Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001493.1

Orthogroup ID

OG0000885

Physical Location & Seq

Genomic Coordinates Forward (+)

311768 .. 312500

Gene Structure 733 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001493.1_g000082.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

atgccttcttggtcctctttttgtagacagaagcatgatgtctttctaagttttagacgggaggatacccgcttgaattttacggaccatctatatgctgcattaattcagtgcggaatttccacctttagagatgacaaagatcttcagaaaggaatgtccattcgcaaacaactcgacaaagcaattgagggatcaaaggtttgggttgtcatcgtttcaccgaactatgcttcttcaaaatggtgtttgaatgagctattgaagattcttgaatgcagaaaagcatctaaagtgggaaagaagaacgaaactttgatgaagccagttgaagaatatgaagaacaaactcatactctattgaatggagacaaaacacataaggggaaggctagtttgaggaacaaggaaaacatcactaatcataataaaaaggaaatgggtgagttcagatttggcgttaactatggcggaaagtgggttggttctgtttacataggtggtgagacagaagaaatagtggtttcagaagacattacttataatgagcttctagatcaactgtatcatattgttggagtgcatccaaatgaaaatgagatcaagatcagtacgatcgataatcaaaatcaccggcttatcctgtggagataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_3 LRR_8 NB-ARC TIR

Protein Analysis

217

Amino Acids

25.16

Weight (kDa)

8.25

Isoelectric Point (pI)

43.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000885)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g26890 FvH4_2g26890 FvH4_2g26890 FvH4_3g20951 FvH4_3g20960 FvH4_3g20962
malus_domestica	MD03G1083300.v1.1 MD03G1083600.v1.1 MD08G1022000.v1.1 MD10G1261100.v1.1
prunus_persica	Prupe.1G183900_v2.0.a1 Prupe.1G184000_v2.0.a1
pyrus_communis	pycom03g06620 pycom05g26220 pycom10g21740
rosa_chinensis	RchiOBHm_Chr3g0475491 RchiOBHm_Chr5g0034591 RchiOBHm_Chr5g0035231 RchiOBHm_Chr5g0035371 RchiOBHm_Chr5g0035701 RchiOBHm_Chr5g0035711
rosa_laevigata	RLG00000005586 RLG00000022983 RLG00000033611 RLG00000033626 RLG00000033630 RLG00000033640 RLG00000033646 RLG00000033651 RLG00000033652
rosa_multiflora	Rmu_co8204696.1_g000001 Rmu_co8330583.1_g000001 Rmu_sc0001493.1_g000069 Rmu_sc0001493.1_g000077 Rmu_sc0001493.1_g000082 Rmu_sc0002460.1_g000096 Rmu_sc0002482.1_g000010 Rmu_sc0002482.1_g000012 Rmu_sc0002935.1_g000002 Rmu_sc0017377.1_g000001 Rmu_sc0026350.1_g000001 Rmu_sc0041591.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042270 Rroxscaffold_1G00044790 Rroxscaffold_1G00044920 Rroxscaffold_1G00045020 Rroxscaffold_1G00045140 Rroxscaffold_1G00045740
rosa_rugosa	Rorug05G0146700 Rorug05G0146800 Rorug05G0150900 Rorug05G0151900
rosa_samantha	Rh5CG274900 Rh5CG276400 Rh5DG247800 Rh5DG266600 Rh5DG465900
rosa_wichuraiana	Rw0G005840 Rw5G021800 Rw5G021890 Rw5G022260 Rw5G022350 Rw5G022510 Rw5G022560 Rw5G023950 Rw5G023960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	543
AccI	GTMKAC	1 cut(s)	25
AciI	CCGC	3 cut(s)	70, 114, 471
AclWI	GGATC	1 cut(s)	202
AcsI	RAATTY	2 cut(s)	76, 117
AcuI	CTGAAG	1 cut(s)	131
AfaI	GTAC	1 cut(s)	613
AgsI	TTSAA	7 cut(s)	76, 240, 253, 265, 275, 332, 364
AluBI	AGCT	2 cut(s)	259, 550
AluI	AGCT	2 cut(s)	259, 550
Alw26I	GTCTC	2 cut(s)	363, 500
AlwI	GGATC	1 cut(s)	202
ApeKI	GCWGC	1 cut(s)	98
ApoI	RAATTY	2 cut(s)	76, 117
AseI	ATTAAT	1 cut(s)	104
AspS9I	GGNCC	2 cut(s)	12, 85
AsuHPI	GGTGA	4 cut(s)	213, 455, 515, 623
AvaII	GGWCC	2 cut(s)	12, 85
BbsI	GAAGAC	1 cut(s)	537
BbvI	GCAGC	1 cut(s)	85
BccI	CCATC	1 cut(s)	96
BcgI	CGANNNNNNTGC	2 cut(s)	157, 191
BciVI	GTATCC	1 cut(s)	58
BcoDI	GTCTC	2 cut(s)	363, 500
BfaI	CTAG	2 cut(s)	393, 554
BfuI	GTATCC	1 cut(s)	58
BglII	AGATCT	1 cut(s)	142
BisI	GCNGC	1 cut(s)	99
BlsI	GCNGC	1 cut(s)	100
Bme18I	GGWCC	2 cut(s)	12, 85
BmgT120I	GGNCC	2 cut(s)	12, 85
BmsI	GCATC	2 cut(s)	296, 592
BpiI	GAAGAC	1 cut(s)	537
Bsa29I	ATCGAT	1 cut(s)	618
BsaBI	GATNNNNATC	1 cut(s)	605
Bse118I	RCCGGY	1 cut(s)	633
Bse1I	ACTGG	1 cut(s)	326
Bse8I	GATNNNNATC	1 cut(s)	605
BseCI	ATCGAT	1 cut(s)	618
BseGI	GGATG	1 cut(s)	583
BseJI	GATNNNNATC	1 cut(s)	605
BseNI	ACTGG	1 cut(s)	326
BseXI	GCAGC	1 cut(s)	85
Bsh1285I	CGRYCG	1 cut(s)	618
BshVI	ATCGAT	1 cut(s)	618
BsiEI	CGRYCG	1 cut(s)	618
BsiSI	CCGG	1 cut(s)	634
BsmAI	GTCTC	2 cut(s)	363, 500
BsmI	GAATGC	1 cut(s)	281
Bsp143I	GATC	6 cut(s)	142, 194, 556, 600, 606, 615
BspACI	CCGC	3 cut(s)	70, 114, 471
BspDI	ATCGAT	1 cut(s)	618
BspPI	GGATC	1 cut(s)	202
BsrFI	RCCGGY	1 cut(s)	633
BsrI	ACTGG	1 cut(s)	326
BssAI	RCCGGY	1 cut(s)	633
BssMI	GATC	6 cut(s)	142, 194, 556, 600, 606, 615
Bst4CI	ACNGT	1 cut(s)	564
BstDEI	CTNAG	1 cut(s)	47
BstF5I	GGATG	1 cut(s)	583
BstKTI	GATC	6 cut(s)	145, 197, 559, 603, 609, 618
BstMAI	GTCTC	2 cut(s)	363, 500
BstMBI	GATC	6 cut(s)	142, 194, 556, 600, 606, 615
BstMCI	CGRYCG	1 cut(s)	618
BstV1I	GCAGC	1 cut(s)	85
BstV2I	GAAGAC	1 cut(s)	537
BstX2I	RGATCY	1 cut(s)	142
BstYI	RGATCY	1 cut(s)	142
Bsu15I	ATCGAT	1 cut(s)	618
BsuI	GTATCC	1 cut(s)	58
BsuTUI	ATCGAT	1 cut(s)	618
BtsCI	GGATG	1 cut(s)	583
BtsIMutI	CAGTG	1 cut(s)	116
Cfr10I	RCCGGY	1 cut(s)	633
Cfr13I	GGNCC	2 cut(s)	12, 85
ClaI	ATCGAT	1 cut(s)	618
Csp6I	GTAC	1 cut(s)	612
CviAII	CATG	1 cut(s)	35
CviJI	RGCY	5 cut(s)	259, 325, 392, 550, 637
CviKI_1	RGCY	5 cut(s)	259, 325, 392, 550, 637
CviQI	GTAC	1 cut(s)	612
DdeI	CTNAG	1 cut(s)	47
DpnI	GATC	6 cut(s)	144, 196, 558, 602, 608, 617
DpnII	GATC	6 cut(s)	142, 194, 556, 600, 606, 615
EciI	GGCGGA	1 cut(s)	486
Eco47I	GGWCC	2 cut(s)	12, 85
Eco57I	CTGAAG	1 cut(s)	131
FaeI	CATG	1 cut(s)	38
FatI	CATG	1 cut(s)	34
FauI	CCCGC	1 cut(s)	77
FblI	GTMKAC	1 cut(s)	25
Fnu4HI	GCNGC	1 cut(s)	99
FokI	GGATG	1 cut(s)	570
Fsp4HI	GCNGC	1 cut(s)	99
FspBI	CTAG	2 cut(s)	393, 554
GluI	GCNGC	1 cut(s)	99
HapII	CCGG	1 cut(s)	634
Hin1II	CATG	1 cut(s)	38
HincII	GTYRAC	1 cut(s)	463
HindII	GTYRAC	1 cut(s)	463
HinfI	GANTC	1 cut(s)	268
HpaI	GTTAAC	1 cut(s)	463
HpaII	CCGG	1 cut(s)	634
HphI	GGTGA	4 cut(s)	213, 455, 515, 623
Hpy166II	GTNNAC	3 cut(s)	26, 463, 493
Hpy188I	TCNGA	3 cut(s)	150, 452, 529
Hpy188III	TCNNGA	3 cut(s)	272, 554, 604
Hpy8I	GTNNAC	3 cut(s)	26, 463, 493
HpyAV	CCTTC	2 cut(s)	15, 382
HpyCH4III	ACNGT	1 cut(s)	564
HpyCH4V	TGCA	3 cut(s)	101, 279, 583
HpyF3I	CTNAG	1 cut(s)	47
Hsp92II	CATG	1 cut(s)	38
KspAI	GTTAAC	1 cut(s)	463
Kzo9I	GATC	6 cut(s)	142, 194, 556, 600, 606, 615
LpnPI	CCDG	2 cut(s)	339, 647
Lsp1109I	GCAGC	1 cut(s)	85
LweI	GCATC	2 cut(s)	296, 592
MaeI	CTAG	2 cut(s)	393, 554
MalI	GATC	6 cut(s)	144, 196, 558, 602, 608, 617
MboI	GATC	6 cut(s)	142, 194, 556, 600, 606, 615
MboII	GAAGA	8 cut(s)	137, 228, 277, 316, 344, 353, 524, 542
MfeI	CAATTG	1 cut(s)	186
MflI	RGATCY	1 cut(s)	142
MluCI	AATT	4 cut(s)	76, 105, 117, 186
MmeI	TCCRAC	1 cut(s)	556
MnlI	CCTC	4 cut(s)	25, 55, 184, 393
MseI	TTAA	2 cut(s)	104, 462
MslI	CAYNNNNRTG	2 cut(s)	93, 588
MspI	CCGG	1 cut(s)	634
MunI	CAATTG	1 cut(s)	186
Mva1269I	GAATGC	1 cut(s)	281
NdeII	GATC	6 cut(s)	142, 194, 556, 600, 606, 615
NlaIII	CATG	1 cut(s)	38
PctI	GAATGC	1 cut(s)	281
PfeI	GAWTC	1 cut(s)	268
PkrI	GCNGC	1 cut(s)	100
Ple19I	CGATCG	1 cut(s)	618
PshBI	ATTAAT	1 cut(s)	104
PsiI	TTATAA	1 cut(s)	543
PspPI	GGNCC	2 cut(s)	12, 85
PsuI	RGATCY	1 cut(s)	142
PvuI	CGATCG	1 cut(s)	618
RsaI	GTAC	1 cut(s)	613
RsaNI	GTAC	1 cut(s)	612
RseI	CAYNNNNRTG	2 cut(s)	93, 588
SaqAI	TTAA	2 cut(s)	104, 462
SatI	GCNGC	1 cut(s)	99
Sau3AI	GATC	6 cut(s)	142, 194, 556, 600, 606, 615
Sau96I	GGNCC	2 cut(s)	12, 85
SetI	ASST	5 cut(s)	128, 204, 261, 502, 552
SfaNI	GCATC	2 cut(s)	296, 592
SinI	GGWCC	2 cut(s)	12, 85
SmiMI	CAYNNNNRTG	2 cut(s)	93, 588
Sse9I	AATT	4 cut(s)	76, 105, 117, 186
SsiI	CCGC	3 cut(s)	70, 114, 471
SspMI	CTAG	2 cut(s)	393, 554
TaaI	ACNGT	1 cut(s)	564
TaqI	TCGA	2 cut(s)	177, 618
TasI	AATT	4 cut(s)	76, 105, 117, 186
TfiI	GAWTC	1 cut(s)	268
Tru1I	TTAA	2 cut(s)	104, 462
Tru9I	TTAA	2 cut(s)	104, 462
TscAI	CASTG	1 cut(s)	116
TseI	GCWGC	1 cut(s)	98
TspDTI	ATGAA	3 cut(s)	335, 354, 606
TspGWI	ACGGA	1 cut(s)	98
TspRI	CASTG	1 cut(s)	116
VpaK11BI	GGWCC	2 cut(s)	12, 85
VspI	ATTAAT	1 cut(s)	104
XapI	RAATTY	2 cut(s)	76, 117
XbaI	TCTAGA	1 cut(s)	553
XmiI	GTMKAC	1 cut(s)	25
XspI	CTAG	2 cut(s)	393, 554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.