RchiOBHm_Chr5g0035371

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000885
Physical Location & Seq
Reverse (-)
29253360 .. 29253716
357 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ31426

Sequence Viewer

Length: 258 bp
ATGAGCTCCATATTTACTTTGTGCACTACTCTTGAACGACGGGCATTTCCTAATGGAAGGATGGAGACGTCATCACAAAATAGTGCTACGATGGAGTCATCAAAGAGTAATTGTACAACACATCTGAGGAGGTTTGGGACATATCAGAGTTGCATTCCTTCTATGACACCTGATAAGATGCCTTATCTTCATACTCAAGTTAGACTGTCGTCACCAAATGTTCCTTGTATGCAGCAGCAACAACATTCTTACCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

85

Amino Acids

9.71

Weight (kDa)

9.16

Isoelectric Point (pI)

82.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 71
AcyI GRCGYC 1 cut(s) 68
AfaI GTAC 1 cut(s) 115
AgsI TTSAA 1 cut(s) 35
AluBI AGCT 1 cut(s) 6
AluI AGCT 1 cut(s) 6
Alw21I GWGCWC 2 cut(s) 8, 26
Alw26I GTCTC 1 cut(s) 59
Alw44I GTGCAC 1 cut(s) 22
ApaLI GTGCAC 1 cut(s) 22
ApeKI GCWGC 2 cut(s) 232, 235
AsuHPI GGTGA 1 cut(s) 204
BaeGI GKGCMC 1 cut(s) 26
BanII GRGCYC 1 cut(s) 8
Bbv12I GWGCWC 2 cut(s) 8, 26
BbvI GCAGC 2 cut(s) 244, 247
BccI CCATC 2 cut(s) 55, 85
BcoDI GTCTC 1 cut(s) 59
BisI GCNGC 2 cut(s) 233, 236
BlsI GCNGC 2 cut(s) 234, 237
BmsI GCATC 1 cut(s) 168
BoxI GACNNNNGTC 1 cut(s) 208
BpuEI CTTGAG 1 cut(s) 180
BsaHI GRCGYC 1 cut(s) 68
BseGI GGATG 1 cut(s) 66
BseMII CTCAG 1 cut(s) 116
BseRI GAGGAG 1 cut(s) 142
BseSI GKGCMC 1 cut(s) 26
BseXI GCAGC 2 cut(s) 244, 247
BsiHKAI GWGCWC 2 cut(s) 8, 26
BslFI GGGAC 1 cut(s) 151
BsmAI GTCTC 1 cut(s) 59
BsmBI CGTCTC 1 cut(s) 59
BsmFI GGGAC 1 cut(s) 151
BsmI GAATGC 1 cut(s) 153
Bsp1286I GDGCHC 2 cut(s) 8, 26
Bsp1407I TGTACA 1 cut(s) 113
BspCNI CTCAG 1 cut(s) 117
BsrGI TGTACA 1 cut(s) 113
BssNI GRCGYC 1 cut(s) 68
Bst4CI ACNGT 1 cut(s) 207
BstACI GRCGYC 1 cut(s) 68
BstAUI TGTACA 1 cut(s) 113
BstDEI CTNAG 1 cut(s) 125
BstF5I GGATG 1 cut(s) 66
BstMAI GTCTC 1 cut(s) 59
BstPAI GACNNNNGTC 1 cut(s) 208
BstSLI GKGCMC 1 cut(s) 26
BstV1I GCAGC 2 cut(s) 244, 247
BtsCI GGATG 1 cut(s) 66
Csp6I GTAC 1 cut(s) 114
CviJI RGCY 1 cut(s) 6
CviKI_1 RGCY 1 cut(s) 6
CviQI GTAC 1 cut(s) 114
DdeI CTNAG 1 cut(s) 125
Ecl136II GAGCTC 1 cut(s) 6
Eco24I GRGCYC 1 cut(s) 8
Eco53kI GAGCTC 1 cut(s) 6
EcoICRI GAGCTC 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 8
Esp3I CGTCTC 1 cut(s) 59
FaiI YATR 5 cut(s) 11, 142, 164, 192, 230
FaqI GGGAC 1 cut(s) 151
Fnu4HI GCNGC 2 cut(s) 233, 236
FokI GGATG 1 cut(s) 73
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 2 cut(s) 233, 236
GluI GCNGC 2 cut(s) 233, 236
Hin1I GRCGYC 1 cut(s) 68
HinfI GANTC 1 cut(s) 95
HphI GGTGA 1 cut(s) 204
Hpy166II GTNNAC 1 cut(s) 24
Hpy188I TCNGA 2 cut(s) 126, 147
Hpy188III TCNNGA 1 cut(s) 32
Hpy8I GTNNAC 1 cut(s) 24
Hpy99I CGWCG 1 cut(s) 42
HpyAV CCTTC 2 cut(s) 51, 168
HpyCH4III ACNGT 1 cut(s) 207
HpyCH4IV ACGT 1 cut(s) 68
HpyCH4V TGCA 3 cut(s) 24, 153, 232
HpyF3I CTNAG 1 cut(s) 125
HpySE526I ACGT 1 cut(s) 68
Hsp92I GRCGYC 1 cut(s) 68
LmnI GCTCC 1 cut(s) 11
LpnPI CCDG 1 cut(s) 183
Lsp1109I GCAGC 2 cut(s) 244, 247
LweI GCATC 1 cut(s) 168
MaeII ACGT 1 cut(s) 68
MaeIII GTNAC 1 cut(s) 210
MboII GAAGA 1 cut(s) 179
MhlI GDGCHC 2 cut(s) 8, 26
MluCI AATT 1 cut(s) 109
MlyI GAGTC 1 cut(s) 104
MnlI CCTC 2 cut(s) 120, 123
Mva1269I GAATGC 1 cut(s) 153
NmuCI GTSAC 1 cut(s) 210
PctI GAATGC 1 cut(s) 153
PkrI GCNGC 2 cut(s) 234, 237
PleI GAGTC 1 cut(s) 103
PpsI GAGTC 1 cut(s) 103
PshAI GACNNNNGTC 1 cut(s) 208
Psp124BI GAGCTC 1 cut(s) 8
RsaI GTAC 1 cut(s) 115
RsaNI GTAC 1 cut(s) 114
SacI GAGCTC 1 cut(s) 8
SatI GCNGC 2 cut(s) 233, 236
SchI GAGTC 1 cut(s) 104
SduI GDGCHC 2 cut(s) 8, 26
SetI ASST 4 cut(s) 8, 71, 134, 172
SfaNI GCATC 1 cut(s) 168
SgeI CNNG 5 cut(s) 44, 53, 182, 209, 237
SmlI CTYRAG 1 cut(s) 195
SmoI CTYRAG 1 cut(s) 195
Sse9I AATT 1 cut(s) 109
SstI GAGCTC 1 cut(s) 8
TaaI ACNGT 1 cut(s) 207
TaiI ACGT 1 cut(s) 71
TasI AATT 1 cut(s) 109
TatI WGTACW 1 cut(s) 113
TseFI GTSAC 1 cut(s) 210
TseI GCWGC 2 cut(s) 232, 235
Tsp45I GTSAC 1 cut(s) 210
TspDTI ATGAA 1 cut(s) 179
VneI GTGCAC 1 cut(s) 22
ZraI GACGTC 1 cut(s) 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.