Rh5CG274900

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000885
Physical Location & Seq
Forward (+)
29714059 .. 29719552
5494 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG274900.1

Sequence Viewer

Length: 647 bp
ATGGGGTCTTGGATAACAAGGAGCGCAAAGGGCTTTCCATATTTATACGGAGTCTTGGATAATATTAAGCTATTAGCCACCACCCAGAAGATTCAGATGAGATATTCTATAGGTTCCTCCACTGGTACCAATGCCAAAGCATCTTCACAGCGAGCCTCAGCACGACACAAAACCACCATACCCTTGTTCTTTTTGGGAGCAGTATCTACTGTAAATTTGCGCGAAGAAGAACTCATTCAAGATGTTGTTAAAATTCTTGAATGCGCTTTTGAAGATTCTTCCTTACCGCAACATCATGAAAAAGCCCATAATTTGGAGAGCAGATACAAAATAAATAAGTGGAAGGCTAGTTTGCAGAACAAGGAAGACATCTCTAATCATAACAAAAGGAAAATGGTTAAGCTTAGCCTCACGGTTAATTATGATGGAGAATGGGCCAGTCCTGTTTACACTGGTGATAAAACAAAAGAAATAGTGATTTCAGATGACAGTACTCCTGATGAACTTCTGGATCAAATATATAGTTTTGTTGGGGTGGATCCAAAACAAAATAAGAGCAATACTGATGATAACCAAAGAATTTTTATTGGTAAGAGCCTTTCTTCCAGTGCGGGCTTCAAGAATCCACTGCGGAATGCTTGTGAAAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_3 LRR_8 NB-ARC TIR

Protein Analysis

215

Amino Acids

24.15

Weight (kDa)

8.93

Isoelectric Point (pI)

43.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 125
AccB1I GGYRCC 1 cut(s) 125
AccB7I CCANNNNNTGG 1 cut(s) 313
AccII CGCG 1 cut(s) 222
AciI CCGC 3 cut(s) 287, 611, 631
AclWI GGATC 3 cut(s) 519, 533, 546
AcsI RAATTY 3 cut(s) 214, 252, 579
AfaI GTAC 2 cut(s) 127, 493
AfiI CCNNNNNNNGG 1 cut(s) 313
AgsI TTSAA 4 cut(s) 239, 260, 272, 619
AluBI AGCT 2 cut(s) 70, 403
AluI AGCT 2 cut(s) 70, 403
AlwI GGATC 3 cut(s) 519, 533, 546
AoxI GGCC 1 cut(s) 435
ApoI RAATTY 3 cut(s) 214, 252, 579
Asp700I GAANNNNTTC 1 cut(s) 234
Asp718I GGTACC 1 cut(s) 125
AspLEI GCGC 3 cut(s) 26, 222, 266
AspS9I GGNCC 1 cut(s) 435
AsuHPI GGTGA 1 cut(s) 467
BamHI GGATCC 1 cut(s) 538
BanI GGYRCC 1 cut(s) 125
BbsI GAAGAC 1 cut(s) 372
BbvCI CCTCAGC 1 cut(s) 157
BccI CCATC 1 cut(s) 419
BfaI CTAG 1 cut(s) 348
BfmI CTRYAG 1 cut(s) 108
BlpI GCTNAGC 1 cut(s) 404
BmcAI AGTACT 1 cut(s) 493
BmgT120I GGNCC 1 cut(s) 435
BmiI GGNNCC 3 cut(s) 115, 127, 540
BmsI GCATC 1 cut(s) 149
BpiI GAAGAC 1 cut(s) 372
Bpu10I CCTNAGC 1 cut(s) 157
Bpu1102I GCTNAGC 1 cut(s) 404
Bsc4I CCNNNNNNNGG 1 cut(s) 313
Bse1I ACTGG 4 cut(s) 127, 438, 457, 606
BseLI CCNNNNNNNGG 1 cut(s) 313
BseMII CTCAG 1 cut(s) 171
BseNI ACTGG 4 cut(s) 127, 438, 457, 606
Bsh1236I CGCG 1 cut(s) 222
BshFI GGCC 1 cut(s) 437
BshNI GGYRCC 1 cut(s) 125
BslI CCNNNNNNNGG 1 cut(s) 313
BsmI GAATGC 2 cut(s) 266, 640
BsnI GGCC 1 cut(s) 437
Bsp143I GATC 2 cut(s) 511, 538
Bsp1720I GCTNAGC 1 cut(s) 404
BspACI CCGC 3 cut(s) 287, 611, 631
BspANI GGCC 1 cut(s) 437
BspCNI CTCAG 1 cut(s) 170
BspFNI CGCG 1 cut(s) 222
BspHI TCATGA 1 cut(s) 295
BspLI GGNNCC 3 cut(s) 115, 127, 540
BspPI GGATC 3 cut(s) 519, 533, 546
BspT107I GGYRCC 1 cut(s) 125
BsrI ACTGG 4 cut(s) 127, 438, 457, 606
BssMI GATC 2 cut(s) 511, 538
Bst4CI ACNGT 3 cut(s) 211, 415, 491
BstC8I GCNNGC 2 cut(s) 153, 613
BstDEI CTNAG 2 cut(s) 157, 404
BstFNI CGCG 1 cut(s) 222
BstHHI GCGC 3 cut(s) 26, 222, 266
BstKTI GATC 2 cut(s) 514, 541
BstMBI GATC 2 cut(s) 511, 538
BstMWI GCNNNNNNNGC 1 cut(s) 30
BstSFI CTRYAG 1 cut(s) 108
BstUI CGCG 1 cut(s) 222
BstV2I GAAGAC 1 cut(s) 372
BstX2I RGATCY 1 cut(s) 538
BstYI RGATCY 1 cut(s) 538
BsuRI GGCC 1 cut(s) 437
BtsI GCAGTG 1 cut(s) 626
BtsIMutI CAGTG 4 cut(s) 120, 450, 613, 626
Cac8I GCNNGC 2 cut(s) 153, 613
CciI TCATGA 1 cut(s) 295
CfoI GCGC 3 cut(s) 26, 222, 266
Cfr13I GGNCC 1 cut(s) 435
Csp6I GTAC 2 cut(s) 126, 492
CviAII CATG 1 cut(s) 296
CviQI GTAC 2 cut(s) 126, 492
DdeI CTNAG 2 cut(s) 157, 404
DpnI GATC 2 cut(s) 513, 540
DpnII GATC 2 cut(s) 511, 538
FaeI CATG 1 cut(s) 299
FatI CATG 1 cut(s) 295
FauI CCCGC 1 cut(s) 604
FspBI CTAG 1 cut(s) 348
GlaI GCGC 3 cut(s) 25, 221, 265
HaeIII GGCC 1 cut(s) 437
HhaI GCGC 3 cut(s) 26, 222, 266
Hin1II CATG 1 cut(s) 299
Hin6I GCGC 3 cut(s) 24, 220, 264
HinP1I GCGC 3 cut(s) 24, 220, 264
HindIII AAGCTT 1 cut(s) 401
HinfI GANTC 4 cut(s) 51, 91, 275, 622
HphI GGTGA 1 cut(s) 467
Hpy166II GTNNAC 1 cut(s) 448
Hpy188I TCNGA 2 cut(s) 96, 484
Hpy188III TCNNGA 6 cut(s) 239, 257, 296, 497, 509, 619
Hpy8I GTNNAC 1 cut(s) 448
HpyAV CCTTC 1 cut(s) 337
HpyCH4III ACNGT 3 cut(s) 211, 415, 491
HpyCH4V TGCA 1 cut(s) 355
HpyF10VI GCNNNNNNNGC 1 cut(s) 30
HpyF3I CTNAG 2 cut(s) 157, 404
Hsp92II CATG 1 cut(s) 299
HspAI GCGC 3 cut(s) 24, 220, 264
KpnI GGTACC 1 cut(s) 129
Kzo9I GATC 2 cut(s) 511, 538
LmnI GCTCC 2 cut(s) 21, 197
LpnPI CCDG 8 cut(s) 98, 108, 438, 451, 456, 494, 510, 619
LweI GCATC 1 cut(s) 149
MaeI CTAG 1 cut(s) 348
MalI GATC 2 cut(s) 513, 540
MboI GATC 2 cut(s) 511, 538
MboII GAAGA 8 cut(s) 100, 135, 236, 239, 270, 284, 377, 594
MflI RGATCY 1 cut(s) 538
MluCI AATT 5 cut(s) 214, 252, 310, 418, 579
MlyI GAGTC 1 cut(s) 60
MnlI CCTC 3 cut(s) 127, 166, 419
MroXI GAANNNNTTC 1 cut(s) 234
MseI TTAA 4 cut(s) 66, 249, 399, 417
Mva1269I GAATGC 2 cut(s) 266, 640
MvnI CGCG 1 cut(s) 222
MwoI GCNNNNNNNGC 1 cut(s) 30
NdeII GATC 2 cut(s) 511, 538
NlaIII CATG 1 cut(s) 299
NlaIV GGNNCC 3 cut(s) 115, 127, 540
PagI TCATGA 1 cut(s) 295
PctI GAATGC 2 cut(s) 266, 640
PdmI GAANNNNTTC 1 cut(s) 234
PfeI GAWTC 3 cut(s) 91, 275, 622
PflMI CCANNNNNTGG 1 cut(s) 313
PleI GAGTC 1 cut(s) 59
PpsI GAGTC 1 cut(s) 59
PspN4I GGNNCC 3 cut(s) 115, 127, 540
PspPI GGNCC 1 cut(s) 435
PsuI RGATCY 1 cut(s) 538
RsaI GTAC 2 cut(s) 127, 493
RsaNI GTAC 2 cut(s) 126, 492
SaqAI TTAA 4 cut(s) 66, 249, 399, 417
Sau3AI GATC 2 cut(s) 511, 538
Sau96I GGNCC 1 cut(s) 435
ScaI AGTACT 1 cut(s) 493
SchI GAGTC 1 cut(s) 60
SetI ASST 3 cut(s) 72, 115, 405
SfaNI GCATC 1 cut(s) 149
SfcI CTRYAG 1 cut(s) 108
Sse9I AATT 5 cut(s) 214, 252, 310, 418, 579
SsiI CCGC 3 cut(s) 287, 611, 631
SspI AATATT 1 cut(s) 64
SspMI CTAG 1 cut(s) 348
TaaI ACNGT 3 cut(s) 211, 415, 491
TasI AATT 5 cut(s) 214, 252, 310, 418, 579
TatI WGTACW 1 cut(s) 491
TfiI GAWTC 3 cut(s) 91, 275, 622
Tru1I TTAA 4 cut(s) 66, 249, 399, 417
Tru9I TTAA 4 cut(s) 66, 249, 399, 417
TscAI CASTG 4 cut(s) 127, 457, 613, 633
TspDTI ATGAA 2 cut(s) 312, 516
TspGWI ACGGA 1 cut(s) 63
TspRI CASTG 4 cut(s) 127, 457, 613, 633
Van91I CCANNNNNTGG 1 cut(s) 313
XapI RAATTY 3 cut(s) 214, 252, 579
XmnI GAANNNNTTC 1 cut(s) 234
XspI CTAG 1 cut(s) 348
ZrmI AGTACT 1 cut(s) 493
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.