Rh7BG190600

Jacalin-like lectin domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000621
Physical Location & Seq
Forward (+)
15404388 .. 15406071
1684 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG190600.1

Sequence Viewer

Length: 789 bp
ATGAGTACTTTTGAGGAACCGGAGAAGAAAGTGGTATCAGTTGGACCATGGGGAGGCCAAACTGGGCTCATGTGGGATGACGGAGTTTACTCAACGGTAAGGCAATTAGTGATAGCTCATGGCTCTGGGATTGACTCCATCCAGATTGAGTATGATAGCAAAGGGTGCTCATTTTGGTCAGACAAGCATGGTGGAAATGGAGGCTGGAAAACAGACAAGGTGAAGCTTGATTATCCAGAGGAATTTTTGACTTCAATTCATGGGTATTATGGCAAGATAAGTGAATGGGGGACAGTCTCAGTCCGATCGCTTACTTTCAAGAGCAACAAAAGATCTTATGGACCTTTTGGAATTGAACAAGGAAACTATTTTTCACTTCCAGTGACAACTGGTAACAAAATTGTTGGGTTTCATGGGAGGTCTGGCTGGTATCTTGATGCAATAGGAGCTTACCTCAAGCCGATTCAGAATGATCAAAACCACTACAACGTAGTTATGGCTCACACACAGTACAGTTATATGACTGGTGGCGCTGACATCCCTGCTGGCTACTCACTACTCCAAAACTGTGATGTGTTTCTCGCTATAAGACCCGAGGATGATCCCATTACTACAAACCCTGCAGCTTCAATGCCCAACAAGCTCTTTAGGCAGTTTTCTAATTCTTCAGTGCCCACGGCCGACGTCGGCCCATCATCAAGCCCACAGCTAGCGCTGTTAGATCTTCAAACGCATAGCTTGGTTTCAGTCCTGGAACATGTCCTTCATTGTTCATACCTATTACATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jacalin

Protein Analysis

262

Amino Acids

28.88

Weight (kDa)

5.89

Isoelectric Point (pI)

40.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Jacalin PF01419 14 - 151 2e-48 Jacalin-like lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000621)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g32560 FvH4_3g35880 FvH4_4g19501 FvH4_4g19530 FvH4_4g19531 FvH4_4g19540 FvH4_4g19540
prunus_persica Prupe.1G121600_v2.0.a1 Prupe.1G121700_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0416301 RchiOBHm_Chr4g0424661
rosa_laevigata RLG00000007388 RLG00000007432 RLG00000007434 RLG00000007435 RLG00000007439 RLG00000007441 RLG00000007442 RLG00000007458 RLG00000007465 RLG00000007997 RLG00000008015 RLG00000008016 RLG00000008017 RLG00000035315
rosa_multiflora Rmu_co8150926.1_g000001 Rmu_co8225682.1_g000001 Rmu_co8296077.1_g000001 Rmu_sc0004841.1_g000022 Rmu_sc0006553.1_g000008 Rmu_sc0008889.1_g000002
rosa_roxburghii Rroxscaffold_1G00030220 Rroxscaffold_2G00114820 Rroxscaffold_3G00219510 Rroxscaffold_3G00255600 Rroxscaffold_4G00304060 Rroxscaffold_4G00330360 Rroxscaffold_4G00330400 Rroxscaffold_5G00359920 Rroxscaffold_5G00359930 Rroxscaffold_5G00359960 Rroxscaffold_5G00366600 Rroxscaffold_5G00366630 Rroxscaffold_5G00366640 Rroxscaffold_5G00366710 Rroxscaffold_5G00366970
rosa_rugosa Rorug04G0138400 Rorug04G0138500 Rorug04G0138700 Rorug04G0140600 Rorug04G0199000 Rorug07G0061600
rosa_samantha Rh4AG255800 Rh4AG255900 Rh4AG256000 Rh4AG256200 Rh4BG261200 Rh4BG261300 Rh4BG261600 Rh4CG212100 Rh4CG212800 Rh4CG212900 Rh4CG272300 Rh4CG272500 Rh4CG272600 Rh4CG272800 Rh4CG275800 Rh4DG255800 Rh4DG255900 Rh4DG256200 Rh4DG257200 Rh4DG257300 Rh7BG190600 Rh7CG198100
rosa_wichuraiana Rw1G001980 Rw4G022090 Rw4G024000 Rw4G024010 Rw7G016430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 687
AclWI GGATC 1 cut(s) 596
AcoI YGGCCR 1 cut(s) 678
AcsI RAATTY 1 cut(s) 242
AcuI CTGAAG 1 cut(s) 651
AcyI GRCGYC 1 cut(s) 684
AfaI GTAC 2 cut(s) 7, 512
AfeI AGCGCT 1 cut(s) 714
AfiI CCNNNNNNNGG 1 cut(s) 53
AflIII ACRYGT 1 cut(s) 757
AgsI TTSAA 5 cut(s) 255, 319, 356, 630, 728
AjnI CCWGG 1 cut(s) 750
AluBI AGCT 7 cut(s) 116, 226, 449, 626, 643, 709, 738
AluI AGCT 7 cut(s) 116, 226, 449, 626, 643, 709, 738
Alw21I GWGCWC 1 cut(s) 170
Alw26I GTCTC 1 cut(s) 301
AlwI GGATC 1 cut(s) 596
Ama87I CYCGRG 1 cut(s) 593
Aor51HI AGCGCT 1 cut(s) 714
AoxI GGCC 3 cut(s) 55, 678, 688
ApeKI GCWGC 1 cut(s) 623
ApoI RAATTY 1 cut(s) 242
AspLEI GCGC 2 cut(s) 533, 715
AspS9I GGNCC 3 cut(s) 44, 341, 689
AsuHPI GGTGA 1 cut(s) 232
AsuNHI GCTAGC 1 cut(s) 709
AvaI CYCGRG 1 cut(s) 593
AvaII GGWCC 2 cut(s) 44, 341
BaeGI GKGCMC 1 cut(s) 675
BanII GRGCYC 1 cut(s) 69
Bbv12I GWGCWC 1 cut(s) 170
BbvI GCAGC 1 cut(s) 635
BccI CCATC 2 cut(s) 146, 700
BceAI ACGGC 1 cut(s) 693
BciT130I CCWGG 1 cut(s) 752
BclI TGATCA 1 cut(s) 472
BcoDI GTCTC 1 cut(s) 301
BfaI CTAG 1 cut(s) 710
BfmI CTRYAG 1 cut(s) 621
BfoI RGCGCY 2 cut(s) 534, 716
BglII AGATCT 2 cut(s) 332, 721
BisI GCNGC 1 cut(s) 624
BlsI GCNGC 1 cut(s) 625
BmcAI AGTACT 1 cut(s) 7
Bme1390I CCNGG 1 cut(s) 752
Bme18I GGWCC 2 cut(s) 44, 341
BmeT110I CYCGRG 1 cut(s) 593
BmgT120I GGNCC 3 cut(s) 44, 341, 689
BmiI GGNNCC 1 cut(s) 18
BmrFI CCNGG 1 cut(s) 752
BmrI ACTGGG 1 cut(s) 72
BmsI GCATC 1 cut(s) 427
BmtI GCTAGC 1 cut(s) 713
BmuI ACTGGG 1 cut(s) 72
BplI GAGNNNNNCTC 2 cut(s) 438, 470
BpuEI CTTGAG 1 cut(s) 440
BsaHI GRCGYC 1 cut(s) 684
BsaJI CCNNGG 3 cut(s) 47, 594, 675
BsaWI WCCGGW 1 cut(s) 19
Bsc4I CCNNNNNNNGG 1 cut(s) 53
Bse1I ACTGG 4 cut(s) 67, 380, 394, 529
BseBI CCWGG 1 cut(s) 752
BseDI CCNNGG 3 cut(s) 47, 594, 675
BseGI GGATG 4 cut(s) 82, 138, 537, 604
BseLI CCNNNNNNNGG 1 cut(s) 53
BseMII CTCAG 1 cut(s) 312
BseNI ACTGG 4 cut(s) 67, 380, 394, 529
BseSI GKGCMC 1 cut(s) 675
BseX3I CGGCCG 1 cut(s) 678
BseXI GCAGC 1 cut(s) 635
Bsh1285I CGRYCG 2 cut(s) 308, 681
BshFI GGCC 3 cut(s) 57, 680, 690
BsiEI CGRYCG 2 cut(s) 308, 681
BsiHKAI GWGCWC 1 cut(s) 170
BsiHKCI CYCGRG 1 cut(s) 593
BsiSI CCGG 1 cut(s) 20
BslFI GGGAC 1 cut(s) 304
BslI CCNNNNNNNGG 1 cut(s) 53
BsmAI GTCTC 1 cut(s) 301
BsmFI GGGAC 1 cut(s) 304
BsnI GGCC 3 cut(s) 57, 680, 690
BsoBI CYCGRG 1 cut(s) 593
Bsp1286I GDGCHC 3 cut(s) 69, 170, 675
Bsp143I GATC 5 cut(s) 305, 332, 472, 601, 721
Bsp19I CCATGG 1 cut(s) 47
BspANI GGCC 3 cut(s) 57, 680, 690
BspCNI CTCAG 1 cut(s) 311
BspLI GGNNCC 1 cut(s) 18
BspMAI CTGCAG 1 cut(s) 625
BspOI GCTAGC 1 cut(s) 713
BspPI GGATC 1 cut(s) 596
BsrI ACTGG 4 cut(s) 67, 380, 394, 529
BssECI CCNNGG 3 cut(s) 47, 594, 675
BssMI GATC 5 cut(s) 305, 332, 472, 601, 721
BssNI GRCGYC 1 cut(s) 684
BssT1I CCWWGG 1 cut(s) 47
Bst2UI CCWGG 1 cut(s) 752
Bst4CI ACNGT 5 cut(s) 97, 295, 510, 515, 569
BstACI GRCGYC 1 cut(s) 684
BstAPI GCANNNNNTGC 1 cut(s) 165
BstC8I GCNNGC 2 cut(s) 547, 711
BstDEI CTNAG 1 cut(s) 298
BstDSI CCRYGG 2 cut(s) 47, 675
BstF5I GGATG 4 cut(s) 82, 138, 537, 604
BstH2I RGCGCY 2 cut(s) 534, 716
BstHHI GCGC 2 cut(s) 533, 715
BstKTI GATC 5 cut(s) 308, 335, 475, 604, 724
BstMAI GTCTC 1 cut(s) 301
BstMBI GATC 5 cut(s) 305, 332, 472, 601, 721
BstMCI CGRYCG 2 cut(s) 308, 681
BstMWI GCNNNNNNNGC 4 cut(s) 165, 446, 640, 649
BstNI CCWGG 1 cut(s) 752
BstNSI RCATGY 1 cut(s) 761
BstSCI CCNGG 1 cut(s) 750
BstSFI CTRYAG 1 cut(s) 621
BstSLI GKGCMC 1 cut(s) 675
BstV1I GCAGC 1 cut(s) 635
BstX2I RGATCY 2 cut(s) 332, 721
BstYI RGATCY 2 cut(s) 332, 721
BstZI CGGCCG 1 cut(s) 678
BsuRI GGCC 3 cut(s) 57, 680, 690
BtgI CCRYGG 2 cut(s) 47, 675
BtsCI GGATG 4 cut(s) 82, 138, 537, 604
BtsIMutI CAGTG 2 cut(s) 387, 675
Cac8I GCNNGC 2 cut(s) 547, 711
CfoI GCGC 2 cut(s) 533, 715
Cfr13I GGNCC 3 cut(s) 44, 341, 689
Csp6I GTAC 2 cut(s) 6, 511
CspCI CAANNNNNGTGG 2 cut(s) 172, 207
CviAII CATG 7 cut(s) 48, 70, 119, 188, 260, 413, 758
CviQI GTAC 2 cut(s) 6, 511
DdeI CTNAG 1 cut(s) 298
DpnI GATC 5 cut(s) 307, 334, 474, 603, 723
DpnII GATC 5 cut(s) 305, 332, 472, 601, 721
EaeI YGGCCR 1 cut(s) 678
EagI CGGCCG 1 cut(s) 678
EclXI CGGCCG 1 cut(s) 678
Eco130I CCWWGG 1 cut(s) 47
Eco24I GRGCYC 1 cut(s) 69
Eco47I GGWCC 2 cut(s) 44, 341
Eco47III AGCGCT 1 cut(s) 714
Eco52I CGGCCG 1 cut(s) 678
Eco57I CTGAAG 1 cut(s) 651
Eco88I CYCGRG 1 cut(s) 593
EcoRII CCWGG 1 cut(s) 750
EcoT14I CCWWGG 1 cut(s) 47
EcoT38I GRGCYC 1 cut(s) 69
ErhI CCWWGG 1 cut(s) 47
FaeI CATG 7 cut(s) 51, 73, 122, 191, 263, 416, 761
FaqI GGGAC 1 cut(s) 304
FatI CATG 7 cut(s) 47, 69, 118, 187, 259, 412, 757
FbaI TGATCA 1 cut(s) 472
Fnu4HI GCNGC 1 cut(s) 624
FokI GGATG 4 cut(s) 89, 125, 524, 611
FriOI GRGCYC 1 cut(s) 69
Fsp4HI GCNGC 1 cut(s) 624
FspBI CTAG 1 cut(s) 710
GlaI GCGC 2 cut(s) 532, 714
GluI GCNGC 1 cut(s) 624
HaeII RGCGCY 2 cut(s) 534, 716
HaeIII GGCC 3 cut(s) 57, 680, 690
HapII CCGG 1 cut(s) 20
HhaI GCGC 2 cut(s) 533, 715
Hin1I GRCGYC 1 cut(s) 684
Hin1II CATG 7 cut(s) 51, 73, 122, 191, 263, 416, 761
Hin6I GCGC 2 cut(s) 531, 713
HinP1I GCGC 2 cut(s) 531, 713
HindIII AAGCTT 1 cut(s) 224
HinfI GANTC 2 cut(s) 134, 463
HpaII CCGG 1 cut(s) 20
HphI GGTGA 1 cut(s) 232
Hpy166II GTNNAC 1 cut(s) 88
Hpy188I TCNGA 3 cut(s) 181, 305, 468
Hpy188III TCNNGA 4 cut(s) 142, 236, 319, 434
Hpy8I GTNNAC 1 cut(s) 88
Hpy99I CGWCG 2 cut(s) 686, 689
HpyAV CCTTC 1 cut(s) 773
HpyCH4III ACNGT 5 cut(s) 97, 295, 510, 515, 569
HpyCH4IV ACGT 2 cut(s) 489, 684
HpyCH4V TGCA 2 cut(s) 440, 623
HpyF10VI GCNNNNNNNGC 4 cut(s) 165, 446, 640, 649
HpyF3I CTNAG 1 cut(s) 298
HpySE526I ACGT 2 cut(s) 489, 684
Hsp92I GRCGYC 1 cut(s) 684
Hsp92II CATG 7 cut(s) 51, 73, 122, 191, 263, 416, 761
HspAI GCGC 2 cut(s) 531, 713
Ksp22I TGATCA 1 cut(s) 472
Kzo9I GATC 5 cut(s) 305, 332, 472, 601, 721
LmnI GCTCC 1 cut(s) 446
Lsp1109I GCAGC 1 cut(s) 635
LweI GCATC 1 cut(s) 427
MaeI CTAG 1 cut(s) 710
MaeII ACGT 2 cut(s) 489, 684
MaeIII GTNAC 2 cut(s) 382, 392
MalI GATC 5 cut(s) 307, 334, 474, 603, 723
MboI GATC 5 cut(s) 305, 332, 472, 601, 721
MboII GAAGA 3 cut(s) 37, 657, 716
MflI RGATCY 2 cut(s) 332, 721
MhlI GDGCHC 3 cut(s) 69, 170, 675
MluCI AATT 6 cut(s) 104, 242, 255, 351, 399, 661
MlyI GAGTC 1 cut(s) 128
MmeI TCCRAC 1 cut(s) 22
MnlI CCTC 7 cut(s) 7, 47, 194, 232, 411, 464, 589
MspI CCGG 1 cut(s) 20
MspR9I CCNGG 1 cut(s) 752
MvaI CCWGG 1 cut(s) 752
MwoI GCNNNNNNNGC 4 cut(s) 165, 446, 640, 649
NcoI CCATGG 1 cut(s) 47
NdeII GATC 5 cut(s) 305, 332, 472, 601, 721
NheI GCTAGC 1 cut(s) 709
NlaIII CATG 7 cut(s) 51, 73, 122, 191, 263, 416, 761
NlaIV GGNNCC 1 cut(s) 18
NmuCI GTSAC 1 cut(s) 382
NspI RCATGY 1 cut(s) 761
PciI ACATGT 1 cut(s) 757
PfeI GAWTC 1 cut(s) 463
PfoI TCCNGGA 1 cut(s) 750
PkrI GCNGC 1 cut(s) 625
Ple19I CGATCG 1 cut(s) 308
PleI GAGTC 1 cut(s) 128
PpsI GAGTC 1 cut(s) 128
PscI ACATGT 1 cut(s) 757
Psp6I CCWGG 1 cut(s) 750
PspGI CCWGG 1 cut(s) 750
PspN4I GGNNCC 1 cut(s) 18
PspPI GGNCC 3 cut(s) 44, 341, 689
PstI CTGCAG 1 cut(s) 625
PsuI RGATCY 2 cut(s) 332, 721
PvuI CGATCG 1 cut(s) 308
RsaI GTAC 2 cut(s) 7, 512
RsaNI GTAC 2 cut(s) 6, 511
SatI GCNGC 1 cut(s) 624
Sau3AI GATC 5 cut(s) 305, 332, 472, 601, 721
Sau96I GGNCC 3 cut(s) 44, 341, 689
ScaI AGTACT 1 cut(s) 7
SchI GAGTC 1 cut(s) 128
ScrFI CCNGG 1 cut(s) 752
SduI GDGCHC 3 cut(s) 69, 170, 675
SfaNI GCATC 1 cut(s) 427
SfcI CTRYAG 1 cut(s) 621
SinI GGWCC 2 cut(s) 44, 341
SmlI CTYRAG 1 cut(s) 455
SmoI CTYRAG 1 cut(s) 455
Sse9I AATT 6 cut(s) 104, 242, 255, 351, 399, 661
SspMI CTAG 1 cut(s) 710
StyD4I CCNGG 1 cut(s) 750
StyI CCWWGG 1 cut(s) 47
TaaI ACNGT 5 cut(s) 97, 295, 510, 515, 569
TaiI ACGT 2 cut(s) 492, 687
TasI AATT 6 cut(s) 104, 242, 255, 351, 399, 661
TatI WGTACW 2 cut(s) 5, 510
TfiI GAWTC 1 cut(s) 463
TscAI CASTG 2 cut(s) 387, 675
TseFI GTSAC 1 cut(s) 382
TseI GCWGC 1 cut(s) 623
Tsp45I GTSAC 1 cut(s) 382
TspDTI ATGAA 4 cut(s) 248, 401, 755, 762
TspGWI ACGGA 1 cut(s) 96
TspRI CASTG 2 cut(s) 387, 675
VpaK11BI GGWCC 2 cut(s) 44, 341
XapI RAATTY 1 cut(s) 242
XceI RCATGY 1 cut(s) 761
XspI CTAG 1 cut(s) 710
ZraI GACGTC 1 cut(s) 685
ZrmI AGTACT 1 cut(s) 7
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.