Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0000885

Physical Location & Seq

Genomic Coordinates Forward (+)

29602505 .. 29608942

Gene Structure 6438 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033611

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1209 bp

ATGCTGCAACCCTATTCTTTATACCAAGAAGAGGTTCCTCCACTGGTACCAGTGCCAAAGCATCTTCACAGCAAGCTGCAGCATGACACAAAACCACTATACCCTTGTTTGTTTTGGGGAGCAGTATCTACTGTAAATTCGCGCGAAGCAGAACTCATTCAGGAAATTGTTGAGGTGATATGGAAGAAATTGCATCCCTCTACTTCAAAATCAGCCATAAACAATGTGTCATCAATACCGTCTTCGTCTTCTTCTTTTTGTCGACCAAAGTATGATGTCCTTCTAAGTTTTAGAGGGAAGGATACCCGCTTGAATTTTACGGACCATCTACATGCTGCATTAATTCAGTCCGGAATTTCCACCTTTAGAGATGACATAGATCTTGAGAAAGGAAAGTCCATTCGCAAAGAACTCGACAAAGCAATTGAAGGATCAAAGGTTTGGGTTGTCATCGTTTCACCAGACTATGCTTCTTCAAAATGGTGCTTGAATGAGCTTTTGAAGATTCTTGAATGCGCTTTTGAAGATTCTTCCTTACCGCAACCTGAAGAAAAAGCCCATAATCTGGAGAGCAGATACAAAATAAATAAGTGGAAGGCTAGTTTGCAGAACAAGGAAGACATCTCGAACCATAACAAAAGGAAAATAGTTAAGCTTAGCCTCACGGTTAATTATGATGGAGAATGGGCCAGTCCTGTTGACACTGGTGATAAAACAAAAGAAATAGTGATTTCAGATGACAGTACTTTTGATGAGCTTCTGGATCAAATATATAGTTTTGTTGGGGTGGATCCAAAACAAAATGAGAGCAATACTGATGATAACCAAAGAATTTTTATTAATAAGAGCCTTTCTTCCAGTACGGGCTTCAAGAATCCACTGCGGAATGCTTGTGAAAGGGTGGAGTCATCAGAGAACAGCAATACGGCACATATTAACAGATTTGGGACCTATCACAGTTACTTTCATGGTTTGACTCCTGATCCAGTGCCTTATCTGCAGCAGCAGCAGCAGCAGCCTTTCTACCAGCAGCAACAACCGTCTTACCAATGGCAGCCTTACTACAAACCTTCCTATCAGCAGCTGCAATGGGAATACCAACAGCCCCATTATTTCTACATGCCGCCACAATCTTCATGCCAACAGCCCCCCGAGATCTTCTGGCATCACTATCAGCCCCATATGTACCCACCAACATCTTACCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_3 LRR_8 NB-ARC TIR

Protein Analysis

403

Amino Acids

46.67

Weight (kDa)

6.21

Isoelectric Point (pI)

63.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	90 - 177	9.2e-28	TIR domain
TIR_2	PF13676	93 - 171	8.5e-14	TIR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000885)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g26890 FvH4_2g26890 FvH4_2g26890 FvH4_3g20951 FvH4_3g20960 FvH4_3g20962
malus_domestica	MD03G1083300.v1.1 MD03G1083600.v1.1 MD08G1022000.v1.1 MD10G1261100.v1.1
prunus_persica	Prupe.1G183900_v2.0.a1 Prupe.1G184000_v2.0.a1
pyrus_communis	pycom03g06620 pycom05g26220 pycom10g21740
rosa_chinensis	RchiOBHm_Chr3g0475491 RchiOBHm_Chr5g0034591 RchiOBHm_Chr5g0035231 RchiOBHm_Chr5g0035371 RchiOBHm_Chr5g0035701 RchiOBHm_Chr5g0035711
rosa_laevigata	RLG00000005586 RLG00000022983 RLG00000033611 RLG00000033626 RLG00000033630 RLG00000033640 RLG00000033646 RLG00000033651 RLG00000033652
rosa_multiflora	Rmu_co8204696.1_g000001 Rmu_co8330583.1_g000001 Rmu_sc0001493.1_g000069 Rmu_sc0001493.1_g000077 Rmu_sc0001493.1_g000082 Rmu_sc0002460.1_g000096 Rmu_sc0002482.1_g000010 Rmu_sc0002482.1_g000012 Rmu_sc0002935.1_g000002 Rmu_sc0017377.1_g000001 Rmu_sc0026350.1_g000001 Rmu_sc0041591.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042270 Rroxscaffold_1G00044790 Rroxscaffold_1G00044920 Rroxscaffold_1G00045020 Rroxscaffold_1G00045140 Rroxscaffold_1G00045740
rosa_rugosa	Rorug05G0146700 Rorug05G0146800 Rorug05G0150900 Rorug05G0151900
rosa_samantha	Rh5CG274900 Rh5CG276400 Rh5DG247800 Rh5DG266600 Rh5DG465900
rosa_wichuraiana	Rw0G005840 Rw5G021800 Rw5G021890 Rw5G022260 Rw5G022350 Rw5G022510 Rw5G022560 Rw5G023950 Rw5G023960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	46
AccB1I	GGYRCC	1 cut(s)	46
AccB7I	CCANNNNNTGG	1 cut(s)	565
AccI	GTMKAC	1 cut(s)	262
AccII	CGCG	2 cut(s)	142, 144
AccIII	TCCGGA	1 cut(s)	350
AciI	CCGC	4 cut(s)	307, 539, 883, 1124
AclWI	GGATC	5 cut(s)	439, 771, 785, 798, 977
AcsI	RAATTY	4 cut(s)	136, 313, 354, 831
AcuI	CTGAAG	1 cut(s)	567
AfaI	GTAC	4 cut(s)	48, 745, 862, 1187
AfiI	CCNNNNNNNGG	2 cut(s)	31, 565
AgsI	TTSAA	9 cut(s)	207, 313, 428, 477, 490, 502, 512, 524, 871
AjuI	GAANNNNNNNTTGG	2 cut(s)	18, 50
AluBI	AGCT	5 cut(s)	76, 496, 655, 757, 1084
AluI	AGCT	5 cut(s)	76, 496, 655, 757, 1084
AlwI	GGATC	5 cut(s)	439, 771, 785, 798, 977
AlwNI	CAGNNNCTG	1 cut(s)	1084
Ama87I	CYCGRG	1 cut(s)	1151
Aor13HI	TCCGGA	1 cut(s)	350
AoxI	GGCC	1 cut(s)	687
ApoI	RAATTY	4 cut(s)	136, 313, 354, 831
ArsI	GACNNNNNNTTYG	2 cut(s)	731, 763
AseI	ATTAAT	2 cut(s)	341, 840
Asp700I	GAANNNNTTC	2 cut(s)	33, 156
Asp718I	GGTACC	1 cut(s)	46
AspLEI	GCGC	2 cut(s)	144, 518
AspS9I	GGNCC	3 cut(s)	322, 687, 948
AsuHPI	GGTGA	3 cut(s)	187, 450, 719
AvaI	CYCGRG	1 cut(s)	1151
AvaII	GGWCC	2 cut(s)	322, 948
BamHI	GGATCC	1 cut(s)	790
BanI	GGYRCC	1 cut(s)	46
BbsI	GAAGAC	3 cut(s)	234, 240, 624
BccI	CCATC	2 cut(s)	333, 671
BceAI	ACGGC	1 cut(s)	942
BcgI	CGANNNNNNTGC	2 cut(s)	394, 428
BciVI	GTATCC	1 cut(s)	295
BfaI	CTAG	1 cut(s)	600
BfmI	CTRYAG	2 cut(s)	77, 998
BfuI	GTATCC	1 cut(s)	295
BglII	AGATCT	2 cut(s)	379, 1155
BlpI	GCTNAGC	1 cut(s)	656
BmcAI	AGTACT	1 cut(s)	745
Bme18I	GGWCC	2 cut(s)	322, 948
BmeT110I	CYCGRG	1 cut(s)	1151
BmgT120I	GGNCC	3 cut(s)	322, 687, 948
BmiI	GGNNCC	4 cut(s)	36, 48, 792, 949
BmsI	GCATC	3 cut(s)	70, 202, 1174
BpiI	GAAGAC	3 cut(s)	234, 240, 624
BpmI	CTGGAG	1 cut(s)	587
Bpu1102I	GCTNAGC	1 cut(s)	656
BpuEI	CTTGAG	1 cut(s)	404
BsaWI	WCCGGW	1 cut(s)	350
Bsc4I	CCNNNNNNNGG	2 cut(s)	31, 565
Bse1I	ACTGG	7 cut(s)	48, 50, 690, 709, 858, 986, 1204
Bse3DI	GCAATG	1 cut(s)	1094
BseAI	TCCGGA	1 cut(s)	350
BseGI	GGATG	1 cut(s)	193
BseLI	CCNNNNNNNGG	2 cut(s)	31, 565
BseMI	GCAATG	1 cut(s)	1094
BseNI	ACTGG	7 cut(s)	48, 50, 690, 709, 858, 986, 1204
Bsh1236I	CGCG	2 cut(s)	142, 144
BshFI	GGCC	1 cut(s)	689
BshNI	GGYRCC	1 cut(s)	46
BsiHKCI	CYCGRG	1 cut(s)	1151
BsiSI	CCGG	1 cut(s)	351
BslFI	GGGAC	1 cut(s)	961
BslI	CCNNNNNNNGG	2 cut(s)	31, 565
BsmFI	GGGAC	1 cut(s)	961
BsmI	GAATGC	2 cut(s)	518, 892
BsnI	GGCC	1 cut(s)	689
BsoBI	CYCGRG	1 cut(s)	1151
Bsp13I	TCCGGA	1 cut(s)	350
Bsp143I	GATC	6 cut(s)	379, 431, 763, 790, 982, 1155
Bsp1720I	GCTNAGC	1 cut(s)	656
BspACI	CCGC	4 cut(s)	307, 539, 883, 1124
BspANI	GGCC	1 cut(s)	689
BspEI	TCCGGA	1 cut(s)	350
BspFNI	CGCG	2 cut(s)	142, 144
BspLI	GGNNCC	4 cut(s)	36, 48, 792, 949
BspMAI	CTGCAG	2 cut(s)	81, 1002
BspPI	GGATC	5 cut(s)	439, 771, 785, 798, 977
BspT107I	GGYRCC	1 cut(s)	46
BsrDI	GCAATG	1 cut(s)	1094
BsrI	ACTGG	7 cut(s)	48, 50, 690, 709, 858, 986, 1204
BssMI	GATC	6 cut(s)	379, 431, 763, 790, 982, 1155
Bst4CI	ACNGT	6 cut(s)	133, 240, 667, 743, 959, 1041
Bst6I	CTCTTC	1 cut(s)	24
BstC8I	GCNNGC	1 cut(s)	74
BstDEI	CTNAG	2 cut(s)	284, 656
BstF5I	GGATG	1 cut(s)	193
BstFNI	CGCG	2 cut(s)	142, 144
BstHHI	GCGC	2 cut(s)	144, 518
BstKTI	GATC	6 cut(s)	382, 434, 766, 793, 985, 1158
BstMBI	GATC	6 cut(s)	379, 431, 763, 790, 982, 1155
BstMWI	GCNNNNNNNGC	5 cut(s)	997, 1006, 1009, 1012, 1015
BstNSI	RCATGY	2 cut(s)	335, 1123
BstSFI	CTRYAG	2 cut(s)	77, 998
BstUI	CGCG	2 cut(s)	142, 144
BstV2I	GAAGAC	3 cut(s)	234, 240, 624
BstX2I	RGATCY	3 cut(s)	379, 790, 1155
BstYI	RGATCY	3 cut(s)	379, 790, 1155
BsuI	GTATCC	1 cut(s)	295
BsuRI	GGCC	1 cut(s)	689
BtsCI	GGATG	1 cut(s)	193
BtsI	GCAGTG	1 cut(s)	878
BtsIMutI	CAGTG	5 cut(s)	41, 57, 702, 878, 993
Cac8I	GCNNGC	1 cut(s)	74
CaiI	CAGNNNCTG	1 cut(s)	1084
CfoI	GCGC	2 cut(s)	144, 518
Cfr13I	GGNCC	3 cut(s)	322, 687, 948
Csp6I	GTAC	4 cut(s)	47, 744, 861, 1186
CviAII	CATG	5 cut(s)	83, 332, 968, 1120, 1137
CviQI	GTAC	4 cut(s)	47, 744, 861, 1186
DdeI	CTNAG	2 cut(s)	284, 656
DpnI	GATC	6 cut(s)	381, 433, 765, 792, 984, 1157
DpnII	GATC	6 cut(s)	379, 431, 763, 790, 982, 1155
Eam1104I	CTCTTC	1 cut(s)	24
EarI	CTCTTC	1 cut(s)	24
Eco47I	GGWCC	2 cut(s)	322, 948
Eco57I	CTGAAG	1 cut(s)	567
Eco88I	CYCGRG	1 cut(s)	1151
EcoO109I	RGGNCCY	1 cut(s)	948
FaeI	CATG	5 cut(s)	86, 335, 971, 1123, 1140
FaqI	GGGAC	1 cut(s)	961
FatI	CATG	5 cut(s)	82, 331, 967, 1119, 1136
FauI	CCCGC	1 cut(s)	314
FauNDI	CATATG	1 cut(s)	1182
FblI	GTMKAC	1 cut(s)	262
FokI	GGATG	1 cut(s)	180
FspBI	CTAG	1 cut(s)	600
GlaI	GCGC	2 cut(s)	143, 517
GsuI	CTGGAG	1 cut(s)	587
HaeIII	GGCC	1 cut(s)	689
HapII	CCGG	1 cut(s)	351
HhaI	GCGC	2 cut(s)	144, 518
Hin1II	CATG	5 cut(s)	86, 335, 971, 1123, 1140
Hin6I	GCGC	2 cut(s)	142, 516
HinP1I	GCGC	2 cut(s)	142, 516
HincII	GTYRAC	2 cut(s)	263, 700
HindII	GTYRAC	2 cut(s)	263, 700
HindIII	AAGCTT	1 cut(s)	653
HinfI	GANTC	5 cut(s)	505, 527, 874, 905, 976
HpaII	CCGG	1 cut(s)	351
HphI	GGTGA	3 cut(s)	187, 450, 719
Hpy166II	GTNNAC	2 cut(s)	263, 700
Hpy188I	TCNGA	2 cut(s)	736, 913
Hpy188III	TCNNGA	9 cut(s)	161, 351, 383, 509, 566, 625, 761, 871, 980
Hpy8I	GTNNAC	2 cut(s)	263, 700
HpyAV	CCTTC	5 cut(s)	290, 292, 422, 589, 1080
HpyCH4III	ACNGT	6 cut(s)	133, 240, 667, 743, 959, 1041
HpyCH4V	TGCA	7 cut(s)	7, 79, 193, 338, 607, 1000, 1087
HpyF10VI	GCNNNNNNNGC	5 cut(s)	997, 1006, 1009, 1012, 1015
HpyF3I	CTNAG	2 cut(s)	284, 656
Hsp92II	CATG	5 cut(s)	86, 335, 971, 1123, 1140
HspAI	GCGC	2 cut(s)	142, 516
Kpn2I	TCCGGA	1 cut(s)	350
KpnI	GGTACC	1 cut(s)	50
Kzo9I	GATC	6 cut(s)	379, 431, 763, 790, 982, 1155
LmnI	GCTCC	1 cut(s)	119
LweI	GCATC	3 cut(s)	70, 202, 1174
MaeI	CTAG	1 cut(s)	600
MaeIII	GTNAC	1 cut(s)	959
MalI	GATC	6 cut(s)	381, 433, 765, 792, 984, 1157
MboI	GATC	6 cut(s)	379, 431, 763, 790, 982, 1155
MfeI	CAATTG	1 cut(s)	423
MflI	RGATCY	3 cut(s)	379, 790, 1155
MluCI	AATT	9 cut(s)	136, 165, 188, 313, 342, 354, 423, 670, 831
MlyI	GAGTC	2 cut(s)	914, 970
MnlI	CCTC	6 cut(s)	25, 48, 166, 208, 287, 671
MroI	TCCGGA	1 cut(s)	350
MroXI	GAANNNNTTC	2 cut(s)	33, 156
MseI	TTAA	5 cut(s)	341, 651, 669, 840, 936
MslI	CAYNNNNRTG	1 cut(s)	330
MspA1I	CMGCKG	1 cut(s)	1084
MspI	CCGG	1 cut(s)	351
MunI	CAATTG	1 cut(s)	423
Mva1269I	GAATGC	2 cut(s)	518, 892
MvnI	CGCG	2 cut(s)	142, 144
MwoI	GCNNNNNNNGC	5 cut(s)	997, 1006, 1009, 1012, 1015
NdeI	CATATG	1 cut(s)	1182
NdeII	GATC	6 cut(s)	379, 431, 763, 790, 982, 1155
NlaIII	CATG	5 cut(s)	86, 335, 971, 1123, 1140
NlaIV	GGNNCC	4 cut(s)	36, 48, 792, 949
NspI	RCATGY	2 cut(s)	335, 1123
PctI	GAATGC	2 cut(s)	518, 892
PdmI	GAANNNNTTC	2 cut(s)	33, 156
PfeI	GAWTC	3 cut(s)	505, 527, 874
PflMI	CCANNNNNTGG	1 cut(s)	565
PleI	GAGTC	2 cut(s)	913, 970
PpsI	GAGTC	2 cut(s)	913, 970
PpuMI	RGGWCCY	1 cut(s)	948
PshBI	ATTAAT	2 cut(s)	341, 840
Psp5II	RGGWCCY	1 cut(s)	948
PspN4I	GGNNCC	4 cut(s)	36, 48, 792, 949
PspPI	GGNCC	3 cut(s)	322, 687, 948
PspPPI	RGGWCCY	1 cut(s)	948
PstI	CTGCAG	2 cut(s)	81, 1002
PstNI	CAGNNNCTG	1 cut(s)	1084
PsuI	RGATCY	3 cut(s)	379, 790, 1155
PvuII	CAGCTG	1 cut(s)	1084
RsaI	GTAC	4 cut(s)	48, 745, 862, 1187
RsaNI	GTAC	4 cut(s)	47, 744, 861, 1186
RseI	CAYNNNNRTG	1 cut(s)	330
SalI	GTCGAC	1 cut(s)	261
SaqAI	TTAA	5 cut(s)	341, 651, 669, 840, 936
Sau3AI	GATC	6 cut(s)	379, 431, 763, 790, 982, 1155
Sau96I	GGNCC	3 cut(s)	322, 687, 948
ScaI	AGTACT	1 cut(s)	745
SchI	GAGTC	2 cut(s)	914, 970
SfaNI	GCATC	3 cut(s)	70, 202, 1174
SfcI	CTRYAG	2 cut(s)	77, 998
SinI	GGWCC	2 cut(s)	322, 948
SmiMI	CAYNNNNRTG	1 cut(s)	330
SmlI	CTYRAG	1 cut(s)	383
SmoI	CTYRAG	1 cut(s)	383
Sse9I	AATT	9 cut(s)	136, 165, 188, 313, 342, 354, 423, 670, 831
SsiI	CCGC	4 cut(s)	307, 539, 883, 1124
SspMI	CTAG	1 cut(s)	600
TaaI	ACNGT	6 cut(s)	133, 240, 667, 743, 959, 1041
TaqI	TCGA	3 cut(s)	262, 414, 626
TasI	AATT	9 cut(s)	136, 165, 188, 313, 342, 354, 423, 670, 831
TatI	WGTACW	1 cut(s)	743
TauI	GCSGC	1 cut(s)	1126
TfiI	GAWTC	3 cut(s)	505, 527, 874
Tru1I	TTAA	5 cut(s)	341, 651, 669, 840, 936
Tru9I	TTAA	5 cut(s)	341, 651, 669, 840, 936
TscAI	CASTG	5 cut(s)	48, 57, 709, 885, 993
TspDTI	ATGAA	2 cut(s)	956, 1125
TspGWI	ACGGA	1 cut(s)	335
TspRI	CASTG	5 cut(s)	48, 57, 709, 885, 993
Van91I	CCANNNNNTGG	1 cut(s)	565
VpaK11BI	GGWCC	2 cut(s)	322, 948
VspI	ATTAAT	2 cut(s)	341, 840
XapI	RAATTY	4 cut(s)	136, 313, 354, 831
XceI	RCATGY	2 cut(s)	335, 1123
XmiI	GTMKAC	1 cut(s)	262
XmnI	GAANNNNTTC	2 cut(s)	33, 156
XspI	CTAG	1 cut(s)	600
ZrmI	AGTACT	1 cut(s)	745

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.