Rroxscaffold_5G00366600

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000621
Physical Location & Seq
Reverse (-)
48523018 .. 48524143
1126 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00366600.1

Sequence Viewer

Length: 474 bp
ATGTCTCATCATGCTCATCTGATGAACCCAGGCGCCATGTTCGCCAATGGTTCAGATCCAAATCAGCCTTCGTACAATACCAACTATGGCGCTCAAGCTCCAGCTCCAGCTCATAATGGATATCCAGGTTATGCTCCGCCTCCTCCATCTTATGGATACTATAACCCTAACCATGCATTACAGGGCGGTTCTGCTCCGCCTGCTCAAGCCCCATATGGCTATTACCCTCCTCCTCCGGCTTATAACAATGGATACTATGACCCTCGATTCTATCAGGCGCCTGTTCGACGTCCCGCTAAGCCGAAGACTCCTGGTAAGCCCAAGGCTGCAAGGAGCGGTTCTAAGAACGTATCATACAAGGTTGCAGGGAATCGGATTAGCGGCAACACGGGGGACCATAATGGAGTTTTCAACGTTGGCAACAAGAATTCTGGTCGCCACATGGATGACGACGACGAGGAAGATGAATACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jacalin

Protein Analysis

157

Amino Acids

16.92

Weight (kDa)

8.67

Isoelectric Point (pI)

49.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000621)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g32560 FvH4_3g35880 FvH4_4g19501 FvH4_4g19530 FvH4_4g19531 FvH4_4g19540 FvH4_4g19540
prunus_persica Prupe.1G121600_v2.0.a1 Prupe.1G121700_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0416301 RchiOBHm_Chr4g0424661
rosa_laevigata RLG00000007388 RLG00000007432 RLG00000007434 RLG00000007435 RLG00000007439 RLG00000007441 RLG00000007442 RLG00000007458 RLG00000007465 RLG00000007997 RLG00000008015 RLG00000008016 RLG00000008017 RLG00000035315
rosa_multiflora Rmu_co8150926.1_g000001 Rmu_co8225682.1_g000001 Rmu_co8296077.1_g000001 Rmu_sc0004841.1_g000022 Rmu_sc0006553.1_g000008 Rmu_sc0008889.1_g000002
rosa_roxburghii Rroxscaffold_1G00030220 Rroxscaffold_2G00114820 Rroxscaffold_3G00219510 Rroxscaffold_3G00255600 Rroxscaffold_4G00304060 Rroxscaffold_4G00330360 Rroxscaffold_4G00330400 Rroxscaffold_5G00359920 Rroxscaffold_5G00359930 Rroxscaffold_5G00359960 Rroxscaffold_5G00366600 Rroxscaffold_5G00366630 Rroxscaffold_5G00366640 Rroxscaffold_5G00366710 Rroxscaffold_5G00366970
rosa_rugosa Rorug04G0138400 Rorug04G0138500 Rorug04G0138700 Rorug04G0140600 Rorug04G0199000 Rorug07G0061600
rosa_samantha Rh4AG255800 Rh4AG255900 Rh4AG256000 Rh4AG256200 Rh4BG261200 Rh4BG261300 Rh4BG261600 Rh4CG212100 Rh4CG212800 Rh4CG212900 Rh4CG272300 Rh4CG272500 Rh4CG272600 Rh4CG272800 Rh4CG275800 Rh4DG255800 Rh4DG255900 Rh4DG256200 Rh4DG257200 Rh4DG257300 Rh7BG190600 Rh7CG198100
rosa_wichuraiana Rw1G001980 Rw4G022090 Rw4G024000 Rw4G024010 Rw7G016430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 243
AatII GACGTC 1 cut(s) 292
AccB1I GGYRCC 2 cut(s) 32, 277
AccB7I CCANNNNNTGG 1 cut(s) 152
AccBSI CCGCTC 1 cut(s) 336
AciI CCGC 6 cut(s) 137, 186, 197, 294, 336, 381
AclI AACGTT 1 cut(s) 414
AclWI GGATC 1 cut(s) 50
AcsI RAATTY 1 cut(s) 427
AcyI GRCGYC 3 cut(s) 33, 278, 289
AfaI GTAC 1 cut(s) 74
AfiI CCNNNNNNNGG 1 cut(s) 152
AgsI TTSAA 1 cut(s) 412
AjnI CCWGG 3 cut(s) 28, 124, 310
AjuI GAANNNNNNNTTGG 2 cut(s) 52, 84
AluBI AGCT 3 cut(s) 98, 104, 110
AluI AGCT 3 cut(s) 98, 104, 110
Alw26I GTCTC 1 cut(s) 9
AlwI GGATC 1 cut(s) 50
ApeKI GCWGC 1 cut(s) 326
ApoI RAATTY 1 cut(s) 427
AspLEI GCGC 3 cut(s) 35, 92, 280
AspS9I GGNCC 1 cut(s) 394
AvaII GGWCC 1 cut(s) 394
BanI GGYRCC 2 cut(s) 32, 277
BbsI GAAGAC 1 cut(s) 311
BbvI GCAGC 1 cut(s) 313
BccI CCATC 1 cut(s) 154
BciT130I CCWGG 3 cut(s) 30, 126, 312
BciVI GTATCC 2 cut(s) 149, 245
BcoDI GTCTC 1 cut(s) 9
BfoI RGCGCY 3 cut(s) 36, 93, 281
BfuI GTATCC 2 cut(s) 149, 245
BisI GCNGC 2 cut(s) 327, 382
BlpI GCTNAGC 1 cut(s) 297
BlsI GCNGC 2 cut(s) 328, 383
Bme1390I CCNGG 3 cut(s) 30, 126, 312
Bme18I GGWCC 1 cut(s) 394
BmgT120I GGNCC 1 cut(s) 394
BmiI GGNNCC 3 cut(s) 34, 279, 395
BmrFI CCNGG 3 cut(s) 30, 126, 312
BpiI GAAGAC 1 cut(s) 311
BpmI CTGGAG 2 cut(s) 84, 90
Bpu1102I GCTNAGC 1 cut(s) 297
BpuEI CTTGAG 2 cut(s) 78, 189
BsaBI GATNNNNATC 1 cut(s) 60
BsaHI GRCGYC 3 cut(s) 33, 278, 289
BsaJI CCNNGG 2 cut(s) 28, 321
Bsc4I CCNNNNNNNGG 1 cut(s) 152
Bse8I GATNNNNATC 1 cut(s) 60
BseBI CCWGG 3 cut(s) 30, 126, 312
BseDI CCNNGG 2 cut(s) 28, 321
BseGI GGATG 1 cut(s) 451
BseJI GATNNNNATC 1 cut(s) 60
BseLI CCNNNNNNNGG 1 cut(s) 152
BseRI GAGGAG 3 cut(s) 132, 219, 222
BseXI GCAGC 1 cut(s) 313
BshNI GGYRCC 2 cut(s) 32, 277
BsiSI CCGG 1 cut(s) 236
BslFI GGGAC 2 cut(s) 276, 407
BslI CCNNNNNNNGG 1 cut(s) 152
BsmAI GTCTC 1 cut(s) 9
BsmFI GGGAC 2 cut(s) 276, 407
Bsp143I GATC 1 cut(s) 55
Bsp1720I GCTNAGC 1 cut(s) 297
BspACI CCGC 6 cut(s) 137, 186, 197, 294, 336, 381
BspLI GGNNCC 3 cut(s) 34, 279, 395
BspPI GGATC 1 cut(s) 50
BspT107I GGYRCC 2 cut(s) 32, 277
BsrBI CCGCTC 1 cut(s) 336
BssECI CCNNGG 2 cut(s) 28, 321
BssMI GATC 1 cut(s) 55
BssNI GRCGYC 3 cut(s) 33, 278, 289
BssT1I CCWWGG 1 cut(s) 321
Bst2UI CCWGG 3 cut(s) 30, 126, 312
BstACI GRCGYC 3 cut(s) 33, 278, 289
BstC8I GCNNGC 1 cut(s) 201
BstDEI CTNAG 2 cut(s) 297, 342
BstF5I GGATG 1 cut(s) 451
BstH2I RGCGCY 3 cut(s) 36, 93, 281
BstHHI GCGC 3 cut(s) 35, 92, 280
BstKTI GATC 1 cut(s) 58
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 1 cut(s) 55
BstMWI GCNNNNNNNGC 2 cut(s) 41, 200
BstNI CCWGG 3 cut(s) 30, 126, 312
BstSCI CCNGG 3 cut(s) 28, 124, 310
BstV1I GCAGC 1 cut(s) 313
BstV2I GAAGAC 1 cut(s) 311
BstX2I RGATCY 1 cut(s) 55
BstYI RGATCY 1 cut(s) 55
BsuI GTATCC 2 cut(s) 149, 245
BtsCI GGATG 1 cut(s) 451
Cac8I GCNNGC 1 cut(s) 201
CfoI GCGC 3 cut(s) 35, 92, 280
Cfr13I GGNCC 1 cut(s) 394
Csp6I GTAC 1 cut(s) 73
CviAII CATG 4 cut(s) 11, 37, 173, 442
CviQI GTAC 1 cut(s) 73
DdeI CTNAG 2 cut(s) 297, 342
DinI GGCGCC 2 cut(s) 34, 279
DpnI GATC 1 cut(s) 57
DpnII GATC 1 cut(s) 55
EciI GGCGGA 2 cut(s) 126, 186
Eco130I CCWWGG 1 cut(s) 321
Eco32I GATATC 1 cut(s) 122
Eco47I GGWCC 1 cut(s) 394
EcoRI GAATTC 1 cut(s) 427
EcoRII CCWGG 3 cut(s) 28, 124, 310
EcoRV GATATC 1 cut(s) 122
EcoT14I CCWWGG 1 cut(s) 321
EcoT22I ATGCAT 1 cut(s) 178
EgeI GGCGCC 2 cut(s) 34, 279
EheI GGCGCC 2 cut(s) 34, 279
ErhI CCWWGG 1 cut(s) 321
FaeI CATG 4 cut(s) 14, 40, 176, 445
FaqI GGGAC 2 cut(s) 276, 407
FatI CATG 4 cut(s) 10, 36, 172, 441
FauI CCCGC 1 cut(s) 301
FauNDI CATATG 1 cut(s) 214
Fnu4HI GCNGC 2 cut(s) 327, 382
FokI GGATG 1 cut(s) 458
Fsp4HI GCNGC 2 cut(s) 327, 382
GlaI GCGC 3 cut(s) 34, 91, 279
GluI GCNGC 2 cut(s) 327, 382
GsuI CTGGAG 2 cut(s) 84, 90
HaeII RGCGCY 3 cut(s) 36, 93, 281
HapII CCGG 1 cut(s) 236
HhaI GCGC 3 cut(s) 35, 92, 280
Hin1I GRCGYC 3 cut(s) 33, 278, 289
Hin1II CATG 4 cut(s) 14, 40, 176, 445
Hin6I GCGC 3 cut(s) 33, 90, 278
HinP1I GCGC 3 cut(s) 33, 90, 278
HinfI GANTC 3 cut(s) 267, 307, 370
HpaII CCGG 1 cut(s) 236
Hpy188I TCNGA 3 cut(s) 21, 55, 375
Hpy99I CGWCG 3 cut(s) 291, 455, 458
HpyAV CCTTC 1 cut(s) 78
HpyCH4IV ACGT 3 cut(s) 289, 348, 414
HpyCH4V TGCA 3 cut(s) 176, 329, 365
HpyF10VI GCNNNNNNNGC 2 cut(s) 41, 200
HpyF3I CTNAG 2 cut(s) 297, 342
HpySE526I ACGT 3 cut(s) 289, 348, 414
Hsp92I GRCGYC 3 cut(s) 33, 278, 289
Hsp92II CATG 4 cut(s) 14, 40, 176, 445
HspAI GCGC 3 cut(s) 33, 90, 278
KasI GGCGCC 2 cut(s) 32, 277
Kzo9I GATC 1 cut(s) 55
LmnI GCTCC 5 cut(s) 103, 109, 139, 199, 333
Lsp1109I GCAGC 1 cut(s) 313
MaeII ACGT 3 cut(s) 289, 348, 414
MalI GATC 1 cut(s) 57
MbiI CCGCTC 1 cut(s) 336
MboI GATC 1 cut(s) 55
MboII GAAGA 2 cut(s) 316, 473
MflI RGATCY 1 cut(s) 55
MluCI AATT 1 cut(s) 427
Mly113I GGCGCC 2 cut(s) 33, 278
MlyI GAGTC 1 cut(s) 301
MnlI CCTC 7 cut(s) 150, 153, 237, 240, 243, 273, 451
Mph1103I ATGCAT 1 cut(s) 178
MslI CAYNNNNRTG 1 cut(s) 444
MspI CCGG 1 cut(s) 236
MspR9I CCNGG 3 cut(s) 30, 126, 312
MvaI CCWGG 3 cut(s) 30, 126, 312
MwoI GCNNNNNNNGC 2 cut(s) 41, 200
NarI GGCGCC 2 cut(s) 33, 278
NdeI CATATG 1 cut(s) 214
NdeII GATC 1 cut(s) 55
NlaIII CATG 4 cut(s) 14, 40, 176, 445
NlaIV GGNNCC 3 cut(s) 34, 279, 395
NsiI ATGCAT 1 cut(s) 178
PfeI GAWTC 2 cut(s) 267, 370
PflMI CCANNNNNTGG 1 cut(s) 152
PkrI GCNGC 2 cut(s) 328, 383
PleI GAGTC 1 cut(s) 301
PluTI GGCGCC 2 cut(s) 36, 281
PpsI GAGTC 1 cut(s) 301
PsiI TTATAA 1 cut(s) 243
Psp1406I AACGTT 1 cut(s) 414
Psp6I CCWGG 3 cut(s) 28, 124, 310
PspGI CCWGG 3 cut(s) 28, 124, 310
PspN4I GGNNCC 3 cut(s) 34, 279, 395
PspPI GGNCC 1 cut(s) 394
PsrI GAACNNNNNNTAC 2 cut(s) 338, 370
PsuI RGATCY 1 cut(s) 55
RsaI GTAC 1 cut(s) 74
RsaNI GTAC 1 cut(s) 73
RseI CAYNNNNRTG 1 cut(s) 444
SatI GCNGC 2 cut(s) 327, 382
Sau3AI GATC 1 cut(s) 55
Sau96I GGNCC 1 cut(s) 394
SchI GAGTC 1 cut(s) 301
ScrFI CCNGG 3 cut(s) 30, 126, 312
SetI ASST 8 cut(s) 100, 106, 112, 130, 292, 351, 363, 417
SfoI GGCGCC 2 cut(s) 34, 279
SinI GGWCC 1 cut(s) 394
SmiMI CAYNNNNRTG 1 cut(s) 444
SmlI CTYRAG 2 cut(s) 93, 204
SmoI CTYRAG 2 cut(s) 93, 204
Sse9I AATT 1 cut(s) 427
SsiI CCGC 6 cut(s) 137, 186, 197, 294, 336, 381
SspDI GGCGCC 2 cut(s) 32, 277
StyD4I CCNGG 3 cut(s) 28, 124, 310
StyI CCWWGG 1 cut(s) 321
TaiI ACGT 3 cut(s) 292, 351, 417
TaqI TCGA 2 cut(s) 265, 286
TasI AATT 1 cut(s) 427
TauI GCSGC 1 cut(s) 384
TfiI GAWTC 2 cut(s) 267, 370
TseI GCWGC 1 cut(s) 326
TspDTI ATGAA 1 cut(s) 38
Van91I CCANNNNNTGG 1 cut(s) 152
VpaK11BI GGWCC 1 cut(s) 394
XapI RAATTY 1 cut(s) 427
ZraI GACGTC 1 cut(s) 290
Zsp2I ATGCAT 1 cut(s) 178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.