Rh5DG465900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000885
Physical Location & Seq
Forward (+)
74043666 .. 74044827
1162 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG465900.1

Sequence Viewer

Length: 381 bp
ATGGAGATAATCAATGATGATGACCTCAAAAATTTTATTGATCAGAGCATTTCTTCCGATATGCACTTGAAGCATCCATTGCCGAATTCTTCTGGAAGGATGGAGTCCTCACATAGTGGTACAACACATCTTCGAAGATTTGGGACCTATCCGAGTTGCGTTCATTGTGTGACACCTGTTCAGGTGCCTCATCTTCATACTCAAGTTGGACCATCATCACCAAATGTCCCTTGTATGCAGCAGCAGCAGCAACAACCTTTCTACCAGCAACAACAACATTCTTACCAACAGACGGCGTTGCAGCCTTGCTACGAGCACTATCAACCATCCTTTCAGCAGCCACAACCTCTGTGCCAACAACTTCATCCTTCCTACATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

126

Amino Acids

14.53

Weight (kDa)

6.32

Isoelectric Point (pI)

81.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 184
AcsI RAATTY 2 cut(s) 31, 85
AdeI CACNNNGTG 1 cut(s) 116
AfaI GTAC 1 cut(s) 121
AfiI CCNNNNNNNGG 1 cut(s) 292
AflIII ACRYGT 1 cut(s) 375
AgsI TTSAA 1 cut(s) 70
Alw21I GWGCWC 1 cut(s) 318
ApeKI GCWGC 6 cut(s) 238, 241, 244, 247, 301, 337
ApoI RAATTY 2 cut(s) 31, 85
AspS9I GGNCC 2 cut(s) 144, 209
AsuHPI GGTGA 1 cut(s) 210
AsuII TTCGAA 1 cut(s) 133
AvaII GGWCC 2 cut(s) 144, 209
BanI GGYRCC 1 cut(s) 184
Bbv12I GWGCWC 1 cut(s) 318
BbvI GCAGC 6 cut(s) 250, 253, 256, 259, 313, 349
BccI CCATC 3 cut(s) 94, 220, 334
BceAI ACGGC 1 cut(s) 309
BclI TGATCA 1 cut(s) 40
BisI GCNGC 6 cut(s) 239, 242, 245, 248, 302, 338
BlsI GCNGC 6 cut(s) 240, 243, 246, 249, 303, 339
Bme18I GGWCC 2 cut(s) 144, 209
BmgT120I GGNCC 2 cut(s) 144, 209
BmiI GGNNCC 2 cut(s) 145, 186
BmsI GCATC 1 cut(s) 82
Bpu14I TTCGAA 1 cut(s) 133
BpuEI CTTGAG 1 cut(s) 186
Bsc4I CCNNNNNNNGG 1 cut(s) 292
Bse3DI GCAATG 1 cut(s) 77
BseGI GGATG 4 cut(s) 73, 105, 326, 364
BseLI CCNNNNNNNGG 1 cut(s) 292
BseMI GCAATG 1 cut(s) 77
BseXI GCAGC 6 cut(s) 250, 253, 256, 259, 313, 349
BshNI GGYRCC 1 cut(s) 184
BsiHKAI GWGCWC 1 cut(s) 318
BslFI GGGAC 2 cut(s) 157, 212
BslI CCNNNNNNNGG 1 cut(s) 292
BsmFI GGGAC 2 cut(s) 157, 212
Bsp119I TTCGAA 1 cut(s) 133
Bsp1286I GDGCHC 1 cut(s) 318
Bsp143I GATC 1 cut(s) 40
BspLI GGNNCC 2 cut(s) 145, 186
BspT104I TTCGAA 1 cut(s) 133
BspT107I GGYRCC 1 cut(s) 184
BsrDI GCAATG 1 cut(s) 77
BssMI GATC 1 cut(s) 40
BstAPI GCANNNNNTGC 1 cut(s) 79
BstBI TTCGAA 1 cut(s) 133
BstF5I GGATG 4 cut(s) 73, 105, 326, 364
BstKTI GATC 1 cut(s) 43
BstMBI GATC 1 cut(s) 40
BstMWI GCNNNNNNNGC 4 cut(s) 70, 79, 244, 247
BstNSI RCATGY 1 cut(s) 379
BstV1I GCAGC 6 cut(s) 250, 253, 256, 259, 313, 349
BtsCI GGATG 4 cut(s) 73, 105, 326, 364
Cfr13I GGNCC 2 cut(s) 144, 209
Csp6I GTAC 1 cut(s) 120
CviAII CATG 1 cut(s) 376
CviJI RGCY 2 cut(s) 304, 340
CviKI_1 RGCY 2 cut(s) 304, 340
CviQI GTAC 1 cut(s) 120
DpnI GATC 1 cut(s) 42
DpnII GATC 1 cut(s) 40
DraIII CACNNNGTG 1 cut(s) 116
Eco47I GGWCC 2 cut(s) 144, 209
EcoO109I RGGNCCY 1 cut(s) 144
EcoRI GAATTC 1 cut(s) 85
FaeI CATG 1 cut(s) 379
FaiI YATR 5 cut(s) 62, 114, 198, 236, 377
FaqI GGGAC 2 cut(s) 157, 212
FatI CATG 1 cut(s) 375
FbaI TGATCA 1 cut(s) 40
Fnu4HI GCNGC 6 cut(s) 239, 242, 245, 248, 302, 338
FokI GGATG 4 cut(s) 60, 112, 313, 351
Fsp4HI GCNGC 6 cut(s) 239, 242, 245, 248, 302, 338
GluI GCNGC 6 cut(s) 239, 242, 245, 248, 302, 338
Hin1II CATG 1 cut(s) 379
HinfI GANTC 1 cut(s) 104
HphI GGTGA 1 cut(s) 210
Hpy188I TCNGA 3 cut(s) 45, 58, 153
Hpy188III TCNNGA 1 cut(s) 93
HpyAV CCTTC 2 cut(s) 90, 378
HpyCH4V TGCA 3 cut(s) 64, 238, 301
HpyF10VI GCNNNNNNNGC 4 cut(s) 70, 79, 244, 247
Hsp92II CATG 1 cut(s) 379
Ksp22I TGATCA 1 cut(s) 40
Kzo9I GATC 1 cut(s) 40
LpnPI CCDG 4 cut(s) 78, 167, 189, 278
Lsp1109I GCAGC 6 cut(s) 250, 253, 256, 259, 313, 349
LweI GCATC 1 cut(s) 82
MaeIII GTNAC 1 cut(s) 169
MalI GATC 1 cut(s) 42
MboI GATC 1 cut(s) 40
MboII GAAGA 5 cut(s) 45, 81, 122, 147, 185
MhlI GDGCHC 1 cut(s) 318
MluCI AATT 2 cut(s) 31, 85
MlyI GAGTC 1 cut(s) 113
MmeI TCCRAC 1 cut(s) 187
MnlI CCTC 4 cut(s) 35, 118, 198, 357
MwoI GCNNNNNNNGC 4 cut(s) 70, 79, 244, 247
NdeII GATC 1 cut(s) 40
NlaIII CATG 1 cut(s) 379
NlaIV GGNNCC 2 cut(s) 145, 186
NmuCI GTSAC 1 cut(s) 169
NspI RCATGY 1 cut(s) 379
NspV TTCGAA 1 cut(s) 133
PciI ACATGT 1 cut(s) 375
PkrI GCNGC 6 cut(s) 240, 243, 246, 249, 303, 339
PleI GAGTC 1 cut(s) 112
PpsI GAGTC 1 cut(s) 112
PpuMI RGGWCCY 1 cut(s) 144
PscI ACATGT 1 cut(s) 375
Psp5II RGGWCCY 1 cut(s) 144
PspN4I GGNNCC 2 cut(s) 145, 186
PspPI GGNCC 2 cut(s) 144, 209
PspPPI RGGWCCY 1 cut(s) 144
RsaI GTAC 1 cut(s) 121
RsaNI GTAC 1 cut(s) 120
SatI GCNGC 6 cut(s) 239, 242, 245, 248, 302, 338
Sau3AI GATC 1 cut(s) 40
Sau96I GGNCC 2 cut(s) 144, 209
SchI GAGTC 1 cut(s) 113
SduI GDGCHC 1 cut(s) 318
SetI ASST 6 cut(s) 27, 149, 178, 186, 259, 349
SfaNI GCATC 1 cut(s) 82
SfuI TTCGAA 1 cut(s) 133
SinI GGWCC 2 cut(s) 144, 209
SmlI CTYRAG 1 cut(s) 201
SmoI CTYRAG 1 cut(s) 201
Sse9I AATT 2 cut(s) 31, 85
TaqI TCGA 1 cut(s) 133
TasI AATT 2 cut(s) 31, 85
TseFI GTSAC 1 cut(s) 169
TseI GCWGC 6 cut(s) 238, 241, 244, 247, 301, 337
Tsp45I GTSAC 1 cut(s) 169
TspDTI ATGAA 3 cut(s) 152, 185, 353
VpaK11BI GGWCC 2 cut(s) 144, 209
XapI RAATTY 2 cut(s) 31, 85
XceI RCATGY 1 cut(s) 379
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.