Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0000885

Physical Location & Seq

Genomic Coordinates Forward (+)

16446104 .. 16447857

Gene Structure 1754 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G183900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGACAACAAGAAGGTGTATTCGTACCTCTACAAATGGTGCTGAAATTGCGGAGAATGAAATTCTCTCGCACAGAAGCAGAGAAGTTGGGTTTTTCAACCTCCTGAATGGGATTAATAGTCAAATGTTAGAGGGGTTTCGCATTGTTAAAAATAAAATTTATGCACGCGACAGCAGGGGTGTTGGGGGCGGGAACCTTGGCAACAACTTCAACGGGGGATTCACATTTCTTCTTGTTCTTATTGCACTTGTTCTGTTATTGGGATTATTGGGATTTGCATACTACCTAACAAGTACTAAAAGTGAAATGTCTAGATTGACAATTTTGATTAGCTACGGTGGGAGGTGGGTTGACTCAAGGTACGAAAATTTCAAAGCTAAAGGAGTACTCGTTTCCAATACAATTACATTGAAGGAGCTTCAGAAGCAAGTATATGACATTGTCAATGTGGACCCAAATGACTATGAGATAACTATGATAGCTATGTATGAAACAATGAAAAGCGCATGGCCTGTAGAGATAGCCGATGATGATGATGTGAGAGCTTTTATTTTTCAAAGTCGTTTAAGTTCTTCTAAGATTCCATTGTGCATTACATTGGAGGAGACCAACCTTGGGGGGTCCCCACAAGCTCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DBD_Tnp_Mut MULE SWIM

Protein Analysis

213

Amino Acids

23.67

Weight (kDa)

6.61

Isoelectric Point (pI)

38.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000885)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g26890 FvH4_2g26890 FvH4_2g26890 FvH4_3g20951 FvH4_3g20960 FvH4_3g20962
malus_domestica	MD03G1083300.v1.1 MD03G1083600.v1.1 MD08G1022000.v1.1 MD10G1261100.v1.1
prunus_persica	Prupe.1G183900_v2.0.a1 Prupe.1G184000_v2.0.a1
pyrus_communis	pycom03g06620 pycom05g26220 pycom10g21740
rosa_chinensis	RchiOBHm_Chr3g0475491 RchiOBHm_Chr5g0034591 RchiOBHm_Chr5g0035231 RchiOBHm_Chr5g0035371 RchiOBHm_Chr5g0035701 RchiOBHm_Chr5g0035711
rosa_laevigata	RLG00000005586 RLG00000022983 RLG00000033611 RLG00000033626 RLG00000033630 RLG00000033640 RLG00000033646 RLG00000033651 RLG00000033652
rosa_multiflora	Rmu_co8204696.1_g000001 Rmu_co8330583.1_g000001 Rmu_sc0001493.1_g000069 Rmu_sc0001493.1_g000077 Rmu_sc0001493.1_g000082 Rmu_sc0002460.1_g000096 Rmu_sc0002482.1_g000010 Rmu_sc0002482.1_g000012 Rmu_sc0002935.1_g000002 Rmu_sc0017377.1_g000001 Rmu_sc0026350.1_g000001 Rmu_sc0041591.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042270 Rroxscaffold_1G00044790 Rroxscaffold_1G00044920 Rroxscaffold_1G00045020 Rroxscaffold_1G00045140 Rroxscaffold_1G00045740
rosa_rugosa	Rorug05G0146700 Rorug05G0146800 Rorug05G0150900 Rorug05G0151900
rosa_samantha	Rh5CG274900 Rh5CG276400 Rh5DG247800 Rh5DG266600 Rh5DG465900
rosa_wichuraiana	Rw0G005840 Rw5G021800 Rw5G021890 Rw5G022260 Rw5G022350 Rw5G022510 Rw5G022560 Rw5G023950 Rw5G023960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	168
AciI	CCGC	2 cut(s)	50, 189
AcsI	RAATTY	3 cut(s)	60, 156, 367
AcuI	CTGAAG	1 cut(s)	404
AfaI	GTAC	4 cut(s)	25, 295, 362, 387
AfiI	CCNNNNNNNGG	1 cut(s)	615
AgsI	TTSAA	5 cut(s)	97, 211, 373, 412, 557
AluBI	AGCT	6 cut(s)	333, 377, 418, 482, 545, 632
AluI	AGCT	6 cut(s)	333, 377, 418, 482, 545, 632
Alw26I	GTCTC	1 cut(s)	599
AoxI	GGCC	1 cut(s)	509
ApoI	RAATTY	3 cut(s)	60, 156, 367
AseI	ATTAAT	1 cut(s)	114
AspLEI	GCGC	1 cut(s)	506
AspS9I	GGNCC	2 cut(s)	451, 621
AvaII	GGWCC	2 cut(s)	451, 621
BcoDI	GTCTC	1 cut(s)	599
BfaI	CTAG	1 cut(s)	312
BfmI	CTRYAG	1 cut(s)	513
BmcAI	AGTACT	2 cut(s)	295, 387
Bme18I	GGWCC	2 cut(s)	451, 621
BmgT120I	GGNCC	2 cut(s)	451, 621
BmiI	GGNNCC	4 cut(s)	194, 453, 622, 623
BpuEI	CTTGAG	1 cut(s)	340
BsaI	GGTCTC	1 cut(s)	599
BsaJI	CCNNGG	2 cut(s)	196, 613
BsaXI	ACNNNNNCTCC	2 cut(s)	375, 405
Bsc4I	CCNNNNNNNGG	1 cut(s)	615
BseDI	CCNNGG	2 cut(s)	196, 613
BseLI	CCNNNNNNNGG	1 cut(s)	615
BseRI	GAGGAG	1 cut(s)	617
Bsh1236I	CGCG	1 cut(s)	168
BshFI	GGCC	1 cut(s)	511
BslFI	GGGAC	1 cut(s)	607
BslI	CCNNNNNNNGG	1 cut(s)	615
BsmAI	GTCTC	1 cut(s)	599
BsmFI	GGGAC	1 cut(s)	607
BsnI	GGCC	1 cut(s)	511
Bso31I	GGTCTC	1 cut(s)	599
BspACI	CCGC	2 cut(s)	50, 189
BspANI	GGCC	1 cut(s)	511
BspFNI	CGCG	1 cut(s)	168
BspLI	GGNNCC	4 cut(s)	194, 453, 622, 623
BspTNI	GGTCTC	1 cut(s)	599
BssECI	CCNNGG	2 cut(s)	196, 613
BssT1I	CCWWGG	2 cut(s)	196, 613
Bst4CI	ACNGT	1 cut(s)	338
BstC8I	GCNNGC	1 cut(s)	166
BstDEI	CTNAG	1 cut(s)	576
BstFNI	CGCG	1 cut(s)	168
BstHHI	GCGC	1 cut(s)	506
BstMAI	GTCTC	1 cut(s)	599
BstMWI	GCNNNNNNNGC	2 cut(s)	47, 424
BstSFI	CTRYAG	1 cut(s)	513
BstUI	CGCG	1 cut(s)	168
BsuRI	GGCC	1 cut(s)	511
Cac8I	GCNNGC	1 cut(s)	166
CfoI	GCGC	1 cut(s)	506
Cfr13I	GGNCC	2 cut(s)	451, 621
Csp6I	GTAC	4 cut(s)	24, 294, 361, 386
CviAII	CATG	1 cut(s)	507
CviJI	RGCY	8 cut(s)	333, 377, 418, 482, 511, 524, 545, 632
CviKI_1	RGCY	8 cut(s)	333, 377, 418, 482, 511, 524, 545, 632
CviQI	GTAC	4 cut(s)	24, 294, 361, 386
DdeI	CTNAG	1 cut(s)	576
Eco130I	CCWWGG	2 cut(s)	196, 613
Eco31I	GGTCTC	1 cut(s)	599
Eco47I	GGWCC	2 cut(s)	451, 621
Eco57I	CTGAAG	1 cut(s)	404
EcoO109I	RGGNCCY	1 cut(s)	621
EcoT14I	CCWWGG	2 cut(s)	196, 613
ErhI	CCWWGG	2 cut(s)	196, 613
FaeI	CATG	1 cut(s)	510
FaiI	YATR	9 cut(s)	162, 280, 433, 435, 465, 476, 485, 489, 508
FaqI	GGGAC	1 cut(s)	607
FatI	CATG	1 cut(s)	506
FauI	CCCGC	1 cut(s)	182
FspBI	CTAG	1 cut(s)	312
GlaI	GCGC	1 cut(s)	505
HaeIII	GGCC	1 cut(s)	511
HhaI	GCGC	1 cut(s)	506
Hin1II	CATG	1 cut(s)	510
Hin6I	GCGC	1 cut(s)	504
HinP1I	GCGC	1 cut(s)	504
HincII	GTYRAC	1 cut(s)	352
HindII	GTYRAC	1 cut(s)	352
HinfI	GANTC	3 cut(s)	219, 353, 580
Hpy166II	GTNNAC	2 cut(s)	352, 451
Hpy188I	TCNGA	1 cut(s)	423
Hpy188III	TCNNGA	2 cut(s)	103, 312
Hpy8I	GTNNAC	2 cut(s)	352, 451
HpyAV	CCTTC	2 cut(s)	6, 406
HpyCH4III	ACNGT	1 cut(s)	338
HpyCH4V	TGCA	4 cut(s)	164, 245, 278, 591
HpyF10VI	GCNNNNNNNGC	2 cut(s)	47, 424
HpyF3I	CTNAG	1 cut(s)	576
Hsp92II	CATG	1 cut(s)	510
HspAI	GCGC	1 cut(s)	504
KflI	GGGWCCC	1 cut(s)	621
LmnI	GCTCC	2 cut(s)	415, 637
LpnPI	CCDG	3 cut(s)	116, 160, 525
MaeI	CTAG	1 cut(s)	312
MboII	GAAGA	2 cut(s)	221, 564
MluCI	AATT	6 cut(s)	45, 60, 156, 321, 367, 402
MlyI	GAGTC	1 cut(s)	347
MnlI	CCTC	5 cut(s)	37, 110, 124, 336, 595
MseI	TTAA	3 cut(s)	114, 147, 566
MvnI	CGCG	1 cut(s)	168
MwoI	GCNNNNNNNGC	2 cut(s)	47, 424
NlaIII	CATG	1 cut(s)	510
NlaIV	GGNNCC	4 cut(s)	194, 453, 622, 623
PfeI	GAWTC	2 cut(s)	219, 580
PflFI	GACNNNGTC	1 cut(s)	440
PleI	GAGTC	1 cut(s)	347
PpsI	GAGTC	1 cut(s)	347
PpuMI	RGGWCCY	1 cut(s)	621
PshBI	ATTAAT	1 cut(s)	114
Psp5II	RGGWCCY	1 cut(s)	621
PspN4I	GGNNCC	4 cut(s)	194, 453, 622, 623
PspPI	GGNCC	2 cut(s)	451, 621
PspPPI	RGGWCCY	1 cut(s)	621
PsyI	GACNNNGTC	1 cut(s)	440
RsaI	GTAC	4 cut(s)	25, 295, 362, 387
RsaNI	GTAC	4 cut(s)	24, 294, 361, 386
SaqAI	TTAA	3 cut(s)	114, 147, 566
Sau96I	GGNCC	2 cut(s)	451, 621
ScaI	AGTACT	2 cut(s)	295, 387
SchI	GAGTC	1 cut(s)	347
SfcI	CTRYAG	1 cut(s)	513
SinI	GGWCC	2 cut(s)	451, 621
SmlI	CTYRAG	1 cut(s)	355
SmoI	CTYRAG	1 cut(s)	355
Sse9I	AATT	6 cut(s)	45, 60, 156, 321, 367, 402
SsiI	CCGC	2 cut(s)	50, 189
SspMI	CTAG	1 cut(s)	312
StyI	CCWWGG	2 cut(s)	196, 613
TaaI	ACNGT	1 cut(s)	338
TasI	AATT	6 cut(s)	45, 60, 156, 321, 367, 402
TatI	WGTACW	2 cut(s)	293, 385
TfiI	GAWTC	2 cut(s)	219, 580
Tru1I	TTAA	3 cut(s)	114, 147, 566
Tru9I	TTAA	3 cut(s)	114, 147, 566
TspDTI	ATGAA	3 cut(s)	72, 504, 512
Tth111I	GACNNNGTC	1 cut(s)	440
VpaK11BI	GGWCC	2 cut(s)	451, 621
VspI	ATTAAT	1 cut(s)	114
XapI	RAATTY	3 cut(s)	60, 156, 367
XbaI	TCTAGA	1 cut(s)	311
XspI	CTAG	1 cut(s)	312
ZrmI	AGTACT	2 cut(s)	295, 387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.