Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0000885

Physical Location & Seq

Genomic Coordinates Reverse (-)

31306014 .. 31309303

Gene Structure 3290 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G022560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGGGTGAGTTCAGACTTGGCGTTAACTATGGTGGAAAGTGGGTTGGTTCCTTTTACATAGGTGGTGAGACAGAAGAAATAATGGTTTCAGAAGACATTACTTATAATGAGCTTCTAGATCAACTGTATCATATTGTTGGAATAATCAATGATGATGACCTCAAAAATTTTATTGATCAGAGCATTTCTTCCGATATGCACTTGAAGCATCCATTGCCAAATTCTTCTAGAAGAATTATTGAAGTTAGAGTTTTGGTTAACCATGATGGAGAGTGGGTGAATTCTACATATGTTGGTGGCAAAATGAAAGGAATAATAATCTCAGAGGACATTACGTATCAAGAACTTGTTGATAGAGTGTATGGTGTTGTGGGAGTTGATCCAAATGAATATAAGTTGATTATGAAGACTGCATATAAATCAAATCTACCTACTCAACCTGTGGAGATAATCGATGATGAAGGCCTTGCATTTTTCATCCATGATGAGAATCTTTCACCGGGTATGAGCTCCATATTTACTTTGTGCGCTACCCTTGAACGATGGGCATTTCCTAATGGAAGGATGGAGTCCTCACATAGTGGTACAACACATCTTAGAAGATTTGGGACCTATCCGAGTTGCGTTCATTGTGTGACACCTAGTCAGGTGCCTCATCTTCATACTCAAGTTGGACCATCGTCACCAAATGTGCCTTGTATGCAGCAGCAGCAGCAGCAGCAGCAACAACCTTTCTACCAGCAACAACAACATTCTTACCGACAGACGACGTTGCAGCCTTGCTACGAGCACTATCAACCATCCTTTCGGCAGCCACAGCCTCTGTACCAACAACTTAATCCTTCCTACGTGAAGCAGCAGCCTCAGTACCAAAAGCCGAAGCCATCCTACGTGCAGCTGCTGTCACCAATTCATCATGTGCCTTACTCGCTCAATATGTTCTGGAATGATGCAACCCGAATATTTCAAGATTTCAACTTTTGGCAATTTAGTTTCATCATCATTTTATTAAGAAATATTTTCTATTTCTTACGGCTTTGTAGAAATAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_3 LRR_8 NB-ARC TIR

Protein Analysis

350

Amino Acids

40.73

Weight (kDa)

6.04

Isoelectric Point (pI)

58.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000885)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g26890 FvH4_2g26890 FvH4_2g26890 FvH4_3g20951 FvH4_3g20960 FvH4_3g20962
malus_domestica	MD03G1083300.v1.1 MD03G1083600.v1.1 MD08G1022000.v1.1 MD10G1261100.v1.1
prunus_persica	Prupe.1G183900_v2.0.a1 Prupe.1G184000_v2.0.a1
pyrus_communis	pycom03g06620 pycom05g26220 pycom10g21740
rosa_chinensis	RchiOBHm_Chr3g0475491 RchiOBHm_Chr5g0034591 RchiOBHm_Chr5g0035231 RchiOBHm_Chr5g0035371 RchiOBHm_Chr5g0035701 RchiOBHm_Chr5g0035711
rosa_laevigata	RLG00000005586 RLG00000022983 RLG00000033611 RLG00000033626 RLG00000033630 RLG00000033640 RLG00000033646 RLG00000033651 RLG00000033652
rosa_multiflora	Rmu_co8204696.1_g000001 Rmu_co8330583.1_g000001 Rmu_sc0001493.1_g000069 Rmu_sc0001493.1_g000077 Rmu_sc0001493.1_g000082 Rmu_sc0002460.1_g000096 Rmu_sc0002482.1_g000010 Rmu_sc0002482.1_g000012 Rmu_sc0002935.1_g000002 Rmu_sc0017377.1_g000001 Rmu_sc0026350.1_g000001 Rmu_sc0041591.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042270 Rroxscaffold_1G00044790 Rroxscaffold_1G00044920 Rroxscaffold_1G00045020 Rroxscaffold_1G00045140 Rroxscaffold_1G00045740
rosa_rugosa	Rorug05G0146700 Rorug05G0146800 Rorug05G0150900 Rorug05G0151900
rosa_samantha	Rh5CG274900 Rh5CG276400 Rh5DG247800 Rh5DG266600 Rh5DG465900
rosa_wichuraiana	Rw0G005840 Rw5G021800 Rw5G021890 Rw5G022260 Rw5G022350 Rw5G022510 Rw5G022560 Rw5G023950 Rw5G023960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	105
AccB1I	GGYRCC	1 cut(s)	649
AclWI	GGATC	1 cut(s)	374
AcsI	RAATTY	3 cut(s)	166, 220, 280
AdeI	CACNNNGTG	1 cut(s)	581
AfaI	GTAC	3 cut(s)	586, 827, 869
AgsI	TTSAA	5 cut(s)	205, 242, 539, 968, 976
AhdI	GACNNNNNGTC	1 cut(s)	642
AluBI	AGCT	3 cut(s)	112, 510, 898
AluI	AGCT	3 cut(s)	112, 510, 898
Alw21I	GWGCWC	2 cut(s)	512, 792
Alw26I	GTCTC	1 cut(s)	62
AlwI	GGATC	1 cut(s)	374
AlwNI	CAGNNNCTG	2 cut(s)	823, 901
AoxI	GGCC	1 cut(s)	463
ApoI	RAATTY	3 cut(s)	166, 220, 280
AspLEI	GCGC	1 cut(s)	530
AspS9I	GGNCC	2 cut(s)	609, 674
AsuC2I	CCSGG	1 cut(s)	501
AsuHPI	GGTGA	6 cut(s)	17, 77, 289, 489, 675, 897
AvaII	GGWCC	2 cut(s)	609, 674
BanI	GGYRCC	1 cut(s)	649
BanII	GRGCYC	1 cut(s)	512
BarI	GAAGNNNNNNTAC	2 cut(s)	872, 904
BbsI	GAAGAC	2 cut(s)	99, 413
Bbv12I	GWGCWC	2 cut(s)	512, 792
BccI	CCATC	6 cut(s)	260, 537, 559, 685, 808, 892
BceAI	ACGGC	1 cut(s)	1049
BclI	TGATCA	1 cut(s)	175
BcnI	CCSGG	1 cut(s)	501
BcoDI	GTCTC	1 cut(s)	62
BfaI	CTAG	3 cut(s)	116, 228, 642
Bme1390I	CCNGG	1 cut(s)	501
Bme18I	GGWCC	2 cut(s)	609, 674
BmeRI	GACNNNNNGTC	1 cut(s)	642
BmgT120I	GGNCC	2 cut(s)	609, 674
BmiI	GGNNCC	3 cut(s)	49, 610, 651
BmrFI	CCNGG	1 cut(s)	501
BmsI	GCATC	2 cut(s)	217, 940
BoxI	GACNNNNGTC	1 cut(s)	679
BpiI	GAAGAC	2 cut(s)	99, 413
BpuEI	CTTGAG	1 cut(s)	651
BpuMI	CCSGG	1 cut(s)	501
Bsa29I	ATCGAT	1 cut(s)	453
BsaAI	YACGTR	3 cut(s)	336, 850, 892
BsaBI	GATNNNNATC	1 cut(s)	489
BsaXI	ACNNNNNCTCC	2 cut(s)	261, 291
Bse3DI	GCAATG	1 cut(s)	212
Bse8I	GATNNNNATC	1 cut(s)	489
BseCI	ATCGAT	1 cut(s)	453
BseGI	GGATG	5 cut(s)	208, 477, 570, 800, 884
BseJI	GATNNNNATC	1 cut(s)	489
BseMI	GCAATG	1 cut(s)	212
BseMII	CTCAG	2 cut(s)	336, 878
BsgI	GTGCAG	1 cut(s)	914
BshFI	GGCC	1 cut(s)	465
BshNI	GGYRCC	1 cut(s)	649
BshVI	ATCGAT	1 cut(s)	453
BsiHKAI	GWGCWC	2 cut(s)	512, 792
BsiSI	CCGG	1 cut(s)	500
BslFI	GGGAC	1 cut(s)	622
BsmAI	GTCTC	1 cut(s)	62
BsmFI	GGGAC	1 cut(s)	622
BsnI	GGCC	1 cut(s)	465
Bsp1286I	GDGCHC	2 cut(s)	512, 792
Bsp143I	GATC	3 cut(s)	118, 175, 379
BspANI	GGCC	1 cut(s)	465
BspCNI	CTCAG	2 cut(s)	335, 877
BspDI	ATCGAT	1 cut(s)	453
BspLI	GGNNCC	3 cut(s)	49, 610, 651
BspPI	GGATC	1 cut(s)	374
BspT107I	GGYRCC	1 cut(s)	649
BsrDI	GCAATG	1 cut(s)	212
BssMI	GATC	3 cut(s)	118, 175, 379
Bst4CI	ACNGT	1 cut(s)	126
BstAPI	GCANNNNNTGC	1 cut(s)	214
BstBAI	YACGTR	3 cut(s)	336, 850, 892
BstDEI	CTNAG	3 cut(s)	322, 596, 864
BstF5I	GGATG	5 cut(s)	208, 477, 570, 800, 884
BstHHI	GCGC	1 cut(s)	530
BstKTI	GATC	3 cut(s)	121, 178, 382
BstMAI	GTCTC	1 cut(s)	62
BstMBI	GATC	3 cut(s)	118, 175, 379
BstPAI	GACNNNNGTC	1 cut(s)	679
BstSCI	CCNGG	1 cut(s)	499
BstSNI	TACGTA	1 cut(s)	336
BstV2I	GAAGAC	2 cut(s)	99, 413
Bsu15I	ATCGAT	1 cut(s)	453
BsuRI	GGCC	1 cut(s)	465
BsuTUI	ATCGAT	1 cut(s)	453
BtsCI	GGATG	5 cut(s)	208, 477, 570, 800, 884
CaiI	CAGNNNCTG	2 cut(s)	823, 901
CfoI	GCGC	1 cut(s)	530
Cfr13I	GGNCC	2 cut(s)	609, 674
ClaI	ATCGAT	1 cut(s)	453
Csp6I	GTAC	3 cut(s)	585, 826, 868
CviAII	CATG	3 cut(s)	263, 482, 917
CviQI	GTAC	3 cut(s)	585, 826, 868
DdeI	CTNAG	3 cut(s)	322, 596, 864
DpnI	GATC	3 cut(s)	120, 177, 381
DpnII	GATC	3 cut(s)	118, 175, 379
DraIII	CACNNNGTG	1 cut(s)	581
DriI	GACNNNNNGTC	1 cut(s)	642
Eam1105I	GACNNNNNGTC	1 cut(s)	642
Ecl136II	GAGCTC	1 cut(s)	510
Eco105I	TACGTA	1 cut(s)	336
Eco147I	AGGCCT	1 cut(s)	465
Eco24I	GRGCYC	1 cut(s)	512
Eco47I	GGWCC	2 cut(s)	609, 674
Eco53kI	GAGCTC	1 cut(s)	510
EcoICRI	GAGCTC	1 cut(s)	510
EcoO109I	RGGNCCY	1 cut(s)	609
EcoRI	GAATTC	1 cut(s)	280
EcoT38I	GRGCYC	1 cut(s)	512
FaeI	CATG	3 cut(s)	266, 485, 920
FaqI	GGGAC	1 cut(s)	622
FatI	CATG	3 cut(s)	262, 481, 916
FauNDI	CATATG	1 cut(s)	289
FbaI	TGATCA	1 cut(s)	175
FokI	GGATG	5 cut(s)	195, 464, 577, 787, 871
FriOI	GRGCYC	1 cut(s)	512
FspBI	CTAG	3 cut(s)	116, 228, 642
GlaI	GCGC	1 cut(s)	529
HaeIII	GGCC	1 cut(s)	465
HapII	CCGG	1 cut(s)	500
HhaI	GCGC	1 cut(s)	530
Hin1II	CATG	3 cut(s)	266, 485, 920
Hin6I	GCGC	1 cut(s)	528
HinP1I	GCGC	1 cut(s)	528
HincII	GTYRAC	2 cut(s)	25, 259
HindII	GTYRAC	2 cut(s)	25, 259
HinfI	GANTC	2 cut(s)	490, 569
HpaI	GTTAAC	2 cut(s)	25, 259
HpaII	CCGG	1 cut(s)	500
HphI	GGTGA	6 cut(s)	17, 77, 289, 489, 675, 897
Hpy166II	GTNNAC	2 cut(s)	25, 259
Hpy188I	TCNGA	6 cut(s)	14, 91, 180, 193, 325, 618
Hpy188III	TCNNGA	5 cut(s)	116, 228, 341, 943, 968
Hpy8I	GTNNAC	2 cut(s)	25, 259
Hpy99I	CGWCG	1 cut(s)	772
HpyAV	CCTTC	3 cut(s)	455, 555, 852
HpyCH4III	ACNGT	1 cut(s)	126
HpyCH4IV	ACGT	4 cut(s)	335, 770, 849, 891
HpyCH4V	TGCA	7 cut(s)	199, 413, 470, 703, 775, 895, 953
HpyF3I	CTNAG	3 cut(s)	322, 596, 864
HpySE526I	ACGT	4 cut(s)	335, 770, 849, 891
Hsp92II	CATG	3 cut(s)	266, 485, 920
HspAI	GCGC	1 cut(s)	528
Ksp22I	TGATCA	1 cut(s)	175
KspAI	GTTAAC	2 cut(s)	25, 259
Kzo9I	GATC	3 cut(s)	118, 175, 379
LmnI	GCTCC	1 cut(s)	515
LpnPI	CCDG	5 cut(s)	453, 513, 632, 752, 928
LweI	GCATC	2 cut(s)	217, 940
MaeI	CTAG	3 cut(s)	116, 228, 642
MaeII	ACGT	4 cut(s)	335, 770, 849, 891
MaeIII	GTNAC	3 cut(s)	634, 681, 903
MalI	GATC	3 cut(s)	120, 177, 381
MboI	GATC	3 cut(s)	118, 175, 379
MboII	GAAGA	8 cut(s)	86, 104, 180, 216, 243, 418, 612, 650
MhlI	GDGCHC	2 cut(s)	512, 792
MluCI	AATT	7 cut(s)	166, 220, 234, 280, 909, 986, 1048
MlyI	GAGTC	1 cut(s)	578
MmeI	TCCRAC	2 cut(s)	118, 652
MnlI	CCTC	6 cut(s)	170, 319, 583, 663, 831, 873
MseI	TTAA	4 cut(s)	24, 258, 837, 1010
MspA1I	CMGCKG	1 cut(s)	898
MspI	CCGG	1 cut(s)	500
MspR9I	CCNGG	1 cut(s)	501
NciI	CCSGG	1 cut(s)	501
NdeI	CATATG	1 cut(s)	289
NdeII	GATC	3 cut(s)	118, 175, 379
NlaIII	CATG	3 cut(s)	266, 485, 920
NlaIV	GGNNCC	3 cut(s)	49, 610, 651
NmuCI	GTSAC	3 cut(s)	634, 681, 903
PceI	AGGCCT	1 cut(s)	465
PfeI	GAWTC	1 cut(s)	490
PleI	GAGTC	1 cut(s)	577
PpsI	GAGTC	1 cut(s)	577
Ppu21I	YACGTR	3 cut(s)	336, 850, 892
PpuMI	RGGWCCY	1 cut(s)	609
PshAI	GACNNNNGTC	1 cut(s)	679
PsiI	TTATAA	1 cut(s)	105
Psp124BI	GAGCTC	1 cut(s)	512
Psp5II	RGGWCCY	1 cut(s)	609
PspN4I	GGNNCC	3 cut(s)	49, 610, 651
PspPI	GGNCC	2 cut(s)	609, 674
PspPPI	RGGWCCY	1 cut(s)	609
PstNI	CAGNNNCTG	2 cut(s)	823, 901
PvuII	CAGCTG	1 cut(s)	898
RsaI	GTAC	3 cut(s)	586, 827, 869
RsaNI	GTAC	3 cut(s)	585, 826, 868
SacI	GAGCTC	1 cut(s)	512
SaqAI	TTAA	4 cut(s)	24, 258, 837, 1010
Sau3AI	GATC	3 cut(s)	118, 175, 379
Sau96I	GGNCC	2 cut(s)	609, 674
SchI	GAGTC	1 cut(s)	578
ScrFI	CCNGG	1 cut(s)	501
SduI	GDGCHC	2 cut(s)	512, 792
SfaNI	GCATC	2 cut(s)	217, 940
SinI	GGWCC	2 cut(s)	609, 674
SmlI	CTYRAG	1 cut(s)	666
SmoI	CTYRAG	1 cut(s)	666
SnaBI	TACGTA	1 cut(s)	336
Sse9I	AATT	7 cut(s)	166, 220, 234, 280, 909, 986, 1048
SseBI	AGGCCT	1 cut(s)	465
SspI	AATATT	2 cut(s)	963, 1018
SspMI	CTAG	3 cut(s)	116, 228, 642
SstI	GAGCTC	1 cut(s)	512
StuI	AGGCCT	1 cut(s)	465
StyD4I	CCNGG	1 cut(s)	499
TaaI	ACNGT	1 cut(s)	126
TaiI	ACGT	4 cut(s)	338, 773, 852, 894
TaqI	TCGA	1 cut(s)	453
TasI	AATT	7 cut(s)	166, 220, 234, 280, 909, 986, 1048
TfiI	GAWTC	1 cut(s)	490
Tru1I	TTAA	4 cut(s)	24, 258, 837, 1010
Tru9I	TTAA	4 cut(s)	24, 258, 837, 1010
TseFI	GTSAC	3 cut(s)	634, 681, 903
Tsp45I	GTSAC	3 cut(s)	634, 681, 903
TspDTI	ATGAA	9 cut(s)	320, 402, 419, 466, 474, 617, 650, 902, 985
VpaK11BI	GGWCC	2 cut(s)	609, 674
XapI	RAATTY	3 cut(s)	166, 220, 280
XbaI	TCTAGA	2 cut(s)	115, 227
XspI	CTAG	3 cut(s)	116, 228, 642

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.