Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0000885

Physical Location & Seq

Genomic Coordinates Reverse (-)

13985288 .. 13986618

Gene Structure 1331 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g20960.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGAAGTTCAATGATCCATTTACTACTTTCTCCAATTGCTGGATAGAGGACTTGGAGCTCCCACGTCGACCTCAACCCGAGAGTCACGGCTATCTGTTTGATATCATGGTTGCAAACAATCCAATTTTGTACCGAAGAGGAGGTGAAATAGAGCTAGAACGGCTGAATCAGAGCATAAAAACACTTCCACTTTCCGAGCTTCGTCCAGATATTCTAGATGCTCTCCTTCTAAGTGGTGACATACCTGAGTGTCGTATGTTGTTCCCAATAATTTCGCATATCAGCTTCCTACGGGGAAGATTGAAACTCTTAGAAAAGAAGTACGGAACCGGTCATCTATATTTTGTCACTAAAAGTTTGGCACACTCGGAGAAGGCATTGGATGACCTCTTGGAGCATCTCCTAGCAGGAAATGATGACGTAGAAAAAACAGTGCTGCCGATATTCTACGGCGTTGATCCCTCCGACGTACGAAATCAAACCGGATGTTTTGCAGAAGCCTTTGCCAACTATGAGAAAAAGTACAAGGATGAACCACAAAAAGTAGAAAGGTGGAGAGCTGCTTTAACGAAACTGGGAAATCTCGCCGGCTGGGATTCAAAGCACTACTGGCCCGAAGCAAAACTCATTCGAGAAGTTGTTGATGAGATACATAGGAAATTGTATTCCTCTTTTACAAAACCGGCCATCAAAAATCTGCCATCAACACCGTCTTGGTCTTCTTGTTGTCAACGGAATAAGCATGATGTCTTTCTTAGCTTTAGAGGGAAGGATACCCGCTTGAATTTTACGAACCGTCTATATGATGCGTTAATTCAGTGCAGAATTTCCACCTTTAGAGATGACAAAGATCTTCCTAAAGGAATGTCCATTCGCAAACAACTCGACAAATCAATTGAGGAATCAAGGGTTTGGGTTGTCATCGTTTCACCAAATTATGCTTCTTCAAAATGGTGCTTGGATGAGCTCTTAAAGATTCTTCAGTGCAGAAAAGCATCTAAAGTGGCAAAGAAGAATGGAACTTTGATGAAAGCATCTGGAAATGATGAAGATCAACAAGCTCATACTTCTGTGGATGGAGACAAAACACATAAGAAGAAGGCTAGTTTGCGGAACAAGGAAAACATCTCTATTCACGATAACAGGTACGTACGTTATTCCCATCTTCAGTTTCATGCTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_3 LRR_8 NB-ARC TIR

Protein Analysis

395

Amino Acids

45.53

Weight (kDa)

9.0

Isoelectric Point (pI)

43.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	116 - 228	5.3e-20	TIR domain
TIR	PF01582	247 - 334	8.9e-30	TIR domain
TIR_2	PF13676	250 - 330	1.1e-14	TIR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000885)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g26890 FvH4_2g26890 FvH4_2g26890 FvH4_3g20951 FvH4_3g20960 FvH4_3g20962
malus_domestica	MD03G1083300.v1.1 MD03G1083600.v1.1 MD08G1022000.v1.1 MD10G1261100.v1.1
prunus_persica	Prupe.1G183900_v2.0.a1 Prupe.1G184000_v2.0.a1
pyrus_communis	pycom03g06620 pycom05g26220 pycom10g21740
rosa_chinensis	RchiOBHm_Chr3g0475491 RchiOBHm_Chr5g0034591 RchiOBHm_Chr5g0035231 RchiOBHm_Chr5g0035371 RchiOBHm_Chr5g0035701 RchiOBHm_Chr5g0035711
rosa_laevigata	RLG00000005586 RLG00000022983 RLG00000033611 RLG00000033626 RLG00000033630 RLG00000033640 RLG00000033646 RLG00000033651 RLG00000033652
rosa_multiflora	Rmu_co8204696.1_g000001 Rmu_co8330583.1_g000001 Rmu_sc0001493.1_g000069 Rmu_sc0001493.1_g000077 Rmu_sc0001493.1_g000082 Rmu_sc0002460.1_g000096 Rmu_sc0002482.1_g000010 Rmu_sc0002482.1_g000012 Rmu_sc0002935.1_g000002 Rmu_sc0017377.1_g000001 Rmu_sc0026350.1_g000001 Rmu_sc0041591.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042270 Rroxscaffold_1G00044790 Rroxscaffold_1G00044920 Rroxscaffold_1G00045020 Rroxscaffold_1G00045140 Rroxscaffold_1G00045740
rosa_rugosa	Rorug05G0146700 Rorug05G0146800 Rorug05G0150900 Rorug05G0151900
rosa_samantha	Rh5CG274900 Rh5CG276400 Rh5DG247800 Rh5DG266600 Rh5DG465900
rosa_wichuraiana	Rw0G005840 Rw5G021800 Rw5G021890 Rw5G022260 Rw5G022350 Rw5G022510 Rw5G022560 Rw5G023950 Rw5G023960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	39
AccI	GTMKAC	1 cut(s)	67
AciI	CCGC	2 cut(s)	778, 1111
AclWI	GGATC	2 cut(s)	8, 452
AcoI	YGGCCR	1 cut(s)	684
AcsI	RAATTY	2 cut(s)	784, 825
AcuI	CTGAAG	2 cut(s)	965, 1151
AfaI	GTAC	6 cut(s)	131, 323, 471, 524, 1148, 1152
AfiI	CCNNNNNNNGG	1 cut(s)	39
AgeI	ACCGGT	1 cut(s)	329
AgsI	TTSAA	5 cut(s)	10, 304, 600, 784, 948
AjiI	CACGTC	1 cut(s)	65
AjuI	GAANNNNNNNTTGG	2 cut(s)	925, 957
AluBI	AGCT	8 cut(s)	58, 154, 199, 285, 560, 759, 967, 1061
AluI	AGCT	8 cut(s)	58, 154, 199, 285, 560, 759, 967, 1061
Alw21I	GWGCWC	2 cut(s)	60, 969
Alw26I	GTCTC	1 cut(s)	1074
AlwI	GGATC	2 cut(s)	8, 452
Ama87I	CYCGRG	1 cut(s)	77
AoxI	GGCC	2 cut(s)	611, 684
ApeKI	GCWGC	2 cut(s)	436, 560
ApoI	RAATTY	2 cut(s)	784, 825
AsiGI	ACCGGT	1 cut(s)	329
AspS9I	GGNCC	1 cut(s)	612
AsuHPI	GGTGA	3 cut(s)	155, 248, 921
AvaI	CYCGRG	1 cut(s)	77
BaeI	ACNNNNGTAYC	2 cut(s)	1138, 1171
BanII	GRGCYC	2 cut(s)	60, 969
BbsI	GAAGAC	1 cut(s)	711
Bbv12I	GWGCWC	2 cut(s)	60, 969
BbvI	GCAGC	2 cut(s)	423, 547
BccI	CCATC	4 cut(s)	695, 709, 1070, 1170
BceAI	ACGGC	3 cut(s)	103, 176, 466
BcgI	CGANNNNNNTGC	2 cut(s)	865, 899
BciVI	GTATCC	1 cut(s)	766
BcoDI	GTCTC	1 cut(s)	1074
BfaI	CTAG	4 cut(s)	155, 215, 404, 1104
BfuI	GTATCC	1 cut(s)	766
BglII	AGATCT	1 cut(s)	850
BisI	GCNGC	2 cut(s)	437, 561
BlsI	GCNGC	2 cut(s)	438, 562
BmeT110I	CYCGRG	1 cut(s)	77
BmgBI	CACGTC	1 cut(s)	65
BmgT120I	GGNCC	1 cut(s)	612
BmiI	GGNNCC	1 cut(s)	328
BmrI	ACTGGG	1 cut(s)	584
BmsI	GCATC	5 cut(s)	208, 406, 796, 1004, 1043
BmuI	ACTGGG	1 cut(s)	584
BpiI	GAAGAC	1 cut(s)	711
BsaAI	YACGTR	1 cut(s)	1150
BsaBI	GATNNNNATC	1 cut(s)	1050
BsaWI	WCCGGW	2 cut(s)	329, 482
Bsc4I	CCNNNNNNNGG	1 cut(s)	39
Bse118I	RCCGGY	3 cut(s)	329, 587, 682
Bse1I	ACTGG	2 cut(s)	579, 614
Bse8I	GATNNNNATC	1 cut(s)	1050
BseGI	GGATG	5 cut(s)	388, 491, 535, 967, 1081
BseJI	GATNNNNATC	1 cut(s)	1050
BseLI	CCNNNNNNNGG	1 cut(s)	39
BseMII	CTCAG	1 cut(s)	237
BseNI	ACTGG	2 cut(s)	579, 614
BseRI	GAGGAG	1 cut(s)	153
BseXI	GCAGC	2 cut(s)	423, 547
BseYI	CCCAGC	1 cut(s)	591
BsgI	GTGCAG	2 cut(s)	841, 1006
BshFI	GGCC	2 cut(s)	613, 686
BshTI	ACCGGT	1 cut(s)	329
BsiHKAI	GWGCWC	2 cut(s)	60, 969
BsiHKCI	CYCGRG	1 cut(s)	77
BsiSI	CCGG	4 cut(s)	330, 483, 588, 683
BsiWI	CGTACG	2 cut(s)	469, 1150
BslI	CCNNNNNNNGG	1 cut(s)	39
BsmAI	GTCTC	1 cut(s)	1074
BsnI	GGCC	2 cut(s)	613, 686
BsoBI	CYCGRG	1 cut(s)	77
Bsp1286I	GDGCHC	2 cut(s)	60, 969
Bsp143I	GATC	4 cut(s)	13, 457, 850, 1051
BspACI	CCGC	2 cut(s)	778, 1111
BspANI	GGCC	2 cut(s)	613, 686
BspCNI	CTCAG	1 cut(s)	238
BspLI	GGNNCC	1 cut(s)	328
BspPI	GGATC	2 cut(s)	8, 452
BsrFI	RCCGGY	3 cut(s)	329, 587, 682
BsrI	ACTGG	2 cut(s)	579, 614
BssAI	RCCGGY	3 cut(s)	329, 587, 682
BssMI	GATC	4 cut(s)	13, 457, 850, 1051
Bst4CI	ACNGT	3 cut(s)	433, 711, 797
Bst6I	CTCTTC	1 cut(s)	130
BstBAI	YACGTR	1 cut(s)	1150
BstC8I	GCNNGC	1 cut(s)	589
BstDEI	CTNAG	4 cut(s)	230, 246, 310, 755
BstF5I	GGATG	5 cut(s)	388, 491, 535, 967, 1081
BstKTI	GATC	4 cut(s)	16, 460, 853, 1054
BstMAI	GTCTC	1 cut(s)	1074
BstMBI	GATC	4 cut(s)	13, 457, 850, 1051
BstMWI	GCNNNNNNNGC	2 cut(s)	160, 610
BstSNI	TACGTA	1 cut(s)	1150
BstV1I	GCAGC	2 cut(s)	423, 547
BstV2I	GAAGAC	1 cut(s)	711
BstX2I	RGATCY	1 cut(s)	850
BstYI	RGATCY	1 cut(s)	850
BsuI	GTATCC	1 cut(s)	766
BsuRI	GGCC	2 cut(s)	613, 686
BtrI	CACGTC	1 cut(s)	65
BtsCI	GGATG	5 cut(s)	388, 491, 535, 967, 1081
BtsIMutI	CAGTG	3 cut(s)	438, 824, 989
Cac8I	GCNNGC	1 cut(s)	589
Cfr10I	RCCGGY	3 cut(s)	329, 587, 682
Cfr13I	GGNCC	1 cut(s)	612
Csp6I	GTAC	6 cut(s)	130, 322, 470, 523, 1147, 1151
CspAI	ACCGGT	1 cut(s)	329
CviAII	CATG	3 cut(s)	106, 743, 1175
CviQI	GTAC	6 cut(s)	130, 322, 470, 523, 1147, 1151
DdeI	CTNAG	4 cut(s)	230, 246, 310, 755
DpnI	GATC	4 cut(s)	15, 459, 852, 1053
DpnII	GATC	4 cut(s)	13, 457, 850, 1051
EaeI	YGGCCR	1 cut(s)	684
Eam1104I	CTCTTC	1 cut(s)	130
EarI	CTCTTC	1 cut(s)	130
Ecl136II	GAGCTC	2 cut(s)	58, 967
Eco105I	TACGTA	1 cut(s)	1150
Eco24I	GRGCYC	2 cut(s)	60, 969
Eco32I	GATATC	1 cut(s)	103
Eco53kI	GAGCTC	2 cut(s)	58, 967
Eco57I	CTGAAG	2 cut(s)	965, 1151
Eco88I	CYCGRG	1 cut(s)	77
EcoICRI	GAGCTC	2 cut(s)	58, 967
EcoRV	GATATC	1 cut(s)	103
EcoT38I	GRGCYC	2 cut(s)	60, 969
FaeI	CATG	3 cut(s)	109, 746, 1178
FatI	CATG	3 cut(s)	105, 742, 1174
FauI	CCCGC	1 cut(s)	785
FblI	GTMKAC	1 cut(s)	67
Fnu4HI	GCNGC	2 cut(s)	437, 561
FokI	GGATG	5 cut(s)	395, 498, 542, 974, 1088
FriOI	GRGCYC	2 cut(s)	60, 969
Fsp4HI	GCNGC	2 cut(s)	437, 561
FspBI	CTAG	4 cut(s)	155, 215, 404, 1104
GluI	GCNGC	2 cut(s)	437, 561
GsaI	CCCAGC	1 cut(s)	595
HaeIII	GGCC	2 cut(s)	613, 686
HapII	CCGG	4 cut(s)	330, 483, 588, 683
Hin1II	CATG	3 cut(s)	109, 746, 1178
HincII	GTYRAC	2 cut(s)	68, 731
HindII	GTYRAC	2 cut(s)	68, 731
HinfI	GANTC	5 cut(s)	82, 166, 596, 902, 976
HpaII	CCGG	4 cut(s)	330, 483, 588, 683
HphI	GGTGA	3 cut(s)	155, 248, 921
Hpy166II	GTNNAC	2 cut(s)	68, 731
Hpy188I	TCNGA	4 cut(s)	171, 196, 370, 466
Hpy188III	TCNNGA	5 cut(s)	206, 215, 632, 1038, 1136
Hpy8I	GTNNAC	2 cut(s)	68, 731
Hpy99I	CGWCG	2 cut(s)	69, 470
HpyAV	CCTTC	4 cut(s)	236, 367, 763, 1093
HpyCH4III	ACNGT	3 cut(s)	433, 711, 797
HpyCH4IV	ACGT	5 cut(s)	64, 420, 468, 1149, 1153
HpyCH4V	TGCA	4 cut(s)	113, 494, 822, 987
HpyF10VI	GCNNNNNNNGC	2 cut(s)	160, 610
HpyF3I	CTNAG	4 cut(s)	230, 246, 310, 755
HpySE526I	ACGT	5 cut(s)	64, 420, 468, 1149, 1153
Hsp92II	CATG	3 cut(s)	109, 746, 1178
KroI	GCCGGC	1 cut(s)	587
KroNI	GCCGGC	1 cut(s)	589
Kzo9I	GATC	4 cut(s)	13, 457, 850, 1051
LmnI	GCTCC	3 cut(s)	55, 63, 394
Lsp1109I	GCAGC	2 cut(s)	423, 547
LweI	GCATC	5 cut(s)	208, 406, 796, 1004, 1043
MaeI	CTAG	4 cut(s)	155, 215, 404, 1104
MaeII	ACGT	5 cut(s)	64, 420, 468, 1149, 1153
MaeIII	GTNAC	3 cut(s)	83, 236, 346
MalI	GATC	4 cut(s)	15, 459, 852, 1053
MboI	GATC	4 cut(s)	13, 457, 850, 1051
MfeI	CAATTG	2 cut(s)	34, 894
MflI	RGATCY	1 cut(s)	850
MhlI	GDGCHC	2 cut(s)	60, 969
MluCI	AATT	9 cut(s)	34, 123, 270, 659, 784, 813, 825, 894, 934
MlyI	GAGTC	1 cut(s)	91
MmeI	TCCRAC	1 cut(s)	489
MnlI	CCTC	9 cut(s)	40, 81, 131, 134, 398, 472, 679, 758, 892
MroNI	GCCGGC	1 cut(s)	587
MseI	TTAA	4 cut(s)	566, 812, 971, 1183
MspI	CCGG	4 cut(s)	330, 483, 588, 683
MunI	CAATTG	2 cut(s)	34, 894
MwoI	GCNNNNNNNGC	2 cut(s)	160, 610
NaeI	GCCGGC	1 cut(s)	589
NdeII	GATC	4 cut(s)	13, 457, 850, 1051
NgoMIV	GCCGGC	1 cut(s)	587
NlaIII	CATG	3 cut(s)	109, 746, 1178
NlaIV	GGNNCC	1 cut(s)	328
NmuCI	GTSAC	3 cut(s)	83, 236, 346
PdiI	GCCGGC	1 cut(s)	589
PfeI	GAWTC	4 cut(s)	166, 596, 902, 976
Pfl23II	CGTACG	2 cut(s)	469, 1150
PflMI	CCANNNNNTGG	1 cut(s)	39
PinAI	ACCGGT	1 cut(s)	329
PkrI	GCNGC	2 cut(s)	438, 562
PleI	GAGTC	1 cut(s)	90
PpsI	GAGTC	1 cut(s)	90
Ppu21I	YACGTR	1 cut(s)	1150
Psp124BI	GAGCTC	2 cut(s)	60, 969
PspFI	CCCAGC	1 cut(s)	591
PspLI	CGTACG	2 cut(s)	469, 1150
PspN4I	GGNNCC	1 cut(s)	328
PspPI	GGNCC	1 cut(s)	612
PsuI	RGATCY	1 cut(s)	850
RsaI	GTAC	6 cut(s)	131, 323, 471, 524, 1148, 1152
RsaNI	GTAC	6 cut(s)	130, 322, 470, 523, 1147, 1151
SacI	GAGCTC	2 cut(s)	60, 969
SalI	GTCGAC	1 cut(s)	66
SaqAI	TTAA	4 cut(s)	566, 812, 971, 1183
SatI	GCNGC	2 cut(s)	437, 561
Sau3AI	GATC	4 cut(s)	13, 457, 850, 1051
Sau96I	GGNCC	1 cut(s)	612
SchI	GAGTC	1 cut(s)	91
SduI	GDGCHC	2 cut(s)	60, 969
SfaNI	GCATC	5 cut(s)	208, 406, 796, 1004, 1043
SnaBI	TACGTA	1 cut(s)	1150
Sse9I	AATT	9 cut(s)	34, 123, 270, 659, 784, 813, 825, 894, 934
SsiI	CCGC	2 cut(s)	778, 1111
SspMI	CTAG	4 cut(s)	155, 215, 404, 1104
SstI	GAGCTC	2 cut(s)	60, 969
TaaI	ACNGT	3 cut(s)	433, 711, 797
TaiI	ACGT	5 cut(s)	67, 423, 471, 1152, 1156
TaqI	TCGA	3 cut(s)	67, 631, 885
TasI	AATT	9 cut(s)	34, 123, 270, 659, 784, 813, 825, 894, 934
TatI	WGTACW	1 cut(s)	522
TfiI	GAWTC	4 cut(s)	166, 596, 902, 976
Tru1I	TTAA	4 cut(s)	566, 812, 971, 1183
Tru9I	TTAA	4 cut(s)	566, 812, 971, 1183
TscAI	CASTG	3 cut(s)	438, 824, 989
TseFI	GTSAC	3 cut(s)	83, 236, 346
TseI	GCWGC	2 cut(s)	436, 560
Tsp45I	GTSAC	3 cut(s)	83, 236, 346
TspDTI	ATGAA	5 cut(s)	17, 546, 1043, 1062, 1163
TspGWI	ACGGA	2 cut(s)	339, 748
TspRI	CASTG	3 cut(s)	438, 824, 989
Van91I	CCANNNNNTGG	1 cut(s)	39
XapI	RAATTY	2 cut(s)	784, 825
XbaI	TCTAGA	1 cut(s)	214
XmiI	GTMKAC	1 cut(s)	67
XspI	CTAG	4 cut(s)	155, 215, 404, 1104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.