RLG00000033651

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000885
Physical Location & Seq
Reverse (-)
30197866 .. 30201045
3180 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033651

Sequence Viewer

Length: 486 bp
ATGGTTACTTTGTGCACTACCCTTGAAGGACGGGCATTTCCTAATGGAAGGATGGAGTCATCACAAAGTAGTGCGACGACACATCTTAGAAGATTTGCGACCTATCAAAGTTGCCTTCATTGTGTGACACCTGATCAGATGCCTCATATTCAAACTGAAGTTGGATTATCGTCACCAAATGTGCCTTGTATGCAGCAGCAACAACCTTTCTACCAGCAACAACAACATTCTTACCATCAAACAACGTCGCAGCGTTGCTACGAGCACTATCAACCATCATTTCAGCAGCTGCAGCCTCCGCACCAAGAACTTCATCCTTCCTACATGCAGCCGCCGCCACCAATTCATCATGTGCCTTACTCGCTCAAGATGTTCAAGAATGATGCGACCCGAATATTTCAAGATTTGAATTTTTGGCAATTTTGTTTCGTCATAATTTTATTAGGAAATATTTTCTCTTTCTTAAGGCTTTGTGGAAATAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

162

Amino Acids

18.82

Weight (kDa)

7.69

Isoelectric Point (pI)

79.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 299, 332, 335
AcsI RAATTY 1 cut(s) 409
AcuI CTGAAG 1 cut(s) 177
AflII CTTAAG 1 cut(s) 463
AgsI TTSAA 5 cut(s) 26, 152, 376, 401, 409
AluBI AGCT 1 cut(s) 289
AluI AGCT 1 cut(s) 289
Alw21I GWGCWC 2 cut(s) 17, 267
Alw44I GTGCAC 1 cut(s) 13
AlwNI CAGNNNCTG 1 cut(s) 289
ApaLI GTGCAC 1 cut(s) 13
ApeKI GCWGC 7 cut(s) 193, 196, 250, 286, 289, 292, 328
ApoI RAATTY 1 cut(s) 409
AsuHPI GGTGA 1 cut(s) 165
BaeGI GKGCMC 1 cut(s) 17
Bbv12I GWGCWC 2 cut(s) 17, 267
BbvI GCAGC 7 cut(s) 205, 208, 262, 276, 298, 304, 340
BccI CCATC 3 cut(s) 46, 243, 283
BclI TGATCA 1 cut(s) 133
BfmI CTRYAG 1 cut(s) 290
BfrI CTTAAG 1 cut(s) 463
BisI GCNGC 9 cut(s) 194, 197, 251, 287, 290, 293, 329, 332, 335
BlsI GCNGC 9 cut(s) 195, 198, 252, 288, 291, 294, 330, 333, 336
BmsI GCATC 2 cut(s) 129, 373
BpuEI CTTGAG 1 cut(s) 350
BseGI GGATG 2 cut(s) 57, 313
BseSI GKGCMC 1 cut(s) 17
BseXI GCAGC 7 cut(s) 205, 208, 262, 276, 298, 304, 340
BsiHKAI GWGCWC 2 cut(s) 17, 267
Bsp1286I GDGCHC 2 cut(s) 17, 267
Bsp143I GATC 1 cut(s) 133
BspACI CCGC 3 cut(s) 299, 332, 335
BspMAI CTGCAG 1 cut(s) 294
BspTI CTTAAG 1 cut(s) 463
BssMI GATC 1 cut(s) 133
BstAFI CTTAAG 1 cut(s) 463
BstDEI CTNAG 1 cut(s) 86
BstF5I GGATG 2 cut(s) 57, 313
BstKTI GATC 1 cut(s) 136
BstMBI GATC 1 cut(s) 133
BstMWI GCNNNNNNNGC 5 cut(s) 190, 292, 298, 334, 361
BstNSI RCATGY 1 cut(s) 328
BstSFI CTRYAG 1 cut(s) 290
BstSLI GKGCMC 1 cut(s) 17
BstV1I GCAGC 7 cut(s) 205, 208, 262, 276, 298, 304, 340
BtsCI GGATG 2 cut(s) 57, 313
CaiI CAGNNNCTG 1 cut(s) 289
CviAII CATG 2 cut(s) 325, 350
CviJI RGCY 4 cut(s) 289, 295, 331, 469
CviKI_1 RGCY 4 cut(s) 289, 295, 331, 469
DdeI CTNAG 1 cut(s) 86
DpnI GATC 1 cut(s) 135
DpnII GATC 1 cut(s) 133
Eco57I CTGAAG 1 cut(s) 177
FaeI CATG 2 cut(s) 328, 353
FaiI YATR 5 cut(s) 147, 191, 326, 351, 434
FatI CATG 2 cut(s) 324, 349
FbaI TGATCA 1 cut(s) 133
Fnu4HI GCNGC 9 cut(s) 194, 197, 251, 287, 290, 293, 329, 332, 335
FokI GGATG 2 cut(s) 64, 300
Fsp4HI GCNGC 9 cut(s) 194, 197, 251, 287, 290, 293, 329, 332, 335
GluI GCNGC 9 cut(s) 194, 197, 251, 287, 290, 293, 329, 332, 335
Hin1II CATG 2 cut(s) 328, 353
HinfI GANTC 1 cut(s) 56
HphI GGTGA 1 cut(s) 165
Hpy166II GTNNAC 1 cut(s) 15
Hpy188I TCNGA 1 cut(s) 138
Hpy188III TCNNGA 3 cut(s) 367, 376, 401
Hpy8I GTNNAC 1 cut(s) 15
Hpy99I CGWCG 2 cut(s) 79, 250
HpyAV CCTTC 4 cut(s) 20, 42, 125, 327
HpyCH4IV ACGT 1 cut(s) 245
HpyCH4V TGCA 4 cut(s) 15, 193, 292, 328
HpyF10VI GCNNNNNNNGC 5 cut(s) 190, 292, 298, 334, 361
HpyF3I CTNAG 1 cut(s) 86
HpySE526I ACGT 1 cut(s) 245
Hsp92II CATG 2 cut(s) 328, 353
Ksp22I TGATCA 1 cut(s) 133
Kzo9I GATC 1 cut(s) 133
LpnPI CCDG 2 cut(s) 144, 227
Lsp1109I GCAGC 7 cut(s) 205, 208, 262, 276, 298, 304, 340
LweI GCATC 2 cut(s) 129, 373
MaeII ACGT 1 cut(s) 245
MaeIII GTNAC 3 cut(s) 4, 124, 171
MalI GATC 1 cut(s) 135
MboI GATC 1 cut(s) 133
MboII GAAGA 1 cut(s) 102
MhlI GDGCHC 2 cut(s) 17, 267
MluCI AATT 5 cut(s) 342, 409, 419, 435, 481
MlyI GAGTC 1 cut(s) 65
MmeI TCCRAC 1 cut(s) 142
MnlI CCTC 2 cut(s) 153, 306
MseI TTAA 1 cut(s) 464
MspA1I CMGCKG 1 cut(s) 289
MspCI CTTAAG 1 cut(s) 463
MwoI GCNNNNNNNGC 5 cut(s) 190, 292, 298, 334, 361
NdeII GATC 1 cut(s) 133
NlaIII CATG 2 cut(s) 328, 353
NmuCI GTSAC 2 cut(s) 124, 171
NspI RCATGY 1 cut(s) 328
PkrI GCNGC 9 cut(s) 195, 198, 252, 288, 291, 294, 330, 333, 336
PleI GAGTC 1 cut(s) 64
PpsI GAGTC 1 cut(s) 64
PstI CTGCAG 1 cut(s) 294
PstNI CAGNNNCTG 1 cut(s) 289
PvuII CAGCTG 1 cut(s) 289
SaqAI TTAA 1 cut(s) 464
SatI GCNGC 9 cut(s) 194, 197, 251, 287, 290, 293, 329, 332, 335
Sau3AI GATC 1 cut(s) 133
SchI GAGTC 1 cut(s) 65
SduI GDGCHC 2 cut(s) 17, 267
SetI ASST 5 cut(s) 104, 133, 208, 248, 291
SfaNI GCATC 2 cut(s) 129, 373
SfcI CTRYAG 1 cut(s) 290
SmlI CTYRAG 2 cut(s) 365, 463
SmoI CTYRAG 2 cut(s) 365, 463
Sse9I AATT 5 cut(s) 342, 409, 419, 435, 481
SsiI CCGC 3 cut(s) 299, 332, 335
SspI AATATT 2 cut(s) 396, 451
TaiI ACGT 1 cut(s) 248
TasI AATT 5 cut(s) 342, 409, 419, 435, 481
TauI GCSGC 2 cut(s) 334, 337
Tru1I TTAA 1 cut(s) 464
Tru9I TTAA 1 cut(s) 464
TseFI GTSAC 2 cut(s) 124, 171
TseI GCWGC 7 cut(s) 193, 196, 250, 286, 289, 292, 328
Tsp45I GTSAC 2 cut(s) 124, 171
TspDTI ATGAA 3 cut(s) 107, 302, 335
Vha464I CTTAAG 1 cut(s) 463
VneI GTGCAC 1 cut(s) 13
XapI RAATTY 1 cut(s) 409
XceI RCATGY 1 cut(s) 328
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.