TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Ion_trans | PF00520 | 115 - 340 | 4e-10 | Ion transport protein |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 467, 2126 |
| AarI | CACCTGC | 1 cut(s) | 391 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 2279 |
| Acc36I | ACCTGC | 2 cut(s) | 391, 1872 |
| AccI | GTMKAC | 1 cut(s) | 1129 |
| AccII | CGCG | 3 cut(s) | 329, 1477, 1557 |
| AciI | CCGC | 8 cut(s) | 327, 347, 398, 702, 1728, 2078, 2370, 2670 |
| AclI | AACGTT | 1 cut(s) | 1748 |
| AclWI | GGATC | 8 cut(s) | 829, 1250, 1553, 1716, 1724, 1830, 2194, 2380 |
| AcsI | RAATTY | 8 cut(s) | 829, 842, 874, 1187, 1214, 1641, 2383, 2401 |
| AcuI | CTGAAG | 1 cut(s) | 1847 |
| AcvI | CACGTG | 2 cut(s) | 1688, 2189 |
| AcyI | GRCGYC | 1 cut(s) | 1951 |
| AfaI | GTAC | 9 cut(s) | 584, 712, 892, 990, 1418, 1544, 1983, 2051, 2112 |
| AfeI | AGCGCT | 1 cut(s) | 1538 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 184, 295, 403, 1458, 1870 |
| AflIII | ACRYGT | 2 cut(s) | 1475, 2010 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1479 |
| AhlI | ACTAGT | 1 cut(s) | 2515 |
| AjnI | CCWGG | 1 cut(s) | 2556 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1491, 1523 |
| AluBI | AGCT | 7 cut(s) | 335, 1180, 1380, 1610, 2064, 2241, 2603 |
| AluI | AGCT | 7 cut(s) | 335, 1180, 1380, 1610, 2064, 2241, 2603 |
| Alw26I | GTCTC | 7 cut(s) | 54, 185, 337, 1353, 1392, 2465, 2525 |
| AlwI | GGATC | 8 cut(s) | 829, 1250, 1553, 1716, 1724, 1830, 2194, 2380 |
| Ama87I | CYCGRG | 3 cut(s) | 1389, 2036, 2507 |
| Aor51HI | AGCGCT | 1 cut(s) | 1538 |
| AoxI | GGCC | 5 cut(s) | 286, 435, 865, 1968, 2337 |
| ApaI | GGGCCC | 1 cut(s) | 290 |
| ApeKI | GCWGC | 4 cut(s) | 608, 1464, 2145, 2603 |
| ApoI | RAATTY | 8 cut(s) | 829, 842, 874, 1187, 1214, 1641, 2383, 2401 |
| AseI | ATTAAT | 1 cut(s) | 1083 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1506, 2232 |
| AspLEI | GCGC | 2 cut(s) | 1539, 2665 |
| AspS9I | GGNCC | 6 cut(s) | 286, 287, 435, 655, 865, 1969 |
| AsuHPI | GGTGA | 4 cut(s) | 284, 548, 2237, 2432 |
| AsuNHI | GCTAGC | 1 cut(s) | 593 |
| AvaI | CYCGRG | 3 cut(s) | 1389, 2036, 2507 |
| AvaII | GGWCC | 1 cut(s) | 655 |
| AxyI | CCTNAGG | 2 cut(s) | 497, 2204 |
| BaeGI | GKGCMC | 1 cut(s) | 290 |
| BanII | GRGCYC | 1 cut(s) | 290 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1974, 2006 |
| BbrPI | CACGTG | 2 cut(s) | 1688, 2189 |
| BbsI | GAAGAC | 1 cut(s) | 475 |
| BbvCI | CCTCAGC | 1 cut(s) | 1740 |
| BbvI | GCAGC | 4 cut(s) | 595, 1476, 2157, 2590 |
| BccI | CCATC | 5 cut(s) | 401, 1370, 1962, 2040, 2417 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 2017, 2051, 2585, 2619 |
| BciT130I | CCWGG | 1 cut(s) | 2558 |
| BciVI | GTATCC | 1 cut(s) | 2371 |
| BclI | TGATCA | 2 cut(s) | 1245, 2575 |
| BcoDI | GTCTC | 7 cut(s) | 54, 185, 337, 1353, 1392, 2465, 2525 |
| BcuI | ACTAGT | 1 cut(s) | 2515 |
| BfaI | CTAG | 6 cut(s) | 594, 1181, 1868, 2142, 2292, 2516 |
| BfmI | CTRYAG | 3 cut(s) | 204, 750, 1696 |
| BfoI | RGCGCY | 2 cut(s) | 1540, 2666 |
| BfuAI | ACCTGC | 2 cut(s) | 391, 1872 |
| BfuI | GTATCC | 1 cut(s) | 2371 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1959 |
| BisI | GCNGC | 5 cut(s) | 609, 1465, 1728, 2146, 2604 |
| BlsI | GCNGC | 5 cut(s) | 610, 1466, 1729, 2147, 2605 |
| BmcAI | AGTACT | 1 cut(s) | 712 |
| Bme1390I | CCNGG | 1 cut(s) | 2558 |
| Bme18I | GGWCC | 1 cut(s) | 655 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1479 |
| BmeT110I | CYCGRG | 3 cut(s) | 1389, 2036, 2507 |
| BmgT120I | GGNCC | 6 cut(s) | 286, 287, 435, 655, 865, 1969 |
| BmiI | GGNNCC | 8 cut(s) | 288, 289, 436, 656, 866, 1012, 1450, 2167 |
| BmrFI | CCNGG | 1 cut(s) | 2558 |
| BmsI | GCATC | 5 cut(s) | 671, 1423, 1726, 1876, 2255 |
| BmtI | GCTAGC | 1 cut(s) | 597 |
| BpiI | GAAGAC | 1 cut(s) | 475 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1740 |
| BpuEI | CTTGAG | 2 cut(s) | 1631, 2318 |
| BsaAI | YACGTR | 2 cut(s) | 1688, 2189 |
| BsaHI | GRCGYC | 1 cut(s) | 1951 |
| BsaI | GGTCTC | 3 cut(s) | 337, 1392, 2525 |
| BsaJI | CCNNGG | 6 cut(s) | 178, 1192, 1457, 2169, 2340, 2557 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1491, 1521 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 184, 295, 403, 1458, 1870 |
| Bse1I | ACTGG | 4 cut(s) | 267, 1626, 1799, 2042 |
| Bse21I | CCTNAGG | 2 cut(s) | 497, 2204 |
| Bse3DI | GCAATG | 2 cut(s) | 588, 2155 |
| BseBI | CCWGG | 1 cut(s) | 2558 |
| BseDI | CCNNGG | 6 cut(s) | 178, 1192, 1457, 2169, 2340, 2557 |
| BseGI | GGATG | 6 cut(s) | 76, 393, 686, 1119, 1213, 1891 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 184, 295, 403, 1458, 1870 |
| BseMI | GCAATG | 2 cut(s) | 588, 2155 |
| BseMII | CTCAG | 7 cut(s) | 232, 327, 488, 1731, 2172, 2251, 2420 |
| BseNI | ACTGG | 4 cut(s) | 267, 1626, 1799, 2042 |
| BseRI | GAGGAG | 1 cut(s) | 2483 |
| BseSI | GKGCMC | 1 cut(s) | 290 |
| BseXI | GCAGC | 4 cut(s) | 595, 1476, 2157, 2590 |
| BseYI | CCCAGC | 1 cut(s) | 2241 |
| BsgI | GTGCAG | 2 cut(s) | 1835, 2376 |
| Bsh1236I | CGCG | 3 cut(s) | 329, 1477, 1557 |
| BshFI | GGCC | 5 cut(s) | 288, 437, 867, 1970, 2339 |
| BsiHKCI | CYCGRG | 3 cut(s) | 1389, 2036, 2507 |
| BsiSI | CCGG | 2 cut(s) | 1395, 2479 |
| BslFI | GGGAC | 8 cut(s) | 121, 133, 148, 169, 232, 668, 2574, 2595 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 184, 295, 403, 1458, 1870 |
| BsmAI | GTCTC | 7 cut(s) | 54, 185, 337, 1353, 1392, 2465, 2525 |
| BsmFI | GGGAC | 8 cut(s) | 121, 133, 148, 169, 232, 668, 2574, 2595 |
| BsnI | GGCC | 5 cut(s) | 288, 437, 867, 1970, 2339 |
| Bso31I | GGTCTC | 3 cut(s) | 337, 1392, 2525 |
| BsoBI | CYCGRG | 3 cut(s) | 1389, 2036, 2507 |
| Bsp120I | GGGCCC | 1 cut(s) | 286 |
| Bsp1286I | GDGCHC | 1 cut(s) | 290 |
| Bsp1407I | TGTACA | 3 cut(s) | 582, 988, 2049 |
| Bsp68I | TCGCGA | 1 cut(s) | 1557 |
| BspACI | CCGC | 8 cut(s) | 327, 347, 398, 702, 1728, 2078, 2370, 2670 |
| BspANI | GGCC | 5 cut(s) | 288, 437, 867, 1970, 2339 |
| BspCNI | CTCAG | 7 cut(s) | 231, 328, 489, 1732, 2173, 2250, 2419 |
| BspFNI | CGCG | 3 cut(s) | 329, 1477, 1557 |
| BspHI | TCATGA | 1 cut(s) | 2494 |
| BspLI | GGNNCC | 8 cut(s) | 288, 289, 436, 656, 866, 1012, 1450, 2167 |
| BspMI | ACCTGC | 2 cut(s) | 391, 1872 |
| BspOI | GCTAGC | 1 cut(s) | 597 |
| BspPI | GGATC | 8 cut(s) | 829, 1250, 1553, 1716, 1724, 1830, 2194, 2380 |
| BspTNI | GGTCTC | 3 cut(s) | 337, 1392, 2525 |
| BsrDI | GCAATG | 2 cut(s) | 588, 2155 |
| BsrGI | TGTACA | 3 cut(s) | 582, 988, 2049 |
| BsrI | ACTGG | 4 cut(s) | 267, 1626, 1799, 2042 |
| BssECI | CCNNGG | 6 cut(s) | 178, 1192, 1457, 2169, 2340, 2557 |
| BssNI | GRCGYC | 1 cut(s) | 1951 |
| BssT1I | CCWWGG | 3 cut(s) | 178, 1192, 1457 |
| Bst2UI | CCWGG | 1 cut(s) | 2558 |
| Bst4CI | ACNGT | 5 cut(s) | 205, 544, 710, 1005, 1226 |
| Bst6I | CTCTTC | 5 cut(s) | 276, 335, 1056, 1569, 1796 |
| BstACI | GRCGYC | 1 cut(s) | 1951 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1736 |
| BstAUI | TGTACA | 3 cut(s) | 582, 988, 2049 |
| BstBAI | YACGTR | 2 cut(s) | 1688, 2189 |
| BstC8I | GCNNGC | 4 cut(s) | 595, 686, 959, 1850 |
| BstDEI | CTNAG | 9 cut(s) | 218, 336, 497, 1050, 1740, 2181, 2204, 2237, 2406 |
| BstF5I | GGATG | 6 cut(s) | 76, 393, 686, 1119, 1213, 1891 |
| BstFNI | CGCG | 3 cut(s) | 329, 1477, 1557 |
| BstH2I | RGCGCY | 2 cut(s) | 1540, 2666 |
| BstHHI | GCGC | 2 cut(s) | 1539, 2665 |
| BstMAI | GTCTC | 7 cut(s) | 54, 185, 337, 1353, 1392, 2465, 2525 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 1736, 1959, 2447, 2612 |
| BstNI | CCWGG | 1 cut(s) | 2558 |
| BstNSI | RCATGY | 3 cut(s) | 666, 688, 2014 |
| BstSCI | CCNGG | 1 cut(s) | 2556 |
| BstSFI | CTRYAG | 3 cut(s) | 204, 750, 1696 |
| BstSLI | GKGCMC | 1 cut(s) | 290 |
| BstUI | CGCG | 3 cut(s) | 329, 1477, 1557 |
| BstV1I | GCAGC | 4 cut(s) | 595, 1476, 2157, 2590 |
| BstV2I | GAAGAC | 1 cut(s) | 475 |
| BstX2I | RGATCY | 4 cut(s) | 821, 1255, 1822, 2199 |
| BstYI | RGATCY | 4 cut(s) | 821, 1255, 1822, 2199 |
| Bsu36I | CCTNAGG | 2 cut(s) | 497, 2204 |
| BsuI | GTATCC | 1 cut(s) | 2371 |
| BsuRI | GGCC | 5 cut(s) | 288, 437, 867, 1970, 2339 |
| BtgZI | GCGATG | 1 cut(s) | 1538 |
| BtsCI | GGATG | 6 cut(s) | 76, 393, 686, 1119, 1213, 1891 |
| BtsI | GCAGTG | 3 cut(s) | 1259, 1620, 2384 |
| BtsIMutI | CAGTG | 7 cut(s) | 274, 1259, 1620, 1633, 2049, 2178, 2384 |
| BtuMI | TCGCGA | 1 cut(s) | 1557 |
| BveI | ACCTGC | 2 cut(s) | 391, 1872 |
| Cac8I | GCNNGC | 4 cut(s) | 595, 686, 959, 1850 |
| CciI | TCATGA | 1 cut(s) | 2494 |
| CfoI | GCGC | 2 cut(s) | 1539, 2665 |
| Cfr13I | GGNCC | 6 cut(s) | 286, 287, 435, 655, 865, 1969 |
| CseI | GACGC | 2 cut(s) | 1483, 1959 |
| Csp6I | GTAC | 9 cut(s) | 583, 711, 891, 989, 1417, 1543, 1982, 2050, 2111 |
| CviQI | GTAC | 9 cut(s) | 583, 711, 891, 989, 1417, 1543, 1982, 2050, 2111 |
| DdeI | CTNAG | 9 cut(s) | 218, 336, 497, 1050, 1740, 2181, 2204, 2237, 2406 |
| DraI | TTTAAA | 1 cut(s) | 1330 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2279 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1479 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2279 |
| Eam1104I | CTCTTC | 5 cut(s) | 276, 335, 1056, 1569, 1796 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1479 |
| EarI | CTCTTC | 5 cut(s) | 276, 335, 1056, 1569, 1796 |
| Eco130I | CCWWGG | 3 cut(s) | 178, 1192, 1457 |
| Eco24I | GRGCYC | 1 cut(s) | 290 |
| Eco31I | GGTCTC | 3 cut(s) | 337, 1392, 2525 |
| Eco32I | GATATC | 2 cut(s) | 1786, 1933 |
| Eco47I | GGWCC | 1 cut(s) | 655 |
| Eco47III | AGCGCT | 1 cut(s) | 1538 |
| Eco57I | CTGAAG | 1 cut(s) | 1847 |
| Eco72I | CACGTG | 2 cut(s) | 1688, 2189 |
| Eco81I | CCTNAGG | 2 cut(s) | 497, 2204 |
| Eco88I | CYCGRG | 3 cut(s) | 1389, 2036, 2507 |
| EcoO109I | RGGNCCY | 5 cut(s) | 286, 287, 435, 865, 1969 |
| EcoRI | GAATTC | 3 cut(s) | 1187, 1214, 2401 |
| EcoRII | CCWGG | 1 cut(s) | 2556 |
| EcoRV | GATATC | 2 cut(s) | 1786, 1933 |
| EcoT14I | CCWWGG | 3 cut(s) | 178, 1192, 1457 |
| EcoT22I | ATGCAT | 3 cut(s) | 686, 1285, 2004 |
| EcoT38I | GRGCYC | 1 cut(s) | 290 |
| ErhI | CCWWGG | 3 cut(s) | 178, 1192, 1457 |
| FaqI | GGGAC | 8 cut(s) | 121, 133, 148, 169, 232, 668, 2574, 2595 |
| FauI | CCCGC | 3 cut(s) | 334, 405, 2071 |
| FauNDI | CATATG | 1 cut(s) | 917 |
| FbaI | TGATCA | 2 cut(s) | 1245, 2575 |
| FblI | GTMKAC | 1 cut(s) | 1129 |
| Fnu4HI | GCNGC | 5 cut(s) | 609, 1465, 1728, 2146, 2604 |
| FokI | GGATG | 6 cut(s) | 83, 380, 693, 1126, 1220, 1898 |
| FriOI | GRGCYC | 1 cut(s) | 290 |
| Fsp4HI | GCNGC | 5 cut(s) | 609, 1465, 1728, 2146, 2604 |
| FspBI | CTAG | 6 cut(s) | 594, 1181, 1868, 2142, 2292, 2516 |
| GlaI | GCGC | 2 cut(s) | 1538, 2664 |
| GluI | GCNGC | 5 cut(s) | 609, 1465, 1728, 2146, 2604 |
| GsaI | CCCAGC | 1 cut(s) | 2245 |
| HaeII | RGCGCY | 2 cut(s) | 1540, 2666 |
| HaeIII | GGCC | 5 cut(s) | 288, 437, 867, 1970, 2339 |
| HapII | CCGG | 2 cut(s) | 1395, 2479 |
| HgaI | GACGC | 2 cut(s) | 1483, 1959 |
| HhaI | GCGC | 2 cut(s) | 1539, 2665 |
| Hin1I | GRCGYC | 1 cut(s) | 1951 |
| Hin6I | GCGC | 2 cut(s) | 1537, 2663 |
| HinP1I | GCGC | 2 cut(s) | 1537, 2663 |
| HincII | GTYRAC | 1 cut(s) | 373 |
| HindII | GTYRAC | 1 cut(s) | 373 |
| HinfI | GANTC | 6 cut(s) | 314, 755, 895, 1064, 2183, 2329 |
| HpaII | CCGG | 2 cut(s) | 1395, 2479 |
| HphI | GGTGA | 4 cut(s) | 284, 548, 2237, 2432 |
| Hpy166II | GTNNAC | 6 cut(s) | 21, 373, 1130, 1620, 2050, 2228 |
| Hpy8I | GTNNAC | 6 cut(s) | 21, 373, 1130, 1620, 2050, 2228 |
| HpyAV | CCTTC | 6 cut(s) | 523, 584, 622, 1464, 1960, 2204 |
| HpyCH4III | ACNGT | 5 cut(s) | 205, 544, 710, 1005, 1226 |
| HpyCH4IV | ACGT | 5 cut(s) | 471, 1687, 1748, 2067, 2188 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 1736, 1959, 2447, 2612 |
| HpyF3I | CTNAG | 9 cut(s) | 218, 336, 497, 1050, 1740, 2181, 2204, 2237, 2406 |
| HpySE526I | ACGT | 5 cut(s) | 471, 1687, 1748, 2067, 2188 |
| Hsp92I | GRCGYC | 1 cut(s) | 1951 |
| HspAI | GCGC | 2 cut(s) | 1537, 2663 |
| Ksp22I | TGATCA | 2 cut(s) | 1245, 2575 |
| LmnI | GCTCC | 2 cut(s) | 1461, 1607 |
| Lsp1109I | GCAGC | 4 cut(s) | 595, 1476, 2157, 2590 |
| LweI | GCATC | 5 cut(s) | 671, 1423, 1726, 1876, 2255 |
| MaeI | CTAG | 6 cut(s) | 594, 1181, 1868, 2142, 2292, 2516 |
| MaeII | ACGT | 5 cut(s) | 471, 1687, 1748, 2067, 2188 |
| MaeIII | GTNAC | 6 cut(s) | 272, 536, 704, 1628, 1688, 2184 |
| MfeI | CAATTG | 2 cut(s) | 672, 2392 |
| MflI | RGATCY | 4 cut(s) | 821, 1255, 1822, 2199 |
| MhlI | GDGCHC | 1 cut(s) | 290 |
| MluI | ACGCGT | 1 cut(s) | 1475 |
| MlyI | GAGTC | 3 cut(s) | 308, 1073, 2192 |
| MmeI | TCCRAC | 6 cut(s) | 342, 526, 1477, 1653, 1949, 1995 |
| Mph1103I | ATGCAT | 3 cut(s) | 686, 1285, 2004 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1506, 2232 |
| MspA1I | CMGCKG | 3 cut(s) | 335, 349, 2241 |
| MspI | CCGG | 2 cut(s) | 1395, 2479 |
| MspR9I | CCNGG | 1 cut(s) | 2558 |
| MunI | CAATTG | 2 cut(s) | 672, 2392 |
| MvaI | CCWGG | 1 cut(s) | 2558 |
| MvnI | CGCG | 3 cut(s) | 329, 1477, 1557 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 1736, 1959, 2447, 2612 |
| NdeI | CATATG | 1 cut(s) | 917 |
| NheI | GCTAGC | 1 cut(s) | 593 |
| NlaIV | GGNNCC | 8 cut(s) | 288, 289, 436, 656, 866, 1012, 1450, 2167 |
| NmeAIII | GCCGAG | 1 cut(s) | 2365 |
| NmuCI | GTSAC | 6 cut(s) | 272, 536, 704, 1628, 1688, 2184 |
| NruI | TCGCGA | 1 cut(s) | 1557 |
| NsiI | ATGCAT | 3 cut(s) | 686, 1285, 2004 |
| NspI | RCATGY | 3 cut(s) | 666, 688, 2014 |
| PaeI | GCATGC | 1 cut(s) | 688 |
| PaeR7I | CTCGAG | 3 cut(s) | 1389, 2036, 2507 |
| PagI | TCATGA | 1 cut(s) | 2494 |
| PaqCI | CACCTGC | 1 cut(s) | 391 |
| PciI | ACATGT | 1 cut(s) | 2010 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1754 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1506, 2232 |
| PfeI | GAWTC | 3 cut(s) | 755, 895, 2329 |
| PkrI | GCNGC | 5 cut(s) | 610, 1466, 1729, 2147, 2605 |
| PleI | GAGTC | 3 cut(s) | 308, 1072, 2191 |
| PmaCI | CACGTG | 2 cut(s) | 1688, 2189 |
| PmlI | CACGTG | 2 cut(s) | 1688, 2189 |
| PpsI | GAGTC | 3 cut(s) | 308, 1072, 2191 |
| Ppu21I | YACGTR | 2 cut(s) | 1688, 2189 |
| PscI | ACATGT | 1 cut(s) | 2010 |
| PshBI | ATTAAT | 1 cut(s) | 1083 |
| PsiI | TTATAA | 2 cut(s) | 467, 2126 |
| Psp1406I | AACGTT | 1 cut(s) | 1748 |
| Psp6I | CCWGG | 1 cut(s) | 2556 |
| PspCI | CACGTG | 2 cut(s) | 1688, 2189 |
| PspFI | CCCAGC | 1 cut(s) | 2241 |
| PspGI | CCWGG | 1 cut(s) | 2556 |
| PspN4I | GGNNCC | 8 cut(s) | 288, 289, 436, 656, 866, 1012, 1450, 2167 |
| PspOMI | GGGCCC | 1 cut(s) | 286 |
| PspPI | GGNCC | 6 cut(s) | 286, 287, 435, 655, 865, 1969 |
| PspXI | VCTCGAGB | 1 cut(s) | 1389 |
| PsuI | RGATCY | 4 cut(s) | 821, 1255, 1822, 2199 |
| PvuII | CAGCTG | 2 cut(s) | 335, 2241 |
| RruI | TCGCGA | 1 cut(s) | 1557 |
| RsaI | GTAC | 9 cut(s) | 584, 712, 892, 990, 1418, 1544, 1983, 2051, 2112 |
| RsaNI | GTAC | 9 cut(s) | 583, 711, 891, 989, 1417, 1543, 1982, 2050, 2111 |
| SatI | GCNGC | 5 cut(s) | 609, 1465, 1728, 2146, 2604 |
| Sau96I | GGNCC | 6 cut(s) | 286, 287, 435, 655, 865, 1969 |
| ScaI | AGTACT | 1 cut(s) | 712 |
| SchI | GAGTC | 3 cut(s) | 308, 1073, 2192 |
| ScrFI | CCNGG | 1 cut(s) | 2558 |
| SduI | GDGCHC | 1 cut(s) | 290 |
| SfaNI | GCATC | 5 cut(s) | 671, 1423, 1726, 1876, 2255 |
| SfcI | CTRYAG | 3 cut(s) | 204, 750, 1696 |
| Sfr274I | CTCGAG | 3 cut(s) | 1389, 2036, 2507 |
| SinI | GGWCC | 1 cut(s) | 655 |
| SlaI | CTCGAG | 3 cut(s) | 1389, 2036, 2507 |
| SmlI | CTYRAG | 5 cut(s) | 1389, 1646, 2036, 2333, 2507 |
| SmoI | CTYRAG | 5 cut(s) | 1389, 1646, 2036, 2333, 2507 |
| SpeI | ACTAGT | 1 cut(s) | 2515 |
| SphI | GCATGC | 1 cut(s) | 688 |
| SsiI | CCGC | 8 cut(s) | 327, 347, 398, 702, 1728, 2078, 2370, 2670 |
| SspI | AATATT | 3 cut(s) | 491, 1524, 2464 |
| SspMI | CTAG | 6 cut(s) | 594, 1181, 1868, 2142, 2292, 2516 |
| StyD4I | CCNGG | 1 cut(s) | 2556 |
| StyI | CCWWGG | 3 cut(s) | 178, 1192, 1457 |
| TaaI | ACNGT | 5 cut(s) | 205, 544, 710, 1005, 1226 |
| TaiI | ACGT | 5 cut(s) | 474, 1690, 1751, 2070, 2191 |
| TaqI | TCGA | 9 cut(s) | 667, 1390, 1483, 1638, 1719, 2037, 2096, 2319, 2508 |
| TaqII | GACCGA | 2 cut(s) | 1251, 1416 |
| TatI | WGTACW | 4 cut(s) | 582, 710, 988, 2049 |
| TauI | GCSGC | 1 cut(s) | 1730 |
| TfiI | GAWTC | 3 cut(s) | 755, 895, 2329 |
| TscAI | CASTG | 7 cut(s) | 274, 1266, 1627, 1633, 2049, 2185, 2384 |
| TseFI | GTSAC | 6 cut(s) | 272, 536, 704, 1628, 1688, 2184 |
| TseI | GCWGC | 4 cut(s) | 608, 1464, 2145, 2603 |
| Tsp45I | GTSAC | 6 cut(s) | 272, 536, 704, 1628, 1688, 2184 |
| TspGWI | ACGGA | 3 cut(s) | 1060, 1721, 2578 |
| TspRI | CASTG | 7 cut(s) | 274, 1266, 1627, 1633, 2049, 2185, 2384 |
| VpaK11BI | GGWCC | 1 cut(s) | 655 |
| VspI | ATTAAT | 1 cut(s) | 1083 |
| XapI | RAATTY | 8 cut(s) | 829, 842, 874, 1187, 1214, 1641, 2383, 2401 |
| XceI | RCATGY | 3 cut(s) | 666, 688, 2014 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 274, 400 |
| XhoI | CTCGAG | 3 cut(s) | 1389, 2036, 2507 |
| XmiI | GTMKAC | 1 cut(s) | 1129 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1506, 2232 |
| XspI | CTAG | 6 cut(s) | 594, 1181, 1868, 2142, 2292, 2516 |
| ZrmI | AGTACT | 1 cut(s) | 712 |
| Zsp2I | ATGCAT | 3 cut(s) | 686, 1285, 2004 |