Rw5G022510

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000885
Physical Location & Seq
Reverse (-)
31180182 .. 31180743
562 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G022510.1

Sequence Viewer

Length: 468 bp
ATGGAAGGATGGAGTCATCACAAAGTGGTACAACACATCTTAGAAGATTTGGTACCTAGCTATCCGAGTTGCGTTCATTGTGTGACACCTGATCAGGTGCCTCATCTTCATACTCAAGTTGGACCATCGTCACCAAATGTGCCTTGTATGCAGCAGCAGCAACAACATTCTTACCAACAGACGACGTTGCAGCCTTGCTACGAGCACTATCAACCATCCTTTCAGCAGCCACAGCCTCTGTACCAACAACTTCATCCTTTCTACGTGCAGCAGCAGCCTCAGTACCAACAGCCGAATCCTTCCTACATGCAGCAGCCGCCGCCAATCCATCAAGTGCCTTACTCGCTCAAGATGTTCTGGAATGATGCAACCCAAATGTTTCAAGATTTCAACTTTTGGCAATTTAGTTTCGTCATCATTTTTTTAGGAAATATTTTCTATTTCTTAAGGCTTTGTAGAAATAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

155

Amino Acids

18.55

Weight (kDa)

6.32

Isoelectric Point (pI)

75.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 52
AccB1I GGYRCC 2 cut(s) 52, 97
AciI CCGC 2 cut(s) 317, 320
AdeI CACNNNGTG 1 cut(s) 25
AfaI GTAC 4 cut(s) 30, 54, 242, 284
AflII CTTAAG 1 cut(s) 445
AgsI TTSAA 2 cut(s) 383, 391
AluBI AGCT 1 cut(s) 60
AluI AGCT 1 cut(s) 60
Alw21I GWGCWC 1 cut(s) 207
AlwNI CAGNNNCTG 1 cut(s) 238
Asp718I GGTACC 1 cut(s) 52
AspS9I GGNCC 1 cut(s) 122
AsuHPI GGTGA 1 cut(s) 123
AvaII GGWCC 1 cut(s) 122
BanI GGYRCC 2 cut(s) 52, 97
BarI GAAGNNNNNNTAC 2 cut(s) 36, 68
Bbv12I GWGCWC 1 cut(s) 207
BccI CCATC 4 cut(s) 3, 133, 223, 336
BclI TGATCA 1 cut(s) 91
BfaI CTAG 1 cut(s) 57
BfrI CTTAAG 1 cut(s) 445
Bme18I GGWCC 1 cut(s) 122
BmgT120I GGNCC 1 cut(s) 122
BmiI GGNNCC 2 cut(s) 54, 99
BmsI GCATC 1 cut(s) 355
BoxI GACNNNNGTC 1 cut(s) 127
BpuEI CTTGAG 2 cut(s) 99, 332
BsaAI YACGTR 1 cut(s) 265
BseGI GGATG 3 cut(s) 14, 215, 253
BseMII CTCAG 1 cut(s) 293
BsgI GTGCAG 1 cut(s) 287
BshNI GGYRCC 2 cut(s) 52, 97
BsiHKAI GWGCWC 1 cut(s) 207
Bsp1286I GDGCHC 1 cut(s) 207
Bsp143I GATC 1 cut(s) 91
BspACI CCGC 2 cut(s) 317, 320
BspCNI CTCAG 1 cut(s) 292
BspLI GGNNCC 2 cut(s) 54, 99
BspT107I GGYRCC 2 cut(s) 52, 97
BspTI CTTAAG 1 cut(s) 445
BssMI GATC 1 cut(s) 91
BstAFI CTTAAG 1 cut(s) 445
BstBAI YACGTR 1 cut(s) 265
BstDEI CTNAG 2 cut(s) 40, 279
BstF5I GGATG 3 cut(s) 14, 215, 253
BstKTI GATC 1 cut(s) 94
BstMBI GATC 1 cut(s) 91
BstMWI GCNNNNNNNGC 7 cut(s) 148, 157, 232, 274, 316, 319, 343
BstNSI RCATGY 1 cut(s) 310
BstPAI GACNNNNGTC 1 cut(s) 127
BtsCI GGATG 3 cut(s) 14, 215, 253
CaiI CAGNNNCTG 1 cut(s) 238
Cfr13I GGNCC 1 cut(s) 122
Csp6I GTAC 4 cut(s) 29, 53, 241, 283
CviAII CATG 1 cut(s) 307
CviJI RGCY 8 cut(s) 60, 193, 229, 235, 277, 292, 316, 451
CviKI_1 RGCY 8 cut(s) 60, 193, 229, 235, 277, 292, 316, 451
CviQI GTAC 4 cut(s) 29, 53, 241, 283
DdeI CTNAG 2 cut(s) 40, 279
DpnI GATC 1 cut(s) 93
DpnII GATC 1 cut(s) 91
DraIII CACNNNGTG 1 cut(s) 25
Eco47I GGWCC 1 cut(s) 122
FaeI CATG 1 cut(s) 310
FaiI YATR 3 cut(s) 111, 149, 308
FatI CATG 1 cut(s) 306
FbaI TGATCA 1 cut(s) 91
FokI GGATG 3 cut(s) 21, 202, 240
FspBI CTAG 1 cut(s) 57
Hin1II CATG 1 cut(s) 310
HinfI GANTC 2 cut(s) 13, 295
HphI GGTGA 1 cut(s) 123
Hpy188I TCNGA 1 cut(s) 66
Hpy188III TCNNGA 3 cut(s) 349, 358, 383
Hpy99I CGWCG 1 cut(s) 187
HpyAV CCTTC 1 cut(s) 309
HpyCH4IV ACGT 2 cut(s) 185, 264
HpyCH4V TGCA 5 cut(s) 151, 190, 268, 310, 368
HpyF10VI GCNNNNNNNGC 7 cut(s) 148, 157, 232, 274, 316, 319, 343
HpyF3I CTNAG 2 cut(s) 40, 279
HpySE526I ACGT 2 cut(s) 185, 264
Hsp92II CATG 1 cut(s) 310
KpnI GGTACC 1 cut(s) 56
Ksp22I TGATCA 1 cut(s) 91
Kzo9I GATC 1 cut(s) 91
LpnPI CCDG 3 cut(s) 80, 102, 343
LweI GCATC 1 cut(s) 355
MaeI CTAG 1 cut(s) 57
MaeII ACGT 2 cut(s) 185, 264
MaeIII GTNAC 2 cut(s) 82, 129
MalI GATC 1 cut(s) 93
MboI GATC 1 cut(s) 91
MboII GAAGA 2 cut(s) 56, 98
MhlI GDGCHC 1 cut(s) 207
MluCI AATT 2 cut(s) 401, 463
MlyI GAGTC 1 cut(s) 22
MmeI TCCRAC 1 cut(s) 100
MnlI CCTC 3 cut(s) 111, 246, 288
MseI TTAA 1 cut(s) 446
MspCI CTTAAG 1 cut(s) 445
MwoI GCNNNNNNNGC 7 cut(s) 148, 157, 232, 274, 316, 319, 343
NdeII GATC 1 cut(s) 91
NlaIII CATG 1 cut(s) 310
NlaIV GGNNCC 2 cut(s) 54, 99
NmuCI GTSAC 2 cut(s) 82, 129
NspI RCATGY 1 cut(s) 310
PfeI GAWTC 1 cut(s) 295
PleI GAGTC 1 cut(s) 21
PpsI GAGTC 1 cut(s) 21
Ppu21I YACGTR 1 cut(s) 265
PshAI GACNNNNGTC 1 cut(s) 127
PspN4I GGNNCC 2 cut(s) 54, 99
PspPI GGNCC 1 cut(s) 122
PstNI CAGNNNCTG 1 cut(s) 238
RsaI GTAC 4 cut(s) 30, 54, 242, 284
RsaNI GTAC 4 cut(s) 29, 53, 241, 283
SaqAI TTAA 1 cut(s) 446
Sau3AI GATC 1 cut(s) 91
Sau96I GGNCC 1 cut(s) 122
SchI GAGTC 1 cut(s) 22
SduI GDGCHC 1 cut(s) 207
SetI ASST 6 cut(s) 58, 62, 91, 99, 188, 267
SfaNI GCATC 1 cut(s) 355
SinI GGWCC 1 cut(s) 122
SmlI CTYRAG 3 cut(s) 114, 347, 445
SmoI CTYRAG 3 cut(s) 114, 347, 445
Sse9I AATT 2 cut(s) 401, 463
SsiI CCGC 2 cut(s) 317, 320
SspI AATATT 1 cut(s) 433
SspMI CTAG 1 cut(s) 57
TaiI ACGT 2 cut(s) 188, 267
TasI AATT 2 cut(s) 401, 463
TauI GCSGC 2 cut(s) 319, 322
TfiI GAWTC 1 cut(s) 295
Tru1I TTAA 1 cut(s) 446
Tru9I TTAA 1 cut(s) 446
TseFI GTSAC 2 cut(s) 82, 129
Tsp45I GTSAC 2 cut(s) 82, 129
TspDTI ATGAA 3 cut(s) 65, 98, 242
Vha464I CTTAAG 1 cut(s) 445
VpaK11BI GGWCC 1 cut(s) 122
XceI RCATGY 1 cut(s) 310
XspI CTAG 1 cut(s) 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.