Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000885

Physical Location & Seq

Genomic Coordinates Forward (+)

32214791 .. 32225817

Gene Structure 11027 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG266600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGACGTCCGATCATCTATGGACCGAACTCCGTGCCATCCATGACGAATTGAAGGAATTGCGGTTTCTGCGACTCCGGCGGCCTGCACTTTCAGTGACGTCTGATGATCTATCCACAAAACTCCGTGCTGTAGGGGACAGATGGAATAAATTCCGGAAATCCTACCACAATGAAATAGGGACCATCCTCATCCTGGACTGGAAATACGTGGTTAGGGTAGAACTTCTATATGGACTCGTTCTGGCTCTTGACTTAGCTGAGAATATTCATTGCGTTTCCGAAAGACAACGTCCACAGATCGAGTTAGACGTGACTGAGATACTTGGAGTCTACTCCAGAGCTCTAGAATATCTTCACACTGGAACTGCTGCTGCTGCTGACATTCCAATATCATCTTTCTCAGTGATGTCAACAGAAAGTGGAAAGAAGAACAAATTTTTAGGAGGCCATAATAACAGTCCAAAGAGAGGACAAAAAATACTTAATGATCAGAATCTGACTACTCTTCCTAACATGACCATGGATTGTAGAAGAAAATCAAAAACGTGGAGAGAAGCATCTGAGCCAGTGCTACTCGAAAAGAATCAGACTTTTGAGAGTCATGATGAAAATGATCAGGGAAGTAGAAATGATCGACAAAAAAATTCAGCTGCTTATAGTACATATATGATAGGTAAGTGTAATAATGTTAGATACTTCTTAGTCATTGTTTTTCAACATGACCACACTATTTTTTTTTTTTTAGTCATTTGTACGAACTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

254

Amino Acids

29.34

Weight (kDa)

8.54

Isoelectric Point (pI)

49.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000885)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g26890 FvH4_2g26890 FvH4_2g26890 FvH4_3g20951 FvH4_3g20960 FvH4_3g20962
malus_domestica	MD03G1083300.v1.1 MD03G1083600.v1.1 MD08G1022000.v1.1 MD10G1261100.v1.1
prunus_persica	Prupe.1G183900_v2.0.a1 Prupe.1G184000_v2.0.a1
pyrus_communis	pycom03g06620 pycom05g26220 pycom10g21740
rosa_chinensis	RchiOBHm_Chr3g0475491 RchiOBHm_Chr5g0034591 RchiOBHm_Chr5g0035231 RchiOBHm_Chr5g0035371 RchiOBHm_Chr5g0035701 RchiOBHm_Chr5g0035711
rosa_laevigata	RLG00000005586 RLG00000022983 RLG00000033611 RLG00000033626 RLG00000033630 RLG00000033640 RLG00000033646 RLG00000033651 RLG00000033652
rosa_multiflora	Rmu_co8204696.1_g000001 Rmu_co8330583.1_g000001 Rmu_sc0001493.1_g000069 Rmu_sc0001493.1_g000077 Rmu_sc0001493.1_g000082 Rmu_sc0002460.1_g000096 Rmu_sc0002482.1_g000010 Rmu_sc0002482.1_g000012 Rmu_sc0002935.1_g000002 Rmu_sc0017377.1_g000001 Rmu_sc0026350.1_g000001 Rmu_sc0041591.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042270 Rroxscaffold_1G00044790 Rroxscaffold_1G00044920 Rroxscaffold_1G00045020 Rroxscaffold_1G00045140 Rroxscaffold_1G00045740
rosa_rugosa	Rorug05G0146700 Rorug05G0146800 Rorug05G0150900 Rorug05G0151900
rosa_samantha	Rh5CG274900 Rh5CG276400 Rh5DG247800 Rh5DG266600 Rh5DG465900
rosa_wichuraiana	Rw0G005840 Rw5G021800 Rw5G021890 Rw5G022260 Rw5G022350 Rw5G022510 Rw5G022560 Rw5G023950 Rw5G023960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	8, 101
AccI	GTMKAC	1 cut(s)	330
AccIII	TCCGGA	1 cut(s)	153
AciI	CCGC	2 cut(s)	61, 79
AcsI	RAATTY	3 cut(s)	149, 434, 643
AcyI	GRCGYC	2 cut(s)	5, 98
AfaI	GTAC	2 cut(s)	661, 754
AfiI	CCNNNNNNNGG	2 cut(s)	193, 467
AgsI	TTSAA	2 cut(s)	52, 716
AjiI	CACGTC	1 cut(s)	310
AjnI	CCWGG	1 cut(s)	192
AluBI	AGCT	3 cut(s)	257, 341, 650
AluI	AGCT	3 cut(s)	257, 341, 650
Alw21I	GWGCWC	1 cut(s)	343
AlwNI	CAGNNNCTG	1 cut(s)	496
Aor13HI	TCCGGA	1 cut(s)	153
AoxI	GGCC	2 cut(s)	80, 445
ApeKI	GCWGC	4 cut(s)	368, 371, 374, 650
ApoI	RAATTY	3 cut(s)	149, 434, 643
Asp700I	GAANNNNTTC	2 cut(s)	149, 351
AspS9I	GGNCC	2 cut(s)	21, 180
AvaII	GGWCC	2 cut(s)	21, 180
BanII	GRGCYC	1 cut(s)	343
Bbv12I	GWGCWC	1 cut(s)	343
BbvI	GCAGC	4 cut(s)	355, 358, 361, 637
BccI	CCATC	3 cut(s)	44, 135, 191
BcgI	CGANNNNNNTGC	2 cut(s)	14, 48
BciT130I	CCWGG	1 cut(s)	194
BclI	TGATCA	2 cut(s)	487, 613
BfaI	CTAG	1 cut(s)	344
BfmI	CTRYAG	1 cut(s)	129
BisI	GCNGC	5 cut(s)	80, 369, 372, 375, 651
BlsI	GCNGC	5 cut(s)	81, 370, 373, 376, 652
Bme1390I	CCNGG	1 cut(s)	194
Bme18I	GGWCC	2 cut(s)	21, 180
BmgBI	CACGTC	1 cut(s)	310
BmgT120I	GGNCC	2 cut(s)	21, 180
BmiI	GGNNCC	1 cut(s)	181
BmrFI	CCNGG	1 cut(s)	194
BmsI	GCATC	1 cut(s)	566
BpmI	CTGGAG	1 cut(s)	319
BsaAI	YACGTR	1 cut(s)	208
BsaBI	GATNNNNATC	1 cut(s)	492
BsaHI	GRCGYC	2 cut(s)	5, 98
BsaJI	CCNNGG	1 cut(s)	519
BsaWI	WCCGGW	1 cut(s)	153
Bsc4I	CCNNNNNNNGG	2 cut(s)	193, 467
Bse1I	ACTGG	3 cut(s)	203, 364, 566
Bse3DI	GCAATG	1 cut(s)	268
Bse8I	GATNNNNATC	1 cut(s)	492
BseAI	TCCGGA	1 cut(s)	153
BseBI	CCWGG	1 cut(s)	194
BseDI	CCNNGG	1 cut(s)	519
BseGI	GGATG	3 cut(s)	36, 183, 189
BseJI	GATNNNNATC	1 cut(s)	492
BseLI	CCNNNNNNNGG	2 cut(s)	193, 467
BseMI	GCAATG	1 cut(s)	268
BseMII	CTCAG	4 cut(s)	249, 306, 414, 552
BseNI	ACTGG	3 cut(s)	203, 364, 566
BseXI	GCAGC	4 cut(s)	355, 358, 361, 637
BsgI	GTGCAG	1 cut(s)	69
BshFI	GGCC	2 cut(s)	82, 447
BsiHKAI	GWGCWC	1 cut(s)	343
BsiSI	CCGG	2 cut(s)	76, 154
BslFI	GGGAC	2 cut(s)	149, 193
BslI	CCNNNNNNNGG	2 cut(s)	193, 467
BsmFI	GGGAC	2 cut(s)	149, 193
BsnI	GGCC	2 cut(s)	82, 447
Bsp1286I	GDGCHC	1 cut(s)	343
Bsp13I	TCCGGA	1 cut(s)	153
Bsp143I	GATC	6 cut(s)	10, 106, 297, 487, 613, 631
Bsp19I	CCATGG	1 cut(s)	519
BspACI	CCGC	2 cut(s)	61, 79
BspANI	GGCC	2 cut(s)	82, 447
BspCNI	CTCAG	4 cut(s)	250, 307, 413, 553
BspEI	TCCGGA	1 cut(s)	153
BspHI	TCATGA	1 cut(s)	601
BspLI	GGNNCC	1 cut(s)	181
BsrDI	GCAATG	1 cut(s)	268
BsrI	ACTGG	3 cut(s)	203, 364, 566
BssECI	CCNNGG	1 cut(s)	519
BssMI	GATC	6 cut(s)	10, 106, 297, 487, 613, 631
BssNI	GRCGYC	2 cut(s)	5, 98
BssT1I	CCWWGG	1 cut(s)	519
Bst2UI	CCWGG	1 cut(s)	194
Bst4CI	ACNGT	1 cut(s)	458
Bst6I	CTCTTC	1 cut(s)	510
BstACI	GRCGYC	2 cut(s)	5, 98
BstBAI	YACGTR	1 cut(s)	208
BstC8I	GCNNGC	1 cut(s)	84
BstDEI	CTNAG	6 cut(s)	253, 258, 315, 400, 561, 700
BstDSI	CCRYGG	1 cut(s)	519
BstF5I	GGATG	3 cut(s)	36, 183, 189
BstKTI	GATC	6 cut(s)	13, 109, 300, 490, 616, 634
BstMBI	GATC	6 cut(s)	10, 106, 297, 487, 613, 631
BstMWI	GCNNNNNNNGC	3 cut(s)	67, 76, 374
BstNI	CCWGG	1 cut(s)	194
BstSCI	CCNGG	1 cut(s)	192
BstSFI	CTRYAG	1 cut(s)	129
BstV1I	GCAGC	4 cut(s)	355, 358, 361, 637
BsuRI	GGCC	2 cut(s)	82, 447
BtgI	CCRYGG	1 cut(s)	519
BtrI	CACGTC	1 cut(s)	310
BtsCI	GGATG	3 cut(s)	36, 183, 189
BtsIMutI	CAGTG	4 cut(s)	99, 357, 408, 573
Cac8I	GCNNGC	1 cut(s)	84
CaiI	CAGNNNCTG	1 cut(s)	496
CciI	TCATGA	1 cut(s)	601
Cfr13I	GGNCC	2 cut(s)	21, 180
Csp6I	GTAC	2 cut(s)	660, 753
CviAII	CATG	5 cut(s)	41, 514, 520, 602, 719
CviJI	RGCY	7 cut(s)	82, 245, 257, 341, 447, 565, 650
CviKI_1	RGCY	7 cut(s)	82, 245, 257, 341, 447, 565, 650
CviQI	GTAC	2 cut(s)	660, 753
DdeI	CTNAG	6 cut(s)	253, 258, 315, 400, 561, 700
DpnI	GATC	6 cut(s)	12, 108, 299, 489, 615, 633
DpnII	GATC	6 cut(s)	10, 106, 297, 487, 613, 631
Eam1104I	CTCTTC	1 cut(s)	510
EarI	CTCTTC	1 cut(s)	510
Ecl136II	GAGCTC	1 cut(s)	341
Eco130I	CCWWGG	1 cut(s)	519
Eco24I	GRGCYC	1 cut(s)	343
Eco47I	GGWCC	2 cut(s)	21, 180
Eco53kI	GAGCTC	1 cut(s)	341
EcoICRI	GAGCTC	1 cut(s)	341
EcoRII	CCWGG	1 cut(s)	192
EcoT14I	CCWWGG	1 cut(s)	519
EcoT38I	GRGCYC	1 cut(s)	343
ErhI	CCWWGG	1 cut(s)	519
FaeI	CATG	5 cut(s)	44, 517, 523, 605, 722
FaqI	GGGAC	2 cut(s)	149, 193
FatI	CATG	5 cut(s)	40, 513, 519, 601, 718
FbaI	TGATCA	2 cut(s)	487, 613
FblI	GTMKAC	1 cut(s)	330
Fnu4HI	GCNGC	5 cut(s)	80, 369, 372, 375, 651
FokI	GGATG	3 cut(s)	23, 170, 176
FriOI	GRGCYC	1 cut(s)	343
Fsp4HI	GCNGC	5 cut(s)	80, 369, 372, 375, 651
FspBI	CTAG	1 cut(s)	344
GluI	GCNGC	5 cut(s)	80, 369, 372, 375, 651
GsuI	CTGGAG	1 cut(s)	319
HaeIII	GGCC	2 cut(s)	82, 447
HapII	CCGG	2 cut(s)	76, 154
Hin1I	GRCGYC	2 cut(s)	5, 98
Hin1II	CATG	5 cut(s)	44, 517, 523, 605, 722
HincII	GTYRAC	1 cut(s)	411
HindII	GTYRAC	1 cut(s)	411
HinfI	GANTC	6 cut(s)	72, 234, 327, 493, 583, 598
HpaII	CCGG	2 cut(s)	76, 154
Hpy166II	GTNNAC	3 cut(s)	293, 331, 411
Hpy188I	TCNGA	7 cut(s)	10, 103, 280, 492, 498, 562, 588
Hpy188III	TCNNGA	5 cut(s)	154, 248, 336, 344, 602
Hpy8I	GTNNAC	3 cut(s)	293, 331, 411
HpyAV	CCTTC	1 cut(s)	46
HpyCH4III	ACNGT	1 cut(s)	458
HpyCH4IV	ACGT	6 cut(s)	5, 98, 207, 289, 309, 545
HpyCH4V	TGCA	1 cut(s)	86
HpyF10VI	GCNNNNNNNGC	3 cut(s)	67, 76, 374
HpyF3I	CTNAG	6 cut(s)	253, 258, 315, 400, 561, 700
HpySE526I	ACGT	6 cut(s)	5, 98, 207, 289, 309, 545
Hsp92I	GRCGYC	2 cut(s)	5, 98
Hsp92II	CATG	5 cut(s)	44, 517, 523, 605, 722
Kpn2I	TCCGGA	1 cut(s)	153
Ksp22I	TGATCA	2 cut(s)	487, 613
Kzo9I	GATC	6 cut(s)	10, 106, 297, 487, 613, 631
Lsp1109I	GCAGC	4 cut(s)	355, 358, 361, 637
LweI	GCATC	1 cut(s)	566
MaeI	CTAG	1 cut(s)	344
MaeII	ACGT	6 cut(s)	5, 98, 207, 289, 309, 545
MaeIII	GTNAC	2 cut(s)	94, 310
MalI	GATC	6 cut(s)	12, 108, 299, 489, 615, 633
MboI	GATC	6 cut(s)	10, 106, 297, 487, 613, 631
MboII	GAAGA	4 cut(s)	344, 439, 497, 543
MhlI	GDGCHC	1 cut(s)	343
MluCI	AATT	5 cut(s)	47, 56, 149, 434, 643
MlyI	GAGTC	4 cut(s)	66, 228, 336, 607
MnlI	CCTC	3 cut(s)	197, 437, 461
MroI	TCCGGA	1 cut(s)	153
MroXI	GAANNNNTTC	2 cut(s)	149, 351
MseI	TTAA	1 cut(s)	483
MslI	CAYNNNNRTG	1 cut(s)	518
MspA1I	CMGCKG	1 cut(s)	650
MspI	CCGG	2 cut(s)	76, 154
MspR9I	CCNGG	1 cut(s)	194
MvaI	CCWGG	1 cut(s)	194
MwoI	GCNNNNNNNGC	3 cut(s)	67, 76, 374
NcoI	CCATGG	1 cut(s)	519
NdeII	GATC	6 cut(s)	10, 106, 297, 487, 613, 631
NlaIII	CATG	5 cut(s)	44, 517, 523, 605, 722
NlaIV	GGNNCC	1 cut(s)	181
NmuCI	GTSAC	2 cut(s)	94, 310
PagI	TCATGA	1 cut(s)	601
PcsI	WCGNNNNNNNCGW	1 cut(s)	306
PdmI	GAANNNNTTC	2 cut(s)	149, 351
PfeI	GAWTC	2 cut(s)	493, 583
PflFI	GACNNNGTC	1 cut(s)	288
PfoI	TCCNGGA	1 cut(s)	192
PkrI	GCNGC	5 cut(s)	81, 370, 373, 376, 652
PleI	GAGTC	4 cut(s)	66, 228, 335, 606
PpsI	GAGTC	4 cut(s)	66, 228, 335, 606
Ppu21I	YACGTR	1 cut(s)	208
Psp124BI	GAGCTC	1 cut(s)	343
Psp6I	CCWGG	1 cut(s)	192
PspGI	CCWGG	1 cut(s)	192
PspN4I	GGNNCC	1 cut(s)	181
PspPI	GGNCC	2 cut(s)	21, 180
PstNI	CAGNNNCTG	1 cut(s)	496
PsyI	GACNNNGTC	1 cut(s)	288
PvuII	CAGCTG	1 cut(s)	650
RsaI	GTAC	2 cut(s)	661, 754
RsaNI	GTAC	2 cut(s)	660, 753
RseI	CAYNNNNRTG	1 cut(s)	518
SacI	GAGCTC	1 cut(s)	343
SaqAI	TTAA	1 cut(s)	483
SatI	GCNGC	5 cut(s)	80, 369, 372, 375, 651
Sau3AI	GATC	6 cut(s)	10, 106, 297, 487, 613, 631
Sau96I	GGNCC	2 cut(s)	21, 180
SchI	GAGTC	4 cut(s)	66, 228, 336, 607
ScrFI	CCNGG	1 cut(s)	194
SduI	GDGCHC	1 cut(s)	343
SfaNI	GCATC	1 cut(s)	566
SfcI	CTRYAG	1 cut(s)	129
SinI	GGWCC	2 cut(s)	21, 180
SmiMI	CAYNNNNRTG	1 cut(s)	518
Sse9I	AATT	5 cut(s)	47, 56, 149, 434, 643
SsiI	CCGC	2 cut(s)	61, 79
SspI	AATATT	1 cut(s)	265
SspMI	CTAG	1 cut(s)	344
SstI	GAGCTC	1 cut(s)	343
StyD4I	CCNGG	1 cut(s)	192
StyI	CCWWGG	1 cut(s)	519
TaaI	ACNGT	1 cut(s)	458
TaiI	ACGT	6 cut(s)	8, 101, 210, 292, 312, 548
TaqI	TCGA	3 cut(s)	300, 576, 634
TaqII	GACCGA	1 cut(s)	38
TasI	AATT	5 cut(s)	47, 56, 149, 434, 643
TatI	WGTACW	1 cut(s)	659
TauI	GCSGC	1 cut(s)	82
TfiI	GAWTC	2 cut(s)	493, 583
Tru1I	TTAA	1 cut(s)	483
Tru9I	TTAA	1 cut(s)	483
TscAI	CASTG	4 cut(s)	99, 364, 408, 573
TseFI	GTSAC	2 cut(s)	94, 310
TseI	GCWGC	4 cut(s)	368, 371, 374, 650
Tsp45I	GTSAC	2 cut(s)	94, 310
TspDTI	ATGAA	3 cut(s)	186, 257, 621
TspGWI	ACGGA	2 cut(s)	20, 113
TspRI	CASTG	4 cut(s)	99, 364, 408, 573
Tth111I	GACNNNGTC	1 cut(s)	288
VpaK11BI	GGWCC	2 cut(s)	21, 180
XapI	RAATTY	3 cut(s)	149, 434, 643
XbaI	TCTAGA	1 cut(s)	343
XcmI	CCANNNNNNNNNTGG	1 cut(s)	190
XmiI	GTMKAC	1 cut(s)	330
XmnI	GAANNNNTTC	2 cut(s)	149, 351
XspI	CTAG	1 cut(s)	344
ZraI	GACGTC	2 cut(s)	6, 99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.