FvH4_3g32560

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000621
Physical Location & Seq
Reverse (-)
27853168 .. 27854519
1352 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g32560.t1

Sequence Viewer

Length: 729 bp
ATGAGACAGCAGAGTTTTGAGGGTTCTCATCGGAGAAAAGTCATATCAGTCGGACCGTTTGGGTCAAACTCAAACAAAGAGAGGGGTCTTTGGGATGATGGAGTTTACTCGACGGTGAGTCAGGTGGTAATACAGTTTGATCTTTCCAGCATTCGTTGGATTCAGTTTGGATACGTCGATGAGAACGGGAGATCAGTTTGGTCAGAAAGGCATGGCTTATCTGTTCCCGCCGTGACTAAAAAACACGTGGTAAAACTTGATTATCCATACGAATTTTTGACGTCTGTTCGTGGATATTATTTCGATAATATGTTTACGACTTGTATTACCGAACTTATTTTGACGAGCAACAGAAGAACTTATGGACCATTTGGATCTGGTTTTAAATGGGCAAACTCTTTTTCAATCGAATTGAAAGGGAGTAAGATCGTCGGGTTTCATGGCAGGGTGAATTGGTACTCAACGCTTGTTTCGTTAGGAGCTTACCTAACTCCCATTGATGGCTTTGAACATCATGATGAATATGAAAACCTTGGCTATCCAGCAAAGCCTCTACTTCCAGCTCAAGATTCTACTGGGTATGCAACTCCCCAGGAAGAAGGAAAGTCTAAGAATTCGAAGGAGATATCTTACATAATTTCCGGCAATCAAATTAGTGGAAACGAAGGGAACCACAATGGAACCTTTGTTGTCGGGAGCAAGGCTAAATATGTTGTTATAAACGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jacalin

Protein Analysis

243

Amino Acids

27.16

Weight (kDa)

8.48

Isoelectric Point (pI)

30.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Jacalin PF01419 17 - 162 3.6e-28 Jacalin-like lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000621)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g32560 FvH4_3g35880 FvH4_4g19501 FvH4_4g19530 FvH4_4g19531 FvH4_4g19540 FvH4_4g19540
prunus_persica Prupe.1G121600_v2.0.a1 Prupe.1G121700_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0416301 RchiOBHm_Chr4g0424661
rosa_laevigata RLG00000007388 RLG00000007432 RLG00000007434 RLG00000007435 RLG00000007439 RLG00000007441 RLG00000007442 RLG00000007458 RLG00000007465 RLG00000007997 RLG00000008015 RLG00000008016 RLG00000008017 RLG00000035315
rosa_multiflora Rmu_co8150926.1_g000001 Rmu_co8225682.1_g000001 Rmu_co8296077.1_g000001 Rmu_sc0004841.1_g000022 Rmu_sc0006553.1_g000008 Rmu_sc0008889.1_g000002
rosa_roxburghii Rroxscaffold_1G00030220 Rroxscaffold_2G00114820 Rroxscaffold_3G00219510 Rroxscaffold_3G00255600 Rroxscaffold_4G00304060 Rroxscaffold_4G00330360 Rroxscaffold_4G00330400 Rroxscaffold_5G00359920 Rroxscaffold_5G00359930 Rroxscaffold_5G00359960 Rroxscaffold_5G00366600 Rroxscaffold_5G00366630 Rroxscaffold_5G00366640 Rroxscaffold_5G00366710 Rroxscaffold_5G00366970
rosa_rugosa Rorug04G0138400 Rorug04G0138500 Rorug04G0138700 Rorug04G0140600 Rorug04G0199000 Rorug07G0061600
rosa_samantha Rh4AG255800 Rh4AG255900 Rh4AG256000 Rh4AG256200 Rh4BG261200 Rh4BG261300 Rh4BG261600 Rh4CG212100 Rh4CG212800 Rh4CG212900 Rh4CG272300 Rh4CG272500 Rh4CG272600 Rh4CG272800 Rh4CG275800 Rh4DG255800 Rh4DG255900 Rh4DG256200 Rh4DG257200 Rh4DG257300 Rh7BG190600 Rh7CG198100
rosa_wichuraiana Rw1G001980 Rw4G022090 Rw4G024000 Rw4G024010 Rw7G016430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 719
AatII GACGTC 1 cut(s) 284
AciI CCGC 1 cut(s) 228
AclWI GGATC 1 cut(s) 382
AcsI RAATTY 2 cut(s) 272, 613
AcvI CACGTG 1 cut(s) 247
AcyI GRCGYC 1 cut(s) 281
AfaI GTAC 1 cut(s) 458
AfiI CCNNNNNNNGG 1 cut(s) 500
AflIII ACRYGT 2 cut(s) 244, 723
AgsI TTSAA 3 cut(s) 405, 415, 509
AhdI GACNNNNNGTC 1 cut(s) 117
AjnI CCWGG 1 cut(s) 591
AluBI AGCT 2 cut(s) 482, 563
AluI AGCT 2 cut(s) 482, 563
AlwI GGATC 1 cut(s) 382
ApoI RAATTY 2 cut(s) 272, 613
AspS9I GGNCC 2 cut(s) 53, 365
AsuHPI GGTGA 2 cut(s) 127, 460
AsuII TTCGAA 1 cut(s) 617
AvaII GGWCC 2 cut(s) 53, 365
BbrPI CACGTG 1 cut(s) 247
BccI CCATC 2 cut(s) 92, 494
BceAI ACGGC 1 cut(s) 215
BciT130I CCWGG 1 cut(s) 593
BciVI GTATCC 1 cut(s) 164
BfuI GTATCC 1 cut(s) 164
Bme1390I CCNGG 1 cut(s) 593
Bme18I GGWCC 2 cut(s) 53, 365
BmeRI GACNNNNNGTC 1 cut(s) 117
BmgT120I GGNCC 2 cut(s) 53, 365
BmiI GGNNCC 2 cut(s) 671, 682
BmrFI CCNGG 1 cut(s) 593
BmrI ACTGGG 1 cut(s) 585
BmuI ACTGGG 1 cut(s) 585
Bpu14I TTCGAA 1 cut(s) 617
BpuEI CTTGAG 1 cut(s) 549
BsaAI YACGTR 1 cut(s) 247
BsaHI GRCGYC 1 cut(s) 281
BsaJI CCNNGG 2 cut(s) 532, 591
Bsc4I CCNNNNNNNGG 1 cut(s) 500
Bse1I ACTGG 1 cut(s) 580
BseBI CCWGG 1 cut(s) 593
BseDI CCNNGG 2 cut(s) 532, 591
BseGI GGATG 1 cut(s) 100
BseLI CCNNNNNNNGG 1 cut(s) 500
BseNI ACTGG 1 cut(s) 580
BsiSI CCGG 1 cut(s) 642
BslI CCNNNNNNNGG 1 cut(s) 500
BsmI GAATGC 1 cut(s) 150
Bsp119I TTCGAA 1 cut(s) 617
Bsp143I GATC 4 cut(s) 139, 191, 374, 426
BspACI CCGC 1 cut(s) 228
BspHI TCATGA 1 cut(s) 514
BspLI GGNNCC 2 cut(s) 671, 682
BspPI GGATC 1 cut(s) 382
BspT104I TTCGAA 1 cut(s) 617
BsrI ACTGG 1 cut(s) 580
BssECI CCNNGG 2 cut(s) 532, 591
BssMI GATC 4 cut(s) 139, 191, 374, 426
BssNI GRCGYC 1 cut(s) 281
BssT1I CCWWGG 1 cut(s) 532
Bst2UI CCWGG 1 cut(s) 593
Bst4CI ACNGT 3 cut(s) 57, 115, 135
BstACI GRCGYC 1 cut(s) 281
BstBAI YACGTR 1 cut(s) 247
BstBI TTCGAA 1 cut(s) 617
BstDEI CTNAG 1 cut(s) 609
BstF5I GGATG 1 cut(s) 100
BstKTI GATC 4 cut(s) 142, 194, 377, 429
BstMBI GATC 4 cut(s) 139, 191, 374, 426
BstNI CCWGG 1 cut(s) 593
BstSCI CCNGG 1 cut(s) 591
BstX2I RGATCY 1 cut(s) 374
BstYI RGATCY 1 cut(s) 374
BsuI GTATCC 1 cut(s) 164
BtsCI GGATG 1 cut(s) 100
CciI TCATGA 1 cut(s) 514
Cfr13I GGNCC 2 cut(s) 53, 365
CpoI CGGWCCG 1 cut(s) 53
Csp6I GTAC 1 cut(s) 457
CspI CGGWCCG 1 cut(s) 53
CviAII CATG 3 cut(s) 212, 440, 515
CviJI RGCY 7 cut(s) 216, 482, 504, 537, 550, 563, 704
CviKI_1 RGCY 7 cut(s) 216, 482, 504, 537, 550, 563, 704
CviQI GTAC 1 cut(s) 457
DdeI CTNAG 1 cut(s) 609
DpnI GATC 4 cut(s) 141, 193, 376, 428
DpnII GATC 4 cut(s) 139, 191, 374, 426
DraI TTTAAA 1 cut(s) 385
DriI GACNNNNNGTC 1 cut(s) 117
Eam1105I GACNNNNNGTC 1 cut(s) 117
Eco130I CCWWGG 1 cut(s) 532
Eco32I GATATC 1 cut(s) 627
Eco47I GGWCC 2 cut(s) 53, 365
Eco72I CACGTG 1 cut(s) 247
EcoRI GAATTC 1 cut(s) 613
EcoRII CCWGG 1 cut(s) 591
EcoRV GATATC 1 cut(s) 627
EcoT14I CCWWGG 1 cut(s) 532
ErhI CCWWGG 1 cut(s) 532
FaeI CATG 3 cut(s) 215, 443, 518
FatI CATG 3 cut(s) 211, 439, 514
FauI CCCGC 1 cut(s) 235
FokI GGATG 1 cut(s) 107
HapII CCGG 1 cut(s) 642
Hin1I GRCGYC 1 cut(s) 281
Hin1II CATG 3 cut(s) 215, 443, 518
HinfI GANTC 3 cut(s) 118, 160, 569
HpaII CCGG 1 cut(s) 642
HphI GGTGA 2 cut(s) 127, 460
Hpy166II GTNNAC 2 cut(s) 106, 315
Hpy188I TCNGA 3 cut(s) 33, 53, 205
Hpy188III TCNNGA 3 cut(s) 515, 566, 694
Hpy8I GTNNAC 2 cut(s) 106, 315
Hpy99I CGWCG 3 cut(s) 115, 179, 434
HpyAV CCTTC 3 cut(s) 593, 613, 659
HpyCH4III ACNGT 3 cut(s) 57, 115, 135
HpyCH4IV ACGT 4 cut(s) 174, 246, 281, 723
HpyCH4V TGCA 1 cut(s) 584
HpyF3I CTNAG 1 cut(s) 609
HpySE526I ACGT 4 cut(s) 174, 246, 281, 723
Hsp92I GRCGYC 1 cut(s) 281
Hsp92II CATG 3 cut(s) 215, 443, 518
Kzo9I GATC 4 cut(s) 139, 191, 374, 426
LmnI GCTCC 2 cut(s) 479, 696
MaeII ACGT 4 cut(s) 174, 246, 281, 723
MaeIII GTNAC 1 cut(s) 232
MalI GATC 4 cut(s) 141, 193, 376, 428
MboI GATC 4 cut(s) 139, 191, 374, 426
MboII GAAGA 2 cut(s) 366, 608
MflI RGATCY 1 cut(s) 374
MluCI AATT 6 cut(s) 272, 410, 451, 613, 636, 651
MlyI GAGTC 1 cut(s) 127
MmeI TCCRAC 2 cut(s) 31, 137
MnlI CCTC 3 cut(s) 13, 75, 561
MseI TTAA 1 cut(s) 384
MslI CAYNNNNRTG 1 cut(s) 516
MspI CCGG 1 cut(s) 642
MspR9I CCNGG 1 cut(s) 593
Mva1269I GAATGC 1 cut(s) 150
MvaI CCWGG 1 cut(s) 593
NdeII GATC 4 cut(s) 139, 191, 374, 426
NlaIII CATG 3 cut(s) 215, 443, 518
NlaIV GGNNCC 2 cut(s) 671, 682
NmuCI GTSAC 1 cut(s) 232
NspV TTCGAA 1 cut(s) 617
PagI TCATGA 1 cut(s) 514
PcsI WCGNNNNNNNCGW 1 cut(s) 470
PctI GAATGC 1 cut(s) 150
PfeI GAWTC 2 cut(s) 160, 569
PleI GAGTC 1 cut(s) 126
PmaCI CACGTG 1 cut(s) 247
PmlI CACGTG 1 cut(s) 247
PpsI GAGTC 1 cut(s) 126
Ppu21I YACGTR 1 cut(s) 247
PsiI TTATAA 1 cut(s) 719
Psp6I CCWGG 1 cut(s) 591
PspCI CACGTG 1 cut(s) 247
PspGI CCWGG 1 cut(s) 591
PspN4I GGNNCC 2 cut(s) 671, 682
PspPI GGNCC 2 cut(s) 53, 365
PsuI RGATCY 1 cut(s) 374
RsaI GTAC 1 cut(s) 458
RsaNI GTAC 1 cut(s) 457
RseI CAYNNNNRTG 1 cut(s) 516
Rsr2I CGGWCCG 1 cut(s) 53
RsrII CGGWCCG 1 cut(s) 53
SaqAI TTAA 1 cut(s) 384
Sau3AI GATC 4 cut(s) 139, 191, 374, 426
Sau96I GGNCC 2 cut(s) 53, 365
SchI GAGTC 1 cut(s) 127
ScrFI CCNGG 1 cut(s) 593
SfuI TTCGAA 1 cut(s) 617
SinI GGWCC 2 cut(s) 53, 365
SmiMI CAYNNNNRTG 1 cut(s) 516
SmlI CTYRAG 1 cut(s) 564
SmoI CTYRAG 1 cut(s) 564
Sse9I AATT 6 cut(s) 272, 410, 451, 613, 636, 651
SsiI CCGC 1 cut(s) 228
StyD4I CCNGG 1 cut(s) 591
StyI CCWWGG 1 cut(s) 532
TaaI ACNGT 3 cut(s) 57, 115, 135
TaiI ACGT 4 cut(s) 177, 249, 284, 726
TaqI TCGA 5 cut(s) 110, 177, 303, 408, 617
TasI AATT 6 cut(s) 272, 410, 451, 613, 636, 651
TfiI GAWTC 2 cut(s) 160, 569
Tru1I TTAA 1 cut(s) 384
Tru9I TTAA 1 cut(s) 384
TseFI GTSAC 1 cut(s) 232
Tsp45I GTSAC 1 cut(s) 232
TspDTI ATGAA 3 cut(s) 428, 534, 540
VpaK11BI GGWCC 2 cut(s) 53, 365
XapI RAATTY 2 cut(s) 272, 613
ZraI GACGTC 1 cut(s) 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.