Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000885

Physical Location & Seq

Genomic Coordinates Reverse (-)

29695334 .. 29702816

Gene Structure 7483 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ31455

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGCCATACCAGTACAACGACCCCAGAAACTCCAATGTCACAAGATGCCAAAAATAAATACACGTCTACGTTTTCCGGAGATTCATATTGGCTTCTTTTTGTCTTCCGATAACAATCATATATATGTCGTCACTCAAAGTTTGGCACGGTCGGAGACGGCATTGGAGGACCTCGCGGAGCTTCTTGAAGCCGCGAACTATAGTAGTAATGTACAAAACACAGTGCTGCCAATATTCTACGGTGTTGAGCCATCCGATGTGCGACATCAAACAGCAAGTTTTGCACAAGCCTTCGCCAACTATGAGAAAAAGTACAAGGATGATCCACAAAAAGTAGAAAGATGGAGAGCTGCTTTAAGGAAACTGGCAAATCTCGCTGGCTGGGATTCAAAGCACTACATTATTACTTTTTTTTTTTCCCTTATTTGTCATCTATTAATATTTAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_3 NB-ARC TIR

Protein Analysis

149

Amino Acids

17.23

Weight (kDa)

8.91

Isoelectric Point (pI)

64.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	41 - 132	1.3e-15	TIR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000885)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g26890 FvH4_2g26890 FvH4_2g26890 FvH4_3g20951 FvH4_3g20960 FvH4_3g20962
malus_domestica	MD03G1083300.v1.1 MD03G1083600.v1.1 MD08G1022000.v1.1 MD10G1261100.v1.1
prunus_persica	Prupe.1G183900_v2.0.a1 Prupe.1G184000_v2.0.a1
pyrus_communis	pycom03g06620 pycom05g26220 pycom10g21740
rosa_chinensis	RchiOBHm_Chr3g0475491 RchiOBHm_Chr5g0034591 RchiOBHm_Chr5g0035231 RchiOBHm_Chr5g0035371 RchiOBHm_Chr5g0035701 RchiOBHm_Chr5g0035711
rosa_laevigata	RLG00000005586 RLG00000022983 RLG00000033611 RLG00000033626 RLG00000033630 RLG00000033640 RLG00000033646 RLG00000033651 RLG00000033652
rosa_multiflora	Rmu_co8204696.1_g000001 Rmu_co8330583.1_g000001 Rmu_sc0001493.1_g000069 Rmu_sc0001493.1_g000077 Rmu_sc0001493.1_g000082 Rmu_sc0002460.1_g000096 Rmu_sc0002482.1_g000010 Rmu_sc0002482.1_g000012 Rmu_sc0002935.1_g000002 Rmu_sc0017377.1_g000001 Rmu_sc0026350.1_g000001 Rmu_sc0041591.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042270 Rroxscaffold_1G00044790 Rroxscaffold_1G00044920 Rroxscaffold_1G00045020 Rroxscaffold_1G00045140 Rroxscaffold_1G00045740
rosa_rugosa	Rorug05G0146700 Rorug05G0146800 Rorug05G0150900 Rorug05G0151900
rosa_samantha	Rh5CG274900 Rh5CG276400 Rh5DG247800 Rh5DG266600 Rh5DG465900
rosa_wichuraiana	Rw0G005840 Rw5G021800 Rw5G021890 Rw5G022260 Rw5G022350 Rw5G022510 Rw5G022560 Rw5G023950 Rw5G023960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	67
AccII	CGCG	2 cut(s)	176, 194
AccIII	TCCGGA	1 cut(s)	76
AciI	CCGC	2 cut(s)	176, 192
AclWI	GGATC	1 cut(s)	317
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	3 cut(s)	15, 213, 314
AflIII	ACRYGT	1 cut(s)	62
AgsI	TTSAA	2 cut(s)	188, 390
AjiI	CACGTC	1 cut(s)	65
AluBI	AGCT	2 cut(s)	181, 350
AluI	AGCT	2 cut(s)	181, 350
Alw26I	GTCTC	1 cut(s)	149
AlwI	GGATC	1 cut(s)	317
Aor13HI	TCCGGA	1 cut(s)	76
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	2 cut(s)	226, 350
AseI	ATTAAT	1 cut(s)	437
AspS9I	GGNCC	1 cut(s)	169
AvaII	GGWCC	1 cut(s)	169
BalI	TGGCCA	1 cut(s)	5
BbsI	GAAGAC	1 cut(s)	96
BbvI	GCAGC	2 cut(s)	213, 337
BccI	CCATC	2 cut(s)	259, 336
BceAI	ACGGC	1 cut(s)	174
BcoDI	GTCTC	1 cut(s)	149
BfmI	CTRYAG	1 cut(s)	199
BisI	GCNGC	3 cut(s)	192, 227, 351
BlsI	GCNGC	3 cut(s)	193, 228, 352
Bme18I	GGWCC	1 cut(s)	169
BmgBI	CACGTC	1 cut(s)	65
BmgT120I	GGNCC	1 cut(s)	169
BmsI	GCATC	1 cut(s)	36
BpiI	GAAGAC	1 cut(s)	96
BsaBI	GATNNNNATC	1 cut(s)	114
BsaWI	WCCGGW	1 cut(s)	76
Bse1I	ACTGG	2 cut(s)	11, 369
Bse8I	GATNNNNATC	1 cut(s)	114
BseAI	TCCGGA	1 cut(s)	76
BseGI	GGATG	2 cut(s)	251, 325
BseJI	GATNNNNATC	1 cut(s)	114
BseNI	ACTGG	2 cut(s)	11, 369
BseXI	GCAGC	2 cut(s)	213, 337
BseYI	CCCAGC	1 cut(s)	381
Bsh1236I	CGCG	2 cut(s)	176, 194
Bsh1285I	CGRYCG	1 cut(s)	152
BshFI	GGCC	1 cut(s)	5
BsiEI	CGRYCG	1 cut(s)	152
BsiSI	CCGG	1 cut(s)	77
BsmAI	GTCTC	1 cut(s)	149
BsmBI	CGTCTC	1 cut(s)	149
BsnI	GGCC	1 cut(s)	5
Bsp13I	TCCGGA	1 cut(s)	76
Bsp1407I	TGTACA	1 cut(s)	211
Bsp143I	GATC	1 cut(s)	322
BspACI	CCGC	2 cut(s)	176, 192
BspANI	GGCC	1 cut(s)	5
BspEI	TCCGGA	1 cut(s)	76
BspFNI	CGCG	2 cut(s)	176, 194
BspPI	GGATC	1 cut(s)	317
BsrGI	TGTACA	1 cut(s)	211
BsrI	ACTGG	2 cut(s)	11, 369
BssMI	GATC	1 cut(s)	322
Bst4CI	ACNGT	3 cut(s)	150, 223, 242
BstAPI	GCANNNNNTGC	1 cut(s)	281
BstAUI	TGTACA	1 cut(s)	211
BstC8I	GCNNGC	1 cut(s)	379
BstF5I	GGATG	2 cut(s)	251, 325
BstFNI	CGCG	2 cut(s)	176, 194
BstKTI	GATC	1 cut(s)	325
BstMAI	GTCTC	1 cut(s)	149
BstMBI	GATC	1 cut(s)	322
BstMCI	CGRYCG	1 cut(s)	152
BstMWI	GCNNNNNNNGC	2 cut(s)	281, 374
BstSFI	CTRYAG	1 cut(s)	199
BstUI	CGCG	2 cut(s)	176, 194
BstV1I	GCAGC	2 cut(s)	213, 337
BstV2I	GAAGAC	1 cut(s)	96
BsuRI	GGCC	1 cut(s)	5
BtrI	CACGTC	1 cut(s)	65
BtsCI	GGATG	2 cut(s)	251, 325
BtsIMutI	CAGTG	1 cut(s)	228
Cac8I	GCNNGC	1 cut(s)	379
Cfr13I	GGNCC	1 cut(s)	169
Csp6I	GTAC	3 cut(s)	14, 212, 313
CviJI	RGCY	8 cut(s)	5, 93, 181, 191, 250, 290, 350, 381
CviKI_1	RGCY	8 cut(s)	5, 93, 181, 191, 250, 290, 350, 381
CviQI	GTAC	3 cut(s)	14, 212, 313
DpnI	GATC	1 cut(s)	324
DpnII	GATC	1 cut(s)	322
EaeI	YGGCCR	1 cut(s)	3
Eco47I	GGWCC	1 cut(s)	169
EcoO109I	RGGNCCY	1 cut(s)	169
Esp3I	CGTCTC	1 cut(s)	149
FaiI	YATR	8 cut(s)	8, 87, 120, 122, 124, 126, 201, 303
FblI	GTMKAC	1 cut(s)	67
Fnu4HI	GCNGC	3 cut(s)	192, 227, 351
FokI	GGATG	2 cut(s)	238, 332
Fsp4HI	GCNGC	3 cut(s)	192, 227, 351
GluI	GCNGC	3 cut(s)	192, 227, 351
GsaI	CCCAGC	1 cut(s)	385
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	77
HinfI	GANTC	2 cut(s)	82, 386
HpaII	CCGG	1 cut(s)	77
Hpy166II	GTNNAC	1 cut(s)	68
Hpy188I	TCNGA	3 cut(s)	109, 154, 256
Hpy188III	TCNNGA	2 cut(s)	77, 185
Hpy8I	GTNNAC	1 cut(s)	68
HpyAV	CCTTC	1 cut(s)	301
HpyCH4III	ACNGT	3 cut(s)	150, 223, 242
HpyCH4IV	ACGT	2 cut(s)	64, 70
HpyCH4V	TGCA	1 cut(s)	284
HpyF10VI	GCNNNNNNNGC	2 cut(s)	281, 374
HpySE526I	ACGT	2 cut(s)	64, 70
Kpn2I	TCCGGA	1 cut(s)	76
Kzo9I	GATC	1 cut(s)	322
LmnI	GCTCC	1 cut(s)	178
LpnPI	CCDG	6 cut(s)	24, 38, 90, 350, 363, 367
Lsp1109I	GCAGC	2 cut(s)	213, 337
LweI	GCATC	1 cut(s)	36
MaeII	ACGT	2 cut(s)	64, 70
MaeIII	GTNAC	2 cut(s)	38, 130
MalI	GATC	1 cut(s)	324
MboI	GATC	1 cut(s)	322
MboII	GAAGA	1 cut(s)	96
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	132
MnlI	CCTC	2 cut(s)	160, 182
Mox20I	TGGCCA	1 cut(s)	5
MroI	TCCGGA	1 cut(s)	76
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	356, 437, 448
MslI	CAYNNNNRTG	1 cut(s)	123
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	77
MvnI	CGCG	2 cut(s)	176, 194
MwoI	GCNNNNNNNGC	2 cut(s)	281, 374
NdeII	GATC	1 cut(s)	322
NmuCI	GTSAC	2 cut(s)	38, 130
PfeI	GAWTC	2 cut(s)	82, 386
PkrI	GCNGC	3 cut(s)	193, 228, 352
PpuMI	RGGWCCY	1 cut(s)	169
PshBI	ATTAAT	1 cut(s)	437
Psp5II	RGGWCCY	1 cut(s)	169
PspFI	CCCAGC	1 cut(s)	381
PspPI	GGNCC	1 cut(s)	169
PspPPI	RGGWCCY	1 cut(s)	169
RsaI	GTAC	3 cut(s)	15, 213, 314
RsaNI	GTAC	3 cut(s)	14, 212, 313
RseI	CAYNNNNRTG	1 cut(s)	123
SaqAI	TTAA	3 cut(s)	356, 437, 448
SatI	GCNGC	3 cut(s)	192, 227, 351
Sau3AI	GATC	1 cut(s)	322
Sau96I	GGNCC	1 cut(s)	169
SetI	ASST	5 cut(s)	67, 73, 174, 183, 352
SfaNI	GCATC	1 cut(s)	36
SfcI	CTRYAG	1 cut(s)	199
SinI	GGWCC	1 cut(s)	169
SmiMI	CAYNNNNRTG	1 cut(s)	123
SsiI	CCGC	2 cut(s)	176, 192
SspI	AATATT	2 cut(s)	234, 441
TaaI	ACNGT	3 cut(s)	150, 223, 242
TaiI	ACGT	2 cut(s)	67, 73
TatI	WGTACW	3 cut(s)	13, 211, 312
TauI	GCSGC	1 cut(s)	194
TfiI	GAWTC	2 cut(s)	82, 386
Tru1I	TTAA	3 cut(s)	356, 437, 448
Tru9I	TTAA	3 cut(s)	356, 437, 448
TscAI	CASTG	1 cut(s)	228
TseFI	GTSAC	2 cut(s)	38, 130
TseI	GCWGC	2 cut(s)	226, 350
Tsp45I	GTSAC	2 cut(s)	38, 130
TspDTI	ATGAA	1 cut(s)	74
TspRI	CASTG	1 cut(s)	228
VpaK11BI	GGWCC	1 cut(s)	169
VspI	ATTAAT	1 cut(s)	437
XmiI	GTMKAC	1 cut(s)	67

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.