Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00232

Orthogroup ID

OG0000885

Physical Location & Seq

Genomic Coordinates Forward (+)

17554 .. 20807

Gene Structure 3254 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G005840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGGGTGAGTTCAGACTTGGCGTTAACTATGGTGGAAAGTGGGTTGGTTCCTTTTACATAGGTGGTGAGACAGAAGAAATAATGGTTTCAGAAGACATTACTTATAACGAGCTTCTAGATCAACTGTATCATATTGTTGGAGTGCATCCAAATGAAAATGAGATCAAGATTAGTAAGATCGATGAATCAAAATCACCGGCTTATCCTGTGGAGATAATCAATGATGATGACCTCAAAAATTTTATTGATCAGAGCATTTCTTCCGATATGCACTCGAAGCATCCATTGCCAAATTCTTCTAGAAGAATTATTGAAGTTAGAGTTTTGGTTAACCATGATGGAGAGTGGGTGAATTCTACATATGTTTGGTGGCAAAACGAAAGGAATAATAATCTCAGAGGACATTACTTGATTATGAAGACTGCATATAAATCAAATCTACCTACTCAACCTGTGGAGATAATCGATGATGAAGGCCTTGCATTTTTCATCCATGATGAGAATCTTTCACCGGGTATGAGCTCCATATTTACTTTGTGCGCTACCCTTGAACGATGGGCATTTCCTAATGGAAGGATGGAGTCCTCACATAGTGGTACAACACATCTTAGAAGATTTGGGACCTATCCGAGTTGCGTTCATTGTGTGACACCTAGTCAGGTGCCTCATCTTCATACTCAAGTTGGACCATGCATCCAGCAACCTTTCTACCAGCAACAACAACATTCTTACCGACAGACGACGTTGCAGCCTTGCTACGAGCACTATCAACCATCCTTTCGGCAGCCACAGCCTCTGTACCAACAACTTCATCCTTCCTACGTGAAGCAGCAGCCTCAGTACCAAAAGCCGAAGCCATCCTACGTGCAGCTGCTGTCACCAATTCATCATGTGCCTTACTCGCTCAATATGTTCTGGAATGATGCAACCCGAATATTTCAAGATTTCAACTTTTGGCAATTTAGTTTCCATCATTTTATTAAGAAATATTTTCTATTTCTTACGGCTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_3 LRR_8 NB-ARC TIR

Protein Analysis

337

Amino Acids

39.52

Weight (kDa)

6.24

Isoelectric Point (pI)

53.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000885)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g26890 FvH4_2g26890 FvH4_2g26890 FvH4_3g20951 FvH4_3g20960 FvH4_3g20962
malus_domestica	MD03G1083300.v1.1 MD03G1083600.v1.1 MD08G1022000.v1.1 MD10G1261100.v1.1
prunus_persica	Prupe.1G183900_v2.0.a1 Prupe.1G184000_v2.0.a1
pyrus_communis	pycom03g06620 pycom05g26220 pycom10g21740
rosa_chinensis	RchiOBHm_Chr3g0475491 RchiOBHm_Chr5g0034591 RchiOBHm_Chr5g0035231 RchiOBHm_Chr5g0035371 RchiOBHm_Chr5g0035701 RchiOBHm_Chr5g0035711
rosa_laevigata	RLG00000005586 RLG00000022983 RLG00000033611 RLG00000033626 RLG00000033630 RLG00000033640 RLG00000033646 RLG00000033651 RLG00000033652
rosa_multiflora	Rmu_co8204696.1_g000001 Rmu_co8330583.1_g000001 Rmu_sc0001493.1_g000069 Rmu_sc0001493.1_g000077 Rmu_sc0001493.1_g000082 Rmu_sc0002460.1_g000096 Rmu_sc0002482.1_g000010 Rmu_sc0002482.1_g000012 Rmu_sc0002935.1_g000002 Rmu_sc0017377.1_g000001 Rmu_sc0026350.1_g000001 Rmu_sc0041591.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042270 Rroxscaffold_1G00044790 Rroxscaffold_1G00044920 Rroxscaffold_1G00045020 Rroxscaffold_1G00045140 Rroxscaffold_1G00045740
rosa_rugosa	Rorug05G0146700 Rorug05G0146800 Rorug05G0150900 Rorug05G0151900
rosa_samantha	Rh5CG274900 Rh5CG276400 Rh5DG247800 Rh5DG266600 Rh5DG465900
rosa_wichuraiana	Rw0G005840 Rw5G021800 Rw5G021890 Rw5G022260 Rw5G022350 Rw5G022510 Rw5G022560 Rw5G023950 Rw5G023960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	105
AccB1I	GGYRCC	1 cut(s)	661
AcsI	RAATTY	3 cut(s)	238, 292, 352
AdeI	CACNNNGTG	1 cut(s)	593
AfaI	GTAC	3 cut(s)	598, 800, 842
AgsI	TTSAA	4 cut(s)	314, 551, 941, 949
AhdI	GACNNNNNGTC	1 cut(s)	654
AluBI	AGCT	3 cut(s)	112, 522, 871
AluI	AGCT	3 cut(s)	112, 522, 871
Alw21I	GWGCWC	2 cut(s)	524, 765
Alw26I	GTCTC	1 cut(s)	62
AlwNI	CAGNNNCTG	2 cut(s)	796, 874
AoxI	GGCC	1 cut(s)	475
ApeKI	GCWGC	6 cut(s)	748, 784, 829, 832, 868, 871
ApoI	RAATTY	3 cut(s)	238, 292, 352
AspLEI	GCGC	1 cut(s)	542
AspS9I	GGNCC	2 cut(s)	621, 686
AsuC2I	CCSGG	1 cut(s)	513
AsuHPI	GGTGA	6 cut(s)	17, 77, 186, 361, 501, 870
AvaII	GGWCC	2 cut(s)	621, 686
BanI	GGYRCC	1 cut(s)	661
BanII	GRGCYC	1 cut(s)	524
BarI	GAAGNNNNNNTAC	2 cut(s)	845, 877
BbsI	GAAGAC	2 cut(s)	99, 425
Bbv12I	GWGCWC	2 cut(s)	524, 765
BbvI	GCAGC	6 cut(s)	760, 796, 841, 844, 858, 880
BccI	CCATC	6 cut(s)	332, 549, 571, 781, 865, 978
BclI	TGATCA	1 cut(s)	247
BcnI	CCSGG	1 cut(s)	513
BcoDI	GTCTC	1 cut(s)	62
BfaI	CTAG	3 cut(s)	116, 300, 654
BisI	GCNGC	6 cut(s)	749, 785, 830, 833, 869, 872
BlsI	GCNGC	6 cut(s)	750, 786, 831, 834, 870, 873
Bme1390I	CCNGG	1 cut(s)	513
Bme18I	GGWCC	2 cut(s)	621, 686
BmeRI	GACNNNNNGTC	1 cut(s)	654
BmgT120I	GGNCC	2 cut(s)	621, 686
BmiI	GGNNCC	3 cut(s)	49, 622, 663
BmrFI	CCNGG	1 cut(s)	513
BmsI	GCATC	4 cut(s)	154, 289, 702, 913
BpiI	GAAGAC	2 cut(s)	99, 425
BpuEI	CTTGAG	1 cut(s)	663
BpuMI	CCSGG	1 cut(s)	513
Bsa29I	ATCGAT	2 cut(s)	180, 465
BsaAI	YACGTR	2 cut(s)	823, 865
BsaBI	GATNNNNATC	1 cut(s)	501
BsaXI	ACNNNNNCTCC	2 cut(s)	333, 363
Bse118I	RCCGGY	1 cut(s)	196
Bse3DI	GCAATG	1 cut(s)	284
Bse8I	GATNNNNATC	1 cut(s)	501
BseCI	ATCGAT	2 cut(s)	180, 465
BseGI	GGATG	8 cut(s)	145, 280, 489, 582, 693, 773, 811, 857
BseJI	GATNNNNATC	1 cut(s)	501
BseMI	GCAATG	1 cut(s)	284
BseMII	CTCAG	2 cut(s)	409, 851
BseXI	GCAGC	6 cut(s)	760, 796, 841, 844, 858, 880
BsgI	GTGCAG	1 cut(s)	887
BshFI	GGCC	1 cut(s)	477
BshNI	GGYRCC	1 cut(s)	661
BshVI	ATCGAT	2 cut(s)	180, 465
BsiHKAI	GWGCWC	2 cut(s)	524, 765
BsiSI	CCGG	2 cut(s)	197, 512
BslFI	GGGAC	1 cut(s)	634
BsmAI	GTCTC	1 cut(s)	62
BsmFI	GGGAC	1 cut(s)	634
BsnI	GGCC	1 cut(s)	477
Bsp1286I	GDGCHC	2 cut(s)	524, 765
Bsp143I	GATC	4 cut(s)	118, 162, 177, 247
BspANI	GGCC	1 cut(s)	477
BspCNI	CTCAG	2 cut(s)	408, 850
BspDI	ATCGAT	2 cut(s)	180, 465
BspLI	GGNNCC	3 cut(s)	49, 622, 663
BspT107I	GGYRCC	1 cut(s)	661
BsrDI	GCAATG	1 cut(s)	284
BsrFI	RCCGGY	1 cut(s)	196
BssAI	RCCGGY	1 cut(s)	196
BssMI	GATC	4 cut(s)	118, 162, 177, 247
Bst4CI	ACNGT	1 cut(s)	126
BstAPI	GCANNNNNTGC	1 cut(s)	286
BstBAI	YACGTR	2 cut(s)	823, 865
BstDEI	CTNAG	3 cut(s)	395, 608, 837
BstF5I	GGATG	8 cut(s)	145, 280, 489, 582, 693, 773, 811, 857
BstHHI	GCGC	1 cut(s)	542
BstKTI	GATC	4 cut(s)	121, 165, 180, 250
BstMAI	GTCTC	1 cut(s)	62
BstMBI	GATC	4 cut(s)	118, 162, 177, 247
BstMWI	GCNNNNNNNGC	4 cut(s)	277, 286, 790, 901
BstSCI	CCNGG	1 cut(s)	511
BstV1I	GCAGC	6 cut(s)	760, 796, 841, 844, 858, 880
BstV2I	GAAGAC	2 cut(s)	99, 425
Bsu15I	ATCGAT	2 cut(s)	180, 465
BsuRI	GGCC	1 cut(s)	477
BsuTUI	ATCGAT	2 cut(s)	180, 465
BtsCI	GGATG	8 cut(s)	145, 280, 489, 582, 693, 773, 811, 857
CaiI	CAGNNNCTG	2 cut(s)	796, 874
CfoI	GCGC	1 cut(s)	542
Cfr10I	RCCGGY	1 cut(s)	196
Cfr13I	GGNCC	2 cut(s)	621, 686
ClaI	ATCGAT	2 cut(s)	180, 465
Csp6I	GTAC	3 cut(s)	597, 799, 841
CviAII	CATG	4 cut(s)	335, 494, 690, 890
CviQI	GTAC	3 cut(s)	597, 799, 841
DdeI	CTNAG	3 cut(s)	395, 608, 837
DpnI	GATC	4 cut(s)	120, 164, 179, 249
DpnII	GATC	4 cut(s)	118, 162, 177, 247
DraIII	CACNNNGTG	1 cut(s)	593
DriI	GACNNNNNGTC	1 cut(s)	654
Eam1105I	GACNNNNNGTC	1 cut(s)	654
Ecl136II	GAGCTC	1 cut(s)	522
Eco147I	AGGCCT	1 cut(s)	477
Eco24I	GRGCYC	1 cut(s)	524
Eco47I	GGWCC	2 cut(s)	621, 686
Eco53kI	GAGCTC	1 cut(s)	522
EcoICRI	GAGCTC	1 cut(s)	522
EcoO109I	RGGNCCY	1 cut(s)	621
EcoRI	GAATTC	1 cut(s)	352
EcoT22I	ATGCAT	1 cut(s)	695
EcoT38I	GRGCYC	1 cut(s)	524
FaeI	CATG	4 cut(s)	338, 497, 693, 893
FaqI	GGGAC	1 cut(s)	634
FatI	CATG	4 cut(s)	334, 493, 689, 889
FauNDI	CATATG	1 cut(s)	361
FbaI	TGATCA	1 cut(s)	247
Fnu4HI	GCNGC	6 cut(s)	749, 785, 830, 833, 869, 872
FokI	GGATG	8 cut(s)	132, 267, 476, 589, 680, 760, 798, 844
FriOI	GRGCYC	1 cut(s)	524
Fsp4HI	GCNGC	6 cut(s)	749, 785, 830, 833, 869, 872
FspBI	CTAG	3 cut(s)	116, 300, 654
GlaI	GCGC	1 cut(s)	541
GluI	GCNGC	6 cut(s)	749, 785, 830, 833, 869, 872
HaeIII	GGCC	1 cut(s)	477
HapII	CCGG	2 cut(s)	197, 512
HhaI	GCGC	1 cut(s)	542
Hin1II	CATG	4 cut(s)	338, 497, 693, 893
Hin6I	GCGC	1 cut(s)	540
HinP1I	GCGC	1 cut(s)	540
HincII	GTYRAC	2 cut(s)	25, 331
HindII	GTYRAC	2 cut(s)	25, 331
HinfI	GANTC	3 cut(s)	185, 502, 581
HpaI	GTTAAC	2 cut(s)	25, 331
HpaII	CCGG	2 cut(s)	197, 512
HphI	GGTGA	6 cut(s)	17, 77, 186, 361, 501, 870
Hpy166II	GTNNAC	2 cut(s)	25, 331
Hpy188I	TCNGA	6 cut(s)	14, 91, 252, 265, 398, 630
Hpy188III	TCNNGA	5 cut(s)	116, 166, 300, 916, 941
Hpy8I	GTNNAC	2 cut(s)	25, 331
Hpy99I	CGWCG	1 cut(s)	745
HpyAV	CCTTC	3 cut(s)	467, 567, 825
HpyCH4III	ACNGT	1 cut(s)	126
HpyCH4IV	ACGT	3 cut(s)	743, 822, 864
HpyCH4V	TGCA	8 cut(s)	145, 271, 425, 482, 693, 748, 868, 926
HpyF10VI	GCNNNNNNNGC	4 cut(s)	277, 286, 790, 901
HpyF3I	CTNAG	3 cut(s)	395, 608, 837
HpySE526I	ACGT	3 cut(s)	743, 822, 864
Hsp92II	CATG	4 cut(s)	338, 497, 693, 893
HspAI	GCGC	1 cut(s)	540
Ksp22I	TGATCA	1 cut(s)	247
KspAI	GTTAAC	2 cut(s)	25, 331
Kzo9I	GATC	4 cut(s)	118, 162, 177, 247
LmnI	GCTCC	1 cut(s)	527
LpnPI	CCDG	8 cut(s)	210, 219, 465, 525, 644, 710, 725, 901
Lsp1109I	GCAGC	6 cut(s)	760, 796, 841, 844, 858, 880
LweI	GCATC	4 cut(s)	154, 289, 702, 913
MaeI	CTAG	3 cut(s)	116, 300, 654
MaeII	ACGT	3 cut(s)	743, 822, 864
MaeIII	GTNAC	2 cut(s)	646, 876
MalI	GATC	4 cut(s)	120, 164, 179, 249
MboI	GATC	4 cut(s)	118, 162, 177, 247
MboII	GAAGA	8 cut(s)	86, 104, 252, 288, 315, 430, 624, 662
MhlI	GDGCHC	2 cut(s)	524, 765
MluCI	AATT	6 cut(s)	238, 292, 306, 352, 882, 959
MlyI	GAGTC	1 cut(s)	590
MmeI	TCCRAC	2 cut(s)	118, 664
MnlI	CCTC	6 cut(s)	242, 392, 595, 675, 804, 846
Mph1103I	ATGCAT	1 cut(s)	695
MseI	TTAA	3 cut(s)	24, 330, 981
MslI	CAYNNNNRTG	1 cut(s)	150
MspA1I	CMGCKG	1 cut(s)	871
MspI	CCGG	2 cut(s)	197, 512
MspR9I	CCNGG	1 cut(s)	513
MwoI	GCNNNNNNNGC	4 cut(s)	277, 286, 790, 901
NciI	CCSGG	1 cut(s)	513
NdeI	CATATG	1 cut(s)	361
NdeII	GATC	4 cut(s)	118, 162, 177, 247
NlaIII	CATG	4 cut(s)	338, 497, 693, 893
NlaIV	GGNNCC	3 cut(s)	49, 622, 663
NmuCI	GTSAC	2 cut(s)	646, 876
NsiI	ATGCAT	1 cut(s)	695
PceI	AGGCCT	1 cut(s)	477
PfeI	GAWTC	2 cut(s)	185, 502
PkrI	GCNGC	6 cut(s)	750, 786, 831, 834, 870, 873
PleI	GAGTC	1 cut(s)	589
PpsI	GAGTC	1 cut(s)	589
Ppu21I	YACGTR	2 cut(s)	823, 865
PpuMI	RGGWCCY	1 cut(s)	621
PsiI	TTATAA	1 cut(s)	105
Psp124BI	GAGCTC	1 cut(s)	524
Psp5II	RGGWCCY	1 cut(s)	621
PspN4I	GGNNCC	3 cut(s)	49, 622, 663
PspPI	GGNCC	2 cut(s)	621, 686
PspPPI	RGGWCCY	1 cut(s)	621
PstNI	CAGNNNCTG	2 cut(s)	796, 874
PvuII	CAGCTG	1 cut(s)	871
RsaI	GTAC	3 cut(s)	598, 800, 842
RsaNI	GTAC	3 cut(s)	597, 799, 841
RseI	CAYNNNNRTG	1 cut(s)	150
SacI	GAGCTC	1 cut(s)	524
SaqAI	TTAA	3 cut(s)	24, 330, 981
SatI	GCNGC	6 cut(s)	749, 785, 830, 833, 869, 872
Sau3AI	GATC	4 cut(s)	118, 162, 177, 247
Sau96I	GGNCC	2 cut(s)	621, 686
SchI	GAGTC	1 cut(s)	590
ScrFI	CCNGG	1 cut(s)	513
SduI	GDGCHC	2 cut(s)	524, 765
SfaNI	GCATC	4 cut(s)	154, 289, 702, 913
SinI	GGWCC	2 cut(s)	621, 686
SmiMI	CAYNNNNRTG	1 cut(s)	150
SmlI	CTYRAG	1 cut(s)	678
SmoI	CTYRAG	1 cut(s)	678
Sse9I	AATT	6 cut(s)	238, 292, 306, 352, 882, 959
SseBI	AGGCCT	1 cut(s)	477
SspI	AATATT	2 cut(s)	936, 989
SspMI	CTAG	3 cut(s)	116, 300, 654
SstI	GAGCTC	1 cut(s)	524
StuI	AGGCCT	1 cut(s)	477
StyD4I	CCNGG	1 cut(s)	511
TaaI	ACNGT	1 cut(s)	126
TaiI	ACGT	3 cut(s)	746, 825, 867
TaqI	TCGA	3 cut(s)	180, 275, 465
TasI	AATT	6 cut(s)	238, 292, 306, 352, 882, 959
TfiI	GAWTC	2 cut(s)	185, 502
Tru1I	TTAA	3 cut(s)	24, 330, 981
Tru9I	TTAA	3 cut(s)	24, 330, 981
TseFI	GTSAC	2 cut(s)	646, 876
TseI	GCWGC	6 cut(s)	748, 784, 829, 832, 868, 871
Tsp45I	GTSAC	2 cut(s)	646, 876
TspDTI	ATGAA	9 cut(s)	168, 198, 431, 478, 486, 629, 662, 800, 875
VpaK11BI	GGWCC	2 cut(s)	621, 686
XapI	RAATTY	3 cut(s)	238, 292, 352
XbaI	TCTAGA	2 cut(s)	115, 299
XspI	CTAG	3 cut(s)	116, 300, 654
Zsp2I	ATGCAT	1 cut(s)	695

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.