Rh4CG275800

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0000621
Physical Location & Seq
Reverse (-)
53153318 .. 53154570
1253 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG275800.1

Sequence Viewer

Length: 609 bp
ATGCAGATCAAGCTTGATTATCCAGATGAATATCTGACTTCAATTCACGGATATTACACAGATAGTTGGTACTTCCCTACCTACATTACGTCACTCACTTTCACTAGCAACAGAAAAGTGTACGGACCATATGGAAATTATGACAACGAGGGAAGAAAATATTTCACAATCCAAGTCTGTGGAAGTAAGATCGTTGGGTTCCATGGCAGGTCTGATGAGTGGTTTGATCTTCGTGCATTAGGAGCTTACCTTAAGCTTTTGGTTCATACACAACAATACTCCAACAATATTAGTTCTGCACCAGTTGCTCATATTGGTTATCCGGCTGCGTATAATTATACGCCGCCTCTTCCTCGTCCTCCTCCATATTATGGAAATTACTATAATAATCCCAACCAGCCACCACAGGCTGCTCCACCTGTTCCGACTCCATATCCATATGATCTGAGGCTTGCTGGCACTCTCGATCTCACGACTGTTGATCTGAGTCCTCCGAGTCTCTTGCTAGTGTTCGCACTGCCTTCCCCGGAGGCACATCAAGATCAGATTCCCCCGCCAAGCTTAAGCGTGCGCAAGAGGCCGGAGGACATCCATTGGGATTTGACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jacalin

Protein Analysis

202

Amino Acids

22.99

Weight (kDa)

6.03

Isoelectric Point (pI)

47.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Jacalin PF01419 2 - 83 3.5e-19 Jacalin-like lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000621)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g32560 FvH4_3g35880 FvH4_4g19501 FvH4_4g19530 FvH4_4g19531 FvH4_4g19540 FvH4_4g19540
prunus_persica Prupe.1G121600_v2.0.a1 Prupe.1G121700_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0416301 RchiOBHm_Chr4g0424661
rosa_laevigata RLG00000007388 RLG00000007432 RLG00000007434 RLG00000007435 RLG00000007439 RLG00000007441 RLG00000007442 RLG00000007458 RLG00000007465 RLG00000007997 RLG00000008015 RLG00000008016 RLG00000008017 RLG00000035315
rosa_multiflora Rmu_co8150926.1_g000001 Rmu_co8225682.1_g000001 Rmu_co8296077.1_g000001 Rmu_sc0004841.1_g000022 Rmu_sc0006553.1_g000008 Rmu_sc0008889.1_g000002
rosa_roxburghii Rroxscaffold_1G00030220 Rroxscaffold_2G00114820 Rroxscaffold_3G00219510 Rroxscaffold_3G00255600 Rroxscaffold_4G00304060 Rroxscaffold_4G00330360 Rroxscaffold_4G00330400 Rroxscaffold_5G00359920 Rroxscaffold_5G00359930 Rroxscaffold_5G00359960 Rroxscaffold_5G00366600 Rroxscaffold_5G00366630 Rroxscaffold_5G00366640 Rroxscaffold_5G00366710 Rroxscaffold_5G00366970
rosa_rugosa Rorug04G0138400 Rorug04G0138500 Rorug04G0138700 Rorug04G0140600 Rorug04G0199000 Rorug07G0061600
rosa_samantha Rh4AG255800 Rh4AG255900 Rh4AG256000 Rh4AG256200 Rh4BG261200 Rh4BG261300 Rh4BG261600 Rh4CG212100 Rh4CG212800 Rh4CG212900 Rh4CG272300 Rh4CG272500 Rh4CG272600 Rh4CG272800 Rh4CG275800 Rh4DG255800 Rh4DG255900 Rh4DG256200 Rh4DG257200 Rh4DG257300 Rh7BG190600 Rh7CG198100
rosa_wichuraiana Rw1G001980 Rw4G022090 Rw4G024000 Rw4G024010 Rw7G016430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 572
Acc36I ACCTGC 1 cut(s) 198
AccB7I CCANNNNNTGG 1 cut(s) 371
AciI CCGC 2 cut(s) 344, 554
AfaI GTAC 2 cut(s) 71, 122
AfiI CCNNNNNNNGG 1 cut(s) 371
AflII CTTAAG 2 cut(s) 251, 562
AgsI TTSAA 1 cut(s) 42
AluBI AGCT 4 cut(s) 13, 245, 256, 561
AluI AGCT 4 cut(s) 13, 245, 256, 561
Alw26I GTCTC 1 cut(s) 503
AoxI GGCC 1 cut(s) 578
ApeKI GCWGC 2 cut(s) 326, 410
AspLEI GCGC 1 cut(s) 573
AspS9I GGNCC 1 cut(s) 125
AsuC2I CCSGG 1 cut(s) 527
AvaII GGWCC 1 cut(s) 125
BbvI GCAGC 2 cut(s) 313, 397
BcgI CGANNNNNNTGC 2 cut(s) 484, 518
BcnI CCSGG 1 cut(s) 527
BcoDI GTCTC 1 cut(s) 503
BfaI CTAG 2 cut(s) 105, 506
BfrI CTTAAG 2 cut(s) 251, 562
BfuAI ACCTGC 1 cut(s) 198
BisI GCNGC 3 cut(s) 327, 344, 411
BlsI GCNGC 3 cut(s) 328, 345, 412
Bme1390I CCNGG 1 cut(s) 527
Bme18I GGWCC 1 cut(s) 125
BmgT120I GGNCC 1 cut(s) 125
BmiI GGNNCC 1 cut(s) 200
BmrFI CCNGG 1 cut(s) 527
BpuMI CCSGG 1 cut(s) 527
BsaBI GATNNNNATC 1 cut(s) 30
BsaJI CCNNGG 2 cut(s) 202, 525
Bsc4I CCNNNNNNNGG 1 cut(s) 371
Bse1I ACTGG 1 cut(s) 302
Bse8I GATNNNNATC 1 cut(s) 30
BseDI CCNNGG 2 cut(s) 202, 525
BseGI GGATG 1 cut(s) 588
BseJI GATNNNNATC 1 cut(s) 30
BseLI CCNNNNNNNGG 1 cut(s) 371
BseMII CTCAG 2 cut(s) 437, 476
BseNI ACTGG 1 cut(s) 302
BseRI GAGGAG 1 cut(s) 351
BseXI GCAGC 2 cut(s) 313, 397
BsgI GTGCAG 1 cut(s) 282
BshFI GGCC 1 cut(s) 580
BsiSI CCGG 3 cut(s) 323, 527, 581
BslI CCNNNNNNNGG 1 cut(s) 371
BsmAI GTCTC 1 cut(s) 503
BsnI GGCC 1 cut(s) 580
Bsp143I GATC 7 cut(s) 6, 189, 226, 442, 466, 481, 541
Bsp19I CCATGG 1 cut(s) 202
BspACI CCGC 2 cut(s) 344, 554
BspANI GGCC 1 cut(s) 580
BspCNI CTCAG 2 cut(s) 438, 477
BspLI GGNNCC 1 cut(s) 200
BspMI ACCTGC 1 cut(s) 198
BspTI CTTAAG 2 cut(s) 251, 562
BsrI ACTGG 1 cut(s) 302
BssECI CCNNGG 2 cut(s) 202, 525
BssMI GATC 7 cut(s) 6, 189, 226, 442, 466, 481, 541
BssT1I CCWWGG 1 cut(s) 202
Bst4CI ACNGT 1 cut(s) 478
Bst6I CTCTTC 1 cut(s) 354
BstAFI CTTAAG 2 cut(s) 251, 562
BstAPI GCANNNNNTGC 1 cut(s) 305
BstC8I GCNNGC 3 cut(s) 453, 457, 569
BstDEI CTNAG 2 cut(s) 446, 485
BstDSI CCRYGG 1 cut(s) 202
BstF5I GGATG 1 cut(s) 588
BstHHI GCGC 1 cut(s) 573
BstKTI GATC 7 cut(s) 9, 192, 229, 445, 469, 484, 544
BstMAI GTCTC 1 cut(s) 503
BstMBI GATC 7 cut(s) 6, 189, 226, 442, 466, 481, 541
BstMWI GCNNNNNNNGC 4 cut(s) 10, 242, 305, 577
BstSCI CCNGG 1 cut(s) 525
BstV1I GCAGC 2 cut(s) 313, 397
BstXI CCANNNNNNTGG 1 cut(s) 179
BsuRI GGCC 1 cut(s) 580
BtgI CCRYGG 1 cut(s) 202
BtsCI GGATG 1 cut(s) 588
BtsI GCAGTG 1 cut(s) 515
BtsIMutI CAGTG 1 cut(s) 515
BveI ACCTGC 1 cut(s) 198
Cac8I GCNNGC 3 cut(s) 453, 457, 569
CfoI GCGC 1 cut(s) 573
Cfr13I GGNCC 1 cut(s) 125
Csp6I GTAC 2 cut(s) 70, 121
CviAII CATG 1 cut(s) 203
CviJI RGCY 9 cut(s) 13, 245, 256, 326, 400, 410, 451, 561, 580
CviKI_1 RGCY 9 cut(s) 13, 245, 256, 326, 400, 410, 451, 561, 580
CviQI GTAC 2 cut(s) 70, 121
DdeI CTNAG 2 cut(s) 446, 485
DpnI GATC 7 cut(s) 8, 191, 228, 444, 468, 483, 543
DpnII GATC 7 cut(s) 6, 189, 226, 442, 466, 481, 541
Eam1104I CTCTTC 1 cut(s) 354
EarI CTCTTC 1 cut(s) 354
Eco130I CCWWGG 1 cut(s) 202
Eco47I GGWCC 1 cut(s) 125
EcoT14I CCWWGG 1 cut(s) 202
ErhI CCWWGG 1 cut(s) 202
FaeI CATG 1 cut(s) 206
FatI CATG 1 cut(s) 202
FauI CCCGC 1 cut(s) 561
FauNDI CATATG 2 cut(s) 130, 439
Fnu4HI GCNGC 3 cut(s) 327, 344, 411
FokI GGATG 1 cut(s) 575
Fsp4HI GCNGC 3 cut(s) 327, 344, 411
FspBI CTAG 2 cut(s) 105, 506
FspI TGCGCA 1 cut(s) 572
GlaI GCGC 1 cut(s) 572
GluI GCNGC 3 cut(s) 327, 344, 411
HaeIII GGCC 1 cut(s) 580
HapII CCGG 3 cut(s) 323, 527, 581
HhaI GCGC 1 cut(s) 573
Hin1II CATG 1 cut(s) 206
Hin6I GCGC 1 cut(s) 571
HinP1I GCGC 1 cut(s) 571
HindIII AAGCTT 3 cut(s) 11, 254, 559
HinfI GANTC 4 cut(s) 427, 487, 496, 547
HpaII CCGG 3 cut(s) 323, 527, 581
Hpy166II GTNNAC 1 cut(s) 121
Hpy188I TCNGA 7 cut(s) 36, 214, 426, 447, 486, 495, 546
Hpy188III TCNNGA 4 cut(s) 23, 464, 472, 539
Hpy8I GTNNAC 1 cut(s) 121
HpyAV CCTTC 1 cut(s) 531
HpyCH4III ACNGT 1 cut(s) 478
HpyCH4IV ACGT 1 cut(s) 89
HpyCH4V TGCA 3 cut(s) 4, 236, 299
HpyF10VI GCNNNNNNNGC 4 cut(s) 10, 242, 305, 577
HpyF3I CTNAG 2 cut(s) 446, 485
HpySE526I ACGT 1 cut(s) 89
Hsp92II CATG 1 cut(s) 206
HspAI GCGC 1 cut(s) 571
Kzo9I GATC 7 cut(s) 6, 189, 226, 442, 466, 481, 541
LmnI GCTCC 2 cut(s) 242, 418
Lsp1109I GCAGC 2 cut(s) 313, 397
MaeI CTAG 2 cut(s) 105, 506
MaeII ACGT 1 cut(s) 89
MaeIII GTNAC 1 cut(s) 90
MalI GATC 7 cut(s) 8, 191, 228, 444, 468, 483, 543
MboI GATC 7 cut(s) 6, 189, 226, 442, 466, 481, 541
MboII GAAGA 3 cut(s) 165, 221, 341
MluCI AATT 4 cut(s) 42, 136, 334, 376
MlyI GAGTC 3 cut(s) 421, 496, 505
MmeI TCCRAC 2 cut(s) 306, 449
MseI TTAA 2 cut(s) 252, 563
MspCI CTTAAG 2 cut(s) 251, 562
MspI CCGG 3 cut(s) 323, 527, 581
MspR9I CCNGG 1 cut(s) 527
MwoI GCNNNNNNNGC 4 cut(s) 10, 242, 305, 577
NciI CCSGG 1 cut(s) 527
NcoI CCATGG 1 cut(s) 202
NdeI CATATG 2 cut(s) 130, 439
NdeII GATC 7 cut(s) 6, 189, 226, 442, 466, 481, 541
NlaIII CATG 1 cut(s) 206
NlaIV GGNNCC 1 cut(s) 200
NmuCI GTSAC 1 cut(s) 90
NsbI TGCGCA 1 cut(s) 572
PfeI GAWTC 1 cut(s) 547
PflMI CCANNNNNTGG 1 cut(s) 371
PkrI GCNGC 3 cut(s) 328, 345, 412
PleI GAGTC 3 cut(s) 421, 495, 504
PpsI GAGTC 3 cut(s) 421, 495, 504
PspN4I GGNNCC 1 cut(s) 200
PspPI GGNCC 1 cut(s) 125
RsaI GTAC 2 cut(s) 71, 122
RsaNI GTAC 2 cut(s) 70, 121
SaqAI TTAA 2 cut(s) 252, 563
SatI GCNGC 3 cut(s) 327, 344, 411
Sau3AI GATC 7 cut(s) 6, 189, 226, 442, 466, 481, 541
Sau96I GGNCC 1 cut(s) 125
SchI GAGTC 3 cut(s) 421, 496, 505
ScrFI CCNGG 1 cut(s) 527
SetI ASST 9 cut(s) 15, 83, 92, 212, 247, 252, 258, 421, 563
SinI GGWCC 1 cut(s) 125
SmlI CTYRAG 2 cut(s) 251, 562
SmoI CTYRAG 2 cut(s) 251, 562
Sse9I AATT 4 cut(s) 42, 136, 334, 376
SsiI CCGC 2 cut(s) 344, 554
SspI AATATT 2 cut(s) 161, 289
SspMI CTAG 2 cut(s) 105, 506
StyD4I CCNGG 1 cut(s) 525
StyI CCWWGG 1 cut(s) 202
TaaI ACNGT 1 cut(s) 478
TaiI ACGT 1 cut(s) 92
TaqI TCGA 1 cut(s) 465
TasI AATT 4 cut(s) 42, 136, 334, 376
TauI GCSGC 1 cut(s) 346
TfiI GAWTC 1 cut(s) 547
Tru1I TTAA 2 cut(s) 252, 563
Tru9I TTAA 2 cut(s) 252, 563
TscAI CASTG 1 cut(s) 522
TseFI GTSAC 1 cut(s) 90
TseI GCWGC 2 cut(s) 326, 410
Tsp45I GTSAC 1 cut(s) 90
TspDTI ATGAA 2 cut(s) 42, 254
TspGWI ACGGA 2 cut(s) 63, 138
TspRI CASTG 1 cut(s) 522
Van91I CCANNNNNTGG 1 cut(s) 371
Vha464I CTTAAG 2 cut(s) 251, 562
VpaK11BI GGWCC 1 cut(s) 125
XspI CTAG 2 cut(s) 105, 506
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.