Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0000885

Physical Location & Seq

Genomic Coordinates Reverse (-)

30047576 .. 30054129

Gene Structure 6554 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG276400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGACATCCGATGCTCCATCCACAAGCTTCAGTGCCCTACGGGATGAAGTGTTTAAGTGGTCTAAGCACATCAGGTCTAAAATTCCAAATGAAGGATTTTCATTGACGTCCTATGGTGCATCCATTGGCTTCAGTGGAATCAGTGCCCTACTGGACGAATTGCTTGTAACCAGTAGTCTGGAGGAATTTCGTGTAATCAGTAGTGCCCTCCTGGAGGAATCGGTTGTAATCAGTAATAGACATGAAGCAAGAGAAAGCTTGATAGTCATAGACTTATGGTGGGAATTGATCGAATTGGTGAATTACATAGAGCAATTTTGGGTCACGGCACGGCAACGACAAAGAGCATTTCCACTTTCCGAGCTTCATCGAGATATTCTGATGGAGTCCTCACATAGTGGTACAACACATATGAGAAGATTTGGGACCTATTCGAGTTGCGTTCATTGTGTGACACCTGATCAGGTGCCTCATCTTCATACTCAGGTTGGACCATATATCGTCACCGAATGTGCCTTGTATGCAGCAGCAGCAACAACCTTTCTACCAGCAGCAACAACATTCTTACCAACAGACGACGTTGCAGCCTTGCTACGAGCACTATCAACCATCCTTTCAGCAACCACAGCCTCTGTACCAACAACTTCATCCTTCCTACATGCAGCAGCAGCAGTCTCACTACCAACAGCCAAATCCTTCCTACATGCAGCCGCTGTCACCAATTCATCATATGCCTTGCTCGCTCAAGATGTTCTGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

253

Amino Acids

27.65

Weight (kDa)

5.53

Isoelectric Point (pI)

41.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000885)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g26890 FvH4_2g26890 FvH4_2g26890 FvH4_3g20951 FvH4_3g20960 FvH4_3g20962
malus_domestica	MD03G1083300.v1.1 MD03G1083600.v1.1 MD08G1022000.v1.1 MD10G1261100.v1.1
prunus_persica	Prupe.1G183900_v2.0.a1 Prupe.1G184000_v2.0.a1
pyrus_communis	pycom03g06620 pycom05g26220 pycom10g21740
rosa_chinensis	RchiOBHm_Chr3g0475491 RchiOBHm_Chr5g0034591 RchiOBHm_Chr5g0035231 RchiOBHm_Chr5g0035371 RchiOBHm_Chr5g0035701 RchiOBHm_Chr5g0035711
rosa_laevigata	RLG00000005586 RLG00000022983 RLG00000033611 RLG00000033626 RLG00000033630 RLG00000033640 RLG00000033646 RLG00000033651 RLG00000033652
rosa_multiflora	Rmu_co8204696.1_g000001 Rmu_co8330583.1_g000001 Rmu_sc0001493.1_g000069 Rmu_sc0001493.1_g000077 Rmu_sc0001493.1_g000082 Rmu_sc0002460.1_g000096 Rmu_sc0002482.1_g000010 Rmu_sc0002482.1_g000012 Rmu_sc0002935.1_g000002 Rmu_sc0017377.1_g000001 Rmu_sc0026350.1_g000001 Rmu_sc0041591.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042270 Rroxscaffold_1G00044790 Rroxscaffold_1G00044920 Rroxscaffold_1G00045020 Rroxscaffold_1G00045140 Rroxscaffold_1G00045740
rosa_rugosa	Rorug05G0146700 Rorug05G0146800 Rorug05G0150900 Rorug05G0151900
rosa_samantha	Rh5CG274900 Rh5CG276400 Rh5DG247800 Rh5DG266600 Rh5DG465900
rosa_wichuraiana	Rw0G005840 Rw5G021800 Rw5G021890 Rw5G022260 Rw5G022350 Rw5G022510 Rw5G022560 Rw5G023950 Rw5G023960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	110
AccB1I	GGYRCC	1 cut(s)	466
AciI	CCGC	1 cut(s)	711
AcsI	RAATTY	2 cut(s)	81, 185
AcuI	CTGAAG	2 cut(s)	13, 115
AcyI	GRCGYC	1 cut(s)	107
AdeI	CACNNNGTG	1 cut(s)	398
AfaI	GTAC	2 cut(s)	403, 636
AfiI	CCNNNNNNNGG	2 cut(s)	92, 214
AjnI	CCWGG	1 cut(s)	210
AluBI	AGCT	3 cut(s)	27, 258, 364
AluI	AGCT	3 cut(s)	27, 258, 364
Alw21I	GWGCWC	1 cut(s)	601
Alw26I	GTCTC	1 cut(s)	679
AlwNI	CAGNNNCTG	2 cut(s)	632, 713
ApeKI	GCWGC	9 cut(s)	524, 527, 530, 551, 584, 662, 665, 668, 707
ApoI	RAATTY	2 cut(s)	81, 185
AspS9I	GGNCC	2 cut(s)	426, 491
AsuHPI	GGTGA	3 cut(s)	310, 496, 709
AvaII	GGWCC	2 cut(s)	426, 491
BaeGI	GKGCMC	3 cut(s)	37, 148, 208
BanI	GGYRCC	1 cut(s)	466
Bbv12I	GWGCWC	1 cut(s)	601
BbvI	GCAGC	9 cut(s)	536, 539, 542, 563, 596, 674, 677, 680, 719
BccI	CCATC	3 cut(s)	25, 376, 617
BceAI	ACGGC	2 cut(s)	342, 347
BciT130I	CCWGG	1 cut(s)	212
BclI	TGATCA	1 cut(s)	460
BcoDI	GTCTC	1 cut(s)	679
Bme1390I	CCNGG	1 cut(s)	212
Bme18I	GGWCC	2 cut(s)	426, 491
BmgT120I	GGNCC	2 cut(s)	426, 491
BmiI	GGNNCC	2 cut(s)	427, 468
BmrFI	CCNGG	1 cut(s)	212
BmsI	GCATC	1 cut(s)	128
BpmI	CTGGAG	2 cut(s)	200, 233
BpuEI	CTTGAG	1 cut(s)	729
BsaHI	GRCGYC	1 cut(s)	107
Bsc4I	CCNNNNNNNGG	2 cut(s)	92, 214
Bse1I	ACTGG	2 cut(s)	156, 171
BseBI	CCWGG	1 cut(s)	212
BseGI	GGATG	6 cut(s)	5, 17, 49, 119, 609, 647
BseLI	CCNNNNNNNGG	2 cut(s)	92, 214
BseMII	CTCAG	1 cut(s)	497
BseNI	ACTGG	2 cut(s)	156, 171
BseSI	GKGCMC	3 cut(s)	37, 148, 208
BseXI	GCAGC	9 cut(s)	536, 539, 542, 563, 596, 674, 677, 680, 719
BshNI	GGYRCC	1 cut(s)	466
BsiHKAI	GWGCWC	1 cut(s)	601
BslFI	GGGAC	1 cut(s)	439
BslI	CCNNNNNNNGG	2 cut(s)	92, 214
BsmAI	GTCTC	1 cut(s)	679
BsmFI	GGGAC	1 cut(s)	439
Bsp1286I	GDGCHC	4 cut(s)	37, 148, 208, 601
Bsp143I	GATC	2 cut(s)	288, 460
BspACI	CCGC	1 cut(s)	711
BspCNI	CTCAG	1 cut(s)	496
BspLI	GGNNCC	2 cut(s)	427, 468
BspT107I	GGYRCC	1 cut(s)	466
BsrI	ACTGG	2 cut(s)	156, 171
BssMI	GATC	2 cut(s)	288, 460
BssNI	GRCGYC	1 cut(s)	107
Bst2UI	CCWGG	1 cut(s)	212
BstACI	GRCGYC	1 cut(s)	107
BstC8I	GCNNGC	1 cut(s)	741
BstDEI	CTNAG	2 cut(s)	63, 483
BstENI	CCTNNNNNAGG	1 cut(s)	212
BstF5I	GGATG	6 cut(s)	5, 17, 49, 119, 609, 647
BstKTI	GATC	2 cut(s)	291, 463
BstMAI	GTCTC	1 cut(s)	679
BstMBI	GATC	2 cut(s)	288, 460
BstMWI	GCNNNNNNNGC	5 cut(s)	521, 530, 626, 668, 740
BstNI	CCWGG	1 cut(s)	212
BstNSI	RCATGY	2 cut(s)	662, 707
BstSCI	CCNGG	1 cut(s)	210
BstSLI	GKGCMC	3 cut(s)	37, 148, 208
BstV1I	GCAGC	9 cut(s)	536, 539, 542, 563, 596, 674, 677, 680, 719
BstXI	CCANNNNNNTGG	1 cut(s)	178
BtsCI	GGATG	6 cut(s)	5, 17, 49, 119, 609, 647
BtsIMutI	CAGTG	3 cut(s)	37, 139, 148
Cac8I	GCNNGC	1 cut(s)	741
CaiI	CAGNNNCTG	2 cut(s)	632, 713
Cfr13I	GGNCC	2 cut(s)	426, 491
Csp6I	GTAC	2 cut(s)	402, 635
CviAII	CATG	3 cut(s)	242, 659, 704
CviJI	RGCY	8 cut(s)	27, 129, 258, 364, 587, 629, 689, 710
CviKI_1	RGCY	8 cut(s)	27, 129, 258, 364, 587, 629, 689, 710
CviQI	GTAC	2 cut(s)	402, 635
DdeI	CTNAG	2 cut(s)	63, 483
DpnI	GATC	2 cut(s)	290, 462
DpnII	GATC	2 cut(s)	288, 460
DraIII	CACNNNGTG	1 cut(s)	398
Eco47I	GGWCC	2 cut(s)	426, 491
Eco57I	CTGAAG	2 cut(s)	13, 115
EcoNI	CCTNNNNNAGG	1 cut(s)	212
EcoO109I	RGGNCCY	1 cut(s)	426
EcoRII	CCWGG	1 cut(s)	210
FaeI	CATG	3 cut(s)	245, 662, 707
FaqI	GGGAC	1 cut(s)	439
FatI	CATG	3 cut(s)	241, 658, 703
FauNDI	CATATG	2 cut(s)	411, 730
FbaI	TGATCA	1 cut(s)	460
FokI	GGATG	5 cut(s)	4, 56, 106, 596, 634
GsuI	CTGGAG	2 cut(s)	200, 233
Hin1I	GRCGYC	1 cut(s)	107
Hin1II	CATG	3 cut(s)	245, 662, 707
HindIII	AAGCTT	2 cut(s)	25, 256
HinfI	GANTC	3 cut(s)	138, 218, 386
HphI	GGTGA	3 cut(s)	310, 496, 709
Hpy188I	TCNGA	3 cut(s)	10, 361, 381
Hpy188III	TCNNGA	4 cut(s)	179, 371, 746, 755
Hpy99I	CGWCG	1 cut(s)	581
HpyAV	CCTTC	3 cut(s)	86, 661, 706
HpyCH4IV	ACGT	2 cut(s)	107, 579
HpyCH4V	TGCA	5 cut(s)	119, 524, 584, 662, 707
HpyF10VI	GCNNNNNNNGC	5 cut(s)	521, 530, 626, 668, 740
HpyF3I	CTNAG	2 cut(s)	63, 483
HpySE526I	ACGT	2 cut(s)	107, 579
Hsp92I	GRCGYC	1 cut(s)	107
Hsp92II	CATG	3 cut(s)	245, 662, 707
Ksp22I	TGATCA	1 cut(s)	460
Kzo9I	GATC	2 cut(s)	288, 460
LmnI	GCTCC	1 cut(s)	19
Lsp1109I	GCAGC	9 cut(s)	536, 539, 542, 563, 596, 674, 677, 680, 719
LweI	GCATC	1 cut(s)	128
MaeII	ACGT	2 cut(s)	107, 579
MaeIII	GTNAC	5 cut(s)	166, 322, 451, 502, 715
MalI	GATC	2 cut(s)	290, 462
MboI	GATC	2 cut(s)	288, 460
MboII	GAAGA	2 cut(s)	429, 467
MhlI	GDGCHC	4 cut(s)	37, 148, 208, 601
MluCI	AATT	8 cut(s)	81, 158, 185, 284, 293, 301, 314, 721
MlyI	GAGTC	1 cut(s)	395
MmeI	TCCRAC	1 cut(s)	469
MnlI	CCTC	6 cut(s)	175, 208, 218, 400, 480, 640
MseI	TTAA	1 cut(s)	54
MspA1I	CMGCKG	1 cut(s)	713
MspR9I	CCNGG	1 cut(s)	212
MvaI	CCWGG	1 cut(s)	212
MwoI	GCNNNNNNNGC	5 cut(s)	521, 530, 626, 668, 740
NdeI	CATATG	2 cut(s)	411, 730
NdeII	GATC	2 cut(s)	288, 460
NlaIII	CATG	3 cut(s)	245, 662, 707
NlaIV	GGNNCC	2 cut(s)	427, 468
NmuCI	GTSAC	4 cut(s)	322, 451, 502, 715
NspI	RCATGY	2 cut(s)	662, 707
PfeI	GAWTC	2 cut(s)	138, 218
PfoI	TCCNGGA	1 cut(s)	210
PleI	GAGTC	1 cut(s)	394
PpsI	GAGTC	1 cut(s)	394
PpuMI	RGGWCCY	1 cut(s)	426
Psp5II	RGGWCCY	1 cut(s)	426
Psp6I	CCWGG	1 cut(s)	210
PspGI	CCWGG	1 cut(s)	210
PspN4I	GGNNCC	2 cut(s)	427, 468
PspPI	GGNCC	2 cut(s)	426, 491
PspPPI	RGGWCCY	1 cut(s)	426
PstNI	CAGNNNCTG	2 cut(s)	632, 713
RsaI	GTAC	2 cut(s)	403, 636
RsaNI	GTAC	2 cut(s)	402, 635
SaqAI	TTAA	1 cut(s)	54
Sau3AI	GATC	2 cut(s)	288, 460
Sau96I	GGNCC	2 cut(s)	426, 491
SchI	GAGTC	1 cut(s)	395
ScrFI	CCNGG	1 cut(s)	212
SduI	GDGCHC	4 cut(s)	37, 148, 208, 601
SfaNI	GCATC	1 cut(s)	128
SinI	GGWCC	2 cut(s)	426, 491
SmlI	CTYRAG	1 cut(s)	744
SmoI	CTYRAG	1 cut(s)	744
Sse9I	AATT	8 cut(s)	81, 158, 185, 284, 293, 301, 314, 721
SsiI	CCGC	1 cut(s)	711
StyD4I	CCNGG	1 cut(s)	210
TaiI	ACGT	2 cut(s)	110, 582
TaqI	TCGA	3 cut(s)	291, 370, 434
TasI	AATT	8 cut(s)	81, 158, 185, 284, 293, 301, 314, 721
TauI	GCSGC	1 cut(s)	713
TfiI	GAWTC	2 cut(s)	138, 218
Tru1I	TTAA	1 cut(s)	54
Tru9I	TTAA	1 cut(s)	54
TscAI	CASTG	3 cut(s)	37, 139, 148
TseFI	GTSAC	4 cut(s)	322, 451, 502, 715
TseI	GCWGC	9 cut(s)	524, 527, 530, 551, 584, 662, 665, 668, 707
Tsp45I	GTSAC	4 cut(s)	322, 451, 502, 715
TspDTI	ATGAA	9 cut(s)	60, 90, 105, 258, 356, 434, 467, 636, 714
TspRI	CASTG	3 cut(s)	37, 139, 148
VpaK11BI	GGWCC	2 cut(s)	426, 491
XagI	CCTNNNNNAGG	1 cut(s)	212
XapI	RAATTY	2 cut(s)	81, 185
XceI	RCATGY	2 cut(s)	662, 707
ZraI	GACGTC	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.