut(s)	834
NlaIV	GGNNCC	2 cut(s)	366, 925
NmeAIII	GCCGAG	1 cut(s)	40
NmuCI	GTSAC	3 cut(s)	68, 104, 215
NspV	TTCGAA	1 cut(s)	909
PdmI	GAANNNNTTC	1 cut(s)	534
PfeI	GAWTC	1 cut(s)	856
Pfl23II	CGTACG	1 cut(s)	544
PkrI	GCNGC	1 cut(s)	561
PleI	GAGTC	1 cut(s)	150
PpsI	GAGTC	1 cut(s)	150
Ppu21I	YACGTR	4 cut(s)	176, 215, 271, 683
PsiI	TTATAA	1 cut(s)	663
PspLI	CGTACG	1 cut(s)	544
PspN4I	GGNNCC	2 cut(s)	366, 925
PspPI	GGNCC	1 cut(s)	502
PsuI	RGATCY	2 cut(s)	364, 517
RsaI	GTAC	7 cut(s)	178, 213, 342, 378, 444, 509, 546
RsaNI	GTAC	7 cut(s)	177, 212, 341, 377, 443, 508, 545
RseI	CAYNNNNRTG	1 cut(s)	681
SaqAI	TTAA	5 cut(s)	111, 423, 635, 935, 961
SatI	GCNGC	1 cut(s)	560
Sau3AI	GATC	5 cut(s)	233, 364, 517, 673, 782
Sau96I	GGNCC	1 cut(s)	502
SchI	GAGTC	1 cut(s)	151
SfaNI	GCATC	2 cut(s)	181, 448
SfuI	TTCGAA	1 cut(s)	909
SmiMI	CAYNNNNRTG	1 cut(s)	681
SmlI	CTYRAG	1 cut(s)	734
SmoI	CTYRAG	1 cut(s)	734
SnaBI	TACGTA	2 cut(s)	176, 271
Sse9I	AATT	9 cut(s)	20, 427, 531, 554, 572, 665, 872, 898, 904
SsiI	CCGC	1 cut(s)	921
SspMI	CTAG	2 cut(s)	257, 764
StyI	CCWWGG	1 cut(s)	434
TaaI	ACNGT	1 cut(s)	221
TaiI	ACGT	7 cut(s)	178, 217, 273, 363, 423, 546, 685
TaqI	TCGA	4 cut(s)	42, 236, 538, 909
TasI	AATT	9 cut(s)	20, 427, 531, 554, 572, 665, 872, 898, 904
TatI	WGTACW	1 cut(s)	442
TfiI	GAWTC	1 cut(s)	856
Tru1I	TTAA	5 cut(s)	111, 423, 635, 935, 961
Tru9I	TTAA	5 cut(s)	111, 423, 635, 935, 961
TseFI	GTSAC	3 cut(s)	68, 104, 215
TseI	GCWGC	1 cut(s)	559
Tsp45I	GTSAC	3 cut(s)	68, 104, 215
TspDTI	ATGAA	4 cut(s)	342, 482, 543, 851
TspGWI	ACGGA	1 cut(s)	200
XagI	CCTNNNNNAGG	1 cut(s)	255
XapI	RAATTY	5 cut(s)	20, 427, 572, 665, 904
XmiI	GTMKAC	1 cut(s)	36
XmnI	GAANNNNTTC	1 cut(s)	534
XspI	CTAG	2 cut(s)	257, 764

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.