Rroxscaffold_5G00366630

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000621
Physical Location & Seq
Reverse (-)
48573888 .. 48574328
441 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00366630.1

Sequence Viewer

Length: 441 bp
ATGTCACATTATCCTCAGATGATGAACCCCGGCGCCATGTTCGCCAATGGTTCTGATCAGAATAAGCCTTCATATAATCCCAACTTTGGGGCTCCTGCACCATTTGCTCATAATGGATATCCAAGTTACAATAATTATGCACATCCTCCTCAACCTCATGGTTACTATAACAACCAATACCCATCACAGTCAGCTCCTGATCCTGCTGCTCATACTCCCTATGGTGGATATAGCAACCATTTCGCTCCTCCATCTTACTACGATCCAGTCTCACAGGCGCCTGTTGCGCCTCAGTATCCTAGTAAGCTCAGGAGCACTAAAGGTAGCAAAAGAACATCTTACAATGTTTCTGGGAATCGAGTCAGCGGAAACAAAGGAGACCATAATGGAGTTTTCAACATTGGCAACAAGAATACTCGTTACAACGATGAAGAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jacalin

Protein Analysis

146

Amino Acids

16.06

Weight (kDa)

8.71

Isoelectric Point (pI)

61.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000621)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g32560 FvH4_3g35880 FvH4_4g19501 FvH4_4g19530 FvH4_4g19531 FvH4_4g19540 FvH4_4g19540
prunus_persica Prupe.1G121600_v2.0.a1 Prupe.1G121700_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0416301 RchiOBHm_Chr4g0424661
rosa_laevigata RLG00000007388 RLG00000007432 RLG00000007434 RLG00000007435 RLG00000007439 RLG00000007441 RLG00000007442 RLG00000007458 RLG00000007465 RLG00000007997 RLG00000008015 RLG00000008016 RLG00000008017 RLG00000035315
rosa_multiflora Rmu_co8150926.1_g000001 Rmu_co8225682.1_g000001 Rmu_co8296077.1_g000001 Rmu_sc0004841.1_g000022 Rmu_sc0006553.1_g000008 Rmu_sc0008889.1_g000002
rosa_roxburghii Rroxscaffold_1G00030220 Rroxscaffold_2G00114820 Rroxscaffold_3G00219510 Rroxscaffold_3G00255600 Rroxscaffold_4G00304060 Rroxscaffold_4G00330360 Rroxscaffold_4G00330400 Rroxscaffold_5G00359920 Rroxscaffold_5G00359930 Rroxscaffold_5G00359960 Rroxscaffold_5G00366600 Rroxscaffold_5G00366630 Rroxscaffold_5G00366640 Rroxscaffold_5G00366710 Rroxscaffold_5G00366970
rosa_rugosa Rorug04G0138400 Rorug04G0138500 Rorug04G0138700 Rorug04G0140600 Rorug04G0199000 Rorug07G0061600
rosa_samantha Rh4AG255800 Rh4AG255900 Rh4AG256000 Rh4AG256200 Rh4BG261200 Rh4BG261300 Rh4BG261600 Rh4CG212100 Rh4CG212800 Rh4CG212900 Rh4CG272300 Rh4CG272500 Rh4CG272600 Rh4CG272800 Rh4CG275800 Rh4DG255800 Rh4DG255900 Rh4DG256200 Rh4DG257200 Rh4DG257300 Rh7BG190600 Rh7CG198100
rosa_wichuraiana Rw1G001980 Rw4G022090 Rw4G024000 Rw4G024010 Rw7G016430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 32, 277
AciI CCGC 1 cut(s) 366
AclWI GGATC 2 cut(s) 194, 257
AcyI GRCGYC 2 cut(s) 33, 278
AfiI CCNNNNNNNGG 3 cut(s) 86, 87, 224
AgsI TTSAA 1 cut(s) 397
AluBI AGCT 2 cut(s) 194, 307
AluI AGCT 2 cut(s) 194, 307
Alw21I GWGCWC 1 cut(s) 317
Alw26I GTCTC 2 cut(s) 274, 372
AlwI GGATC 2 cut(s) 194, 257
AlwNI CAGNNNCTG 1 cut(s) 197
ApeKI GCWGC 1 cut(s) 206
AspLEI GCGC 3 cut(s) 35, 280, 289
AsuC2I CCSGG 1 cut(s) 30
BanI GGYRCC 2 cut(s) 32, 277
BanII GRGCYC 1 cut(s) 94
Bbv12I GWGCWC 1 cut(s) 317
BbvI GCAGC 1 cut(s) 193
BccI CCATC 2 cut(s) 190, 259
BcgI CGANNNNNNTGC 2 cut(s) 223, 257
BciVI GTATCC 1 cut(s) 306
BclI TGATCA 1 cut(s) 55
BcnI CCSGG 1 cut(s) 30
BcoDI GTCTC 2 cut(s) 274, 372
BfaI CTAG 1 cut(s) 300
BfoI RGCGCY 2 cut(s) 36, 281
BfuI GTATCC 1 cut(s) 306
BisI GCNGC 1 cut(s) 207
BlsI GCNGC 1 cut(s) 208
Bme1390I CCNGG 1 cut(s) 30
BmiI GGNNCC 3 cut(s) 34, 93, 279
BmrFI CCNGG 1 cut(s) 30
Bpu10I CCTNAGC 1 cut(s) 308
BpuMI CCSGG 1 cut(s) 30
BsaHI GRCGYC 2 cut(s) 33, 278
BsaI GGTCTC 1 cut(s) 372
BsaJI CCNNGG 1 cut(s) 28
Bsc4I CCNNNNNNNGG 3 cut(s) 86, 87, 224
Bse1I ACTGG 1 cut(s) 266
BseDI CCNNGG 1 cut(s) 28
BseGI GGATG 1 cut(s) 142
BseLI CCNNNNNNNGG 3 cut(s) 86, 87, 224
BseMII CTCAG 3 cut(s) 29, 305, 322
BseNI ACTGG 1 cut(s) 266
BseRI GAGGAG 2 cut(s) 138, 237
BseXI GCAGC 1 cut(s) 193
BsgI GTGCAG 1 cut(s) 81
BshNI GGYRCC 2 cut(s) 32, 277
BsiHKAI GWGCWC 1 cut(s) 317
BsiSI CCGG 1 cut(s) 30
BslI CCNNNNNNNGG 3 cut(s) 86, 87, 224
BsmAI GTCTC 2 cut(s) 274, 372
Bso31I GGTCTC 1 cut(s) 372
Bsp1286I GDGCHC 2 cut(s) 94, 317
Bsp143I GATC 3 cut(s) 55, 199, 262
BspACI CCGC 1 cut(s) 366
BspCNI CTCAG 3 cut(s) 28, 304, 321
BspLI GGNNCC 3 cut(s) 34, 93, 279
BspPI GGATC 2 cut(s) 194, 257
BspT107I GGYRCC 2 cut(s) 32, 277
BspTNI GGTCTC 1 cut(s) 372
BsrI ACTGG 1 cut(s) 266
BssECI CCNNGG 1 cut(s) 28
BssMI GATC 3 cut(s) 55, 199, 262
BssNI GRCGYC 2 cut(s) 33, 278
Bst4CI ACNGT 1 cut(s) 189
BstACI GRCGYC 2 cut(s) 33, 278
BstAPI GCANNNNNTGC 1 cut(s) 104
BstDEI CTNAG 3 cut(s) 15, 291, 308
BstF5I GGATG 1 cut(s) 142
BstH2I RGCGCY 2 cut(s) 36, 281
BstHHI GCGC 3 cut(s) 35, 280, 289
BstKTI GATC 3 cut(s) 58, 202, 265
BstMAI GTCTC 2 cut(s) 274, 372
BstMBI GATC 3 cut(s) 55, 199, 262
BstMWI GCNNNNNNNGC 4 cut(s) 41, 104, 284, 286
BstSCI CCNGG 1 cut(s) 28
BstV1I GCAGC 1 cut(s) 193
BsuI GTATCC 1 cut(s) 306
BtsCI GGATG 1 cut(s) 142
CaiI CAGNNNCTG 1 cut(s) 197
CfoI GCGC 3 cut(s) 35, 280, 289
CviAII CATG 2 cut(s) 37, 158
CviJI RGCY 4 cut(s) 67, 92, 194, 307
CviKI_1 RGCY 4 cut(s) 67, 92, 194, 307
DdeI CTNAG 3 cut(s) 15, 291, 308
DinI GGCGCC 2 cut(s) 34, 279
DpnI GATC 3 cut(s) 57, 201, 264
DpnII GATC 3 cut(s) 55, 199, 262
Eco24I GRGCYC 1 cut(s) 94
Eco31I GGTCTC 1 cut(s) 372
Eco32I GATATC 1 cut(s) 119
EcoRV GATATC 1 cut(s) 119
EcoT38I GRGCYC 1 cut(s) 94
EgeI GGCGCC 2 cut(s) 34, 279
EheI GGCGCC 2 cut(s) 34, 279
FaeI CATG 2 cut(s) 40, 161
FalI AAGNNNNNCTT 2 cut(s) 322, 354
FatI CATG 2 cut(s) 36, 157
FbaI TGATCA 1 cut(s) 55
Fnu4HI GCNGC 1 cut(s) 207
FokI GGATG 1 cut(s) 129
FriOI GRGCYC 1 cut(s) 94
Fsp4HI GCNGC 1 cut(s) 207
FspBI CTAG 1 cut(s) 300
GlaI GCGC 3 cut(s) 34, 279, 288
GluI GCNGC 1 cut(s) 207
HaeII RGCGCY 2 cut(s) 36, 281
HapII CCGG 1 cut(s) 30
HhaI GCGC 3 cut(s) 35, 280, 289
Hin1I GRCGYC 2 cut(s) 33, 278
Hin1II CATG 2 cut(s) 40, 161
Hin6I GCGC 3 cut(s) 33, 278, 287
HinP1I GCGC 3 cut(s) 33, 278, 287
HinfI GANTC 2 cut(s) 355, 360
HpaII CCGG 1 cut(s) 30
Hpy188I TCNGA 3 cut(s) 18, 55, 60
Hpy188III TCNNGA 2 cut(s) 197, 310
HpyAV CCTTC 1 cut(s) 78
HpyCH4III ACNGT 1 cut(s) 189
HpyCH4V TGCA 2 cut(s) 98, 140
HpyF10VI GCNNNNNNNGC 4 cut(s) 41, 104, 284, 286
HpyF3I CTNAG 3 cut(s) 15, 291, 308
Hsp92I GRCGYC 2 cut(s) 33, 278
Hsp92II CATG 2 cut(s) 40, 161
HspAI GCGC 3 cut(s) 33, 278, 287
KasI GGCGCC 2 cut(s) 32, 277
Ksp22I TGATCA 1 cut(s) 55
Kzo9I GATC 3 cut(s) 55, 199, 262
LmnI GCTCC 4 cut(s) 97, 199, 250, 312
LpnPI CCDG 9 cut(s) 43, 108, 210, 216, 260, 279, 294, 295, 336
Lsp1109I GCAGC 1 cut(s) 193
MaeI CTAG 1 cut(s) 300
MaeIII GTNAC 4 cut(s) 3, 125, 161, 419
MalI GATC 3 cut(s) 57, 201, 264
MboI GATC 3 cut(s) 55, 199, 262
MhlI GDGCHC 2 cut(s) 94, 317
MluCI AATT 1 cut(s) 133
Mly113I GGCGCC 2 cut(s) 33, 278
MlyI GAGTC 1 cut(s) 369
MnlI CCTC 6 cut(s) 24, 156, 159, 165, 258, 300
MspA1I CMGCKG 1 cut(s) 366
MspI CCGG 1 cut(s) 30
MspR9I CCNGG 1 cut(s) 30
MwoI GCNNNNNNNGC 4 cut(s) 41, 104, 284, 286
NarI GGCGCC 2 cut(s) 33, 278
NciI CCSGG 1 cut(s) 30
NdeII GATC 3 cut(s) 55, 199, 262
NlaIII CATG 2 cut(s) 40, 161
NlaIV GGNNCC 3 cut(s) 34, 93, 279
NmuCI GTSAC 1 cut(s) 3
PfeI GAWTC 1 cut(s) 355
PkrI GCNGC 1 cut(s) 208
PleI GAGTC 1 cut(s) 368
PluTI GGCGCC 2 cut(s) 36, 281
PpsI GAGTC 1 cut(s) 368
PspN4I GGNNCC 3 cut(s) 34, 93, 279
PstNI CAGNNNCTG 1 cut(s) 197
SatI GCNGC 1 cut(s) 207
Sau3AI GATC 3 cut(s) 55, 199, 262
SchI GAGTC 1 cut(s) 369
ScrFI CCNGG 1 cut(s) 30
SduI GDGCHC 2 cut(s) 94, 317
SetI ASST 4 cut(s) 157, 196, 309, 325
SfoI GGCGCC 2 cut(s) 34, 279
Sse9I AATT 1 cut(s) 133
SsiI CCGC 1 cut(s) 366
SspDI GGCGCC 2 cut(s) 32, 277
SspMI CTAG 1 cut(s) 300
StyD4I CCNGG 1 cut(s) 28
TaaI ACNGT 1 cut(s) 189
TaqI TCGA 1 cut(s) 358
TasI AATT 1 cut(s) 133
TfiI GAWTC 1 cut(s) 355
TseFI GTSAC 1 cut(s) 3
TseI GCWGC 1 cut(s) 206
Tsp45I GTSAC 1 cut(s) 3
TspDTI ATGAA 2 cut(s) 38, 60
XspI CTAG 1 cut(s) 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.