Rorug04G0199000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000621
Physical Location & Seq
Forward (+)
34635801 .. 34636016
216 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0199000.1

Sequence Viewer

Length: 216 bp
ATGGCTTACCCATCGGCCTCCTCCCCAAAGGCATCACAGAATATTCCCTCAACGATTTCAGCGGCAAATTCCGGGTGTTTCTGCCCCAGCCTTGCCGCGCCAAGTTCGAGAATCAGGTCCGGTACGATTTCAACGTCTCCGGGACTCACACTTTCGGCCGAATCGCCGACTTGTCCGGCGTCTCGGCTCAGGATCTCTTCCTTTGGTTTCCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

71

Amino Acids

7.17

Weight (kDa)

9.61

Isoelectric Point (pI)

86.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000621)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g32560 FvH4_3g35880 FvH4_4g19501 FvH4_4g19530 FvH4_4g19531 FvH4_4g19540 FvH4_4g19540
prunus_persica Prupe.1G121600_v2.0.a1 Prupe.1G121700_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0416301 RchiOBHm_Chr4g0424661
rosa_laevigata RLG00000007388 RLG00000007432 RLG00000007434 RLG00000007435 RLG00000007439 RLG00000007441 RLG00000007442 RLG00000007458 RLG00000007465 RLG00000007997 RLG00000008015 RLG00000008016 RLG00000008017 RLG00000035315
rosa_multiflora Rmu_co8150926.1_g000001 Rmu_co8225682.1_g000001 Rmu_co8296077.1_g000001 Rmu_sc0004841.1_g000022 Rmu_sc0006553.1_g000008 Rmu_sc0008889.1_g000002
rosa_roxburghii Rroxscaffold_1G00030220 Rroxscaffold_2G00114820 Rroxscaffold_3G00219510 Rroxscaffold_3G00255600 Rroxscaffold_4G00304060 Rroxscaffold_4G00330360 Rroxscaffold_4G00330400 Rroxscaffold_5G00359920 Rroxscaffold_5G00359930 Rroxscaffold_5G00359960 Rroxscaffold_5G00366600 Rroxscaffold_5G00366630 Rroxscaffold_5G00366640 Rroxscaffold_5G00366710 Rroxscaffold_5G00366970
rosa_rugosa Rorug04G0138400 Rorug04G0138500 Rorug04G0138700 Rorug04G0140600 Rorug04G0199000 Rorug07G0061600
rosa_samantha Rh4AG255800 Rh4AG255900 Rh4AG256000 Rh4AG256200 Rh4BG261200 Rh4BG261300 Rh4BG261600 Rh4CG212100 Rh4CG212800 Rh4CG212900 Rh4CG272300 Rh4CG272500 Rh4CG272600 Rh4CG272800 Rh4CG275800 Rh4DG255800 Rh4DG255900 Rh4DG256200 Rh4DG257200 Rh4DG257300 Rh7BG190600 Rh7CG198100
rosa_wichuraiana Rw1G001980 Rw4G022090 Rw4G024000 Rw4G024010 Rw7G016430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 98
AciI CCGC 2 cut(s) 62, 96
AclWI GGATC 1 cut(s) 200
AcoI YGGCCR 1 cut(s) 156
AcsI RAATTY 1 cut(s) 67
AcyI GRCGYC 1 cut(s) 179
AfaI GTAC 1 cut(s) 124
AgsI TTSAA 1 cut(s) 132
Alw26I GTCTC 2 cut(s) 141, 186
AlwI GGATC 1 cut(s) 200
AoxI GGCC 2 cut(s) 15, 156
ApoI RAATTY 1 cut(s) 67
AspLEI GCGC 1 cut(s) 100
AspS9I GGNCC 1 cut(s) 117
AsuC2I CCSGG 2 cut(s) 73, 141
AvaII GGWCC 1 cut(s) 117
BccI CCATC 1 cut(s) 19
BcnI CCSGG 2 cut(s) 73, 141
BcoDI GTCTC 2 cut(s) 141, 186
BisI GCNGC 2 cut(s) 63, 96
BlsI GCNGC 2 cut(s) 64, 97
Bme1390I CCNGG 2 cut(s) 73, 141
Bme18I GGWCC 1 cut(s) 117
BmgT120I GGNCC 1 cut(s) 117
BmrFI CCNGG 2 cut(s) 73, 141
BmsI GCATC 1 cut(s) 41
Bpu10I CCTNAGC 1 cut(s) 188
BpuMI CCSGG 2 cut(s) 73, 141
BsaHI GRCGYC 1 cut(s) 179
BsaWI WCCGGW 1 cut(s) 119
Bse1I ACTGG 1 cut(s) 211
BseMII CTCAG 1 cut(s) 202
BseNI ACTGG 1 cut(s) 211
BseRI GAGGAG 1 cut(s) 10
BseX3I CGGCCG 1 cut(s) 156
BseYI CCCAGC 1 cut(s) 86
Bsh1236I CGCG 1 cut(s) 98
Bsh1285I CGRYCG 1 cut(s) 159
BshFI GGCC 2 cut(s) 17, 158
BsiEI CGRYCG 1 cut(s) 159
BsiSI CCGG 4 cut(s) 72, 120, 140, 176
BslFI GGGAC 1 cut(s) 156
BsmAI GTCTC 2 cut(s) 141, 186
BsmBI CGTCTC 2 cut(s) 141, 186
BsmFI GGGAC 1 cut(s) 156
BsnI GGCC 2 cut(s) 17, 158
Bsp143I GATC 1 cut(s) 192
BspACI CCGC 2 cut(s) 62, 96
BspANI GGCC 2 cut(s) 17, 158
BspCNI CTCAG 1 cut(s) 201
BspFNI CGCG 1 cut(s) 98
BspPI GGATC 1 cut(s) 200
BsrI ACTGG 1 cut(s) 211
BssMI GATC 1 cut(s) 192
BssNI GRCGYC 1 cut(s) 179
Bst6I CTCTTC 1 cut(s) 202
BstACI GRCGYC 1 cut(s) 179
BstDEI CTNAG 1 cut(s) 188
BstFNI CGCG 1 cut(s) 98
BstHHI GCGC 1 cut(s) 100
BstKTI GATC 1 cut(s) 195
BstMAI GTCTC 2 cut(s) 141, 186
BstMBI GATC 1 cut(s) 192
BstMCI CGRYCG 1 cut(s) 159
BstSCI CCNGG 2 cut(s) 71, 139
BstUI CGCG 1 cut(s) 98
BstX2I RGATCY 1 cut(s) 192
BstYI RGATCY 1 cut(s) 192
BstZI CGGCCG 1 cut(s) 156
BsuRI GGCC 2 cut(s) 17, 158
CfoI GCGC 1 cut(s) 100
Cfr13I GGNCC 1 cut(s) 117
CseI GACGC 1 cut(s) 168
Csp6I GTAC 1 cut(s) 123
CviJI RGCY 5 cut(s) 5, 17, 90, 158, 187
CviKI_1 RGCY 5 cut(s) 5, 17, 90, 158, 187
CviQI GTAC 1 cut(s) 123
DdeI CTNAG 1 cut(s) 188
DpnI GATC 1 cut(s) 194
DpnII GATC 1 cut(s) 192
EaeI YGGCCR 1 cut(s) 156
EagI CGGCCG 1 cut(s) 156
Eam1104I CTCTTC 1 cut(s) 202
EarI CTCTTC 1 cut(s) 202
EclXI CGGCCG 1 cut(s) 156
Eco47I GGWCC 1 cut(s) 117
Eco52I CGGCCG 1 cut(s) 156
Esp3I CGTCTC 2 cut(s) 141, 186
FaqI GGGAC 1 cut(s) 156
Fnu4HI GCNGC 2 cut(s) 63, 96
Fsp4HI GCNGC 2 cut(s) 63, 96
GlaI GCGC 1 cut(s) 99
GluI GCNGC 2 cut(s) 63, 96
GsaI CCCAGC 1 cut(s) 90
HaeIII GGCC 2 cut(s) 17, 158
HapII CCGG 4 cut(s) 72, 120, 140, 176
HgaI GACGC 1 cut(s) 168
HhaI GCGC 1 cut(s) 100
Hin1I GRCGYC 1 cut(s) 179
Hin6I GCGC 1 cut(s) 98
HinP1I GCGC 1 cut(s) 98
HinfI GANTC 3 cut(s) 111, 144, 161
HpaII CCGG 4 cut(s) 72, 120, 140, 176
Hpy188III TCNNGA 2 cut(s) 108, 190
HpyCH4IV ACGT 1 cut(s) 134
HpyF3I CTNAG 1 cut(s) 188
HpySE526I ACGT 1 cut(s) 134
Hsp92I GRCGYC 1 cut(s) 179
HspAI GCGC 1 cut(s) 98
Kzo9I GATC 1 cut(s) 192
LpnPI CCDG 7 cut(s) 85, 100, 100, 133, 153, 175, 189
LweI GCATC 1 cut(s) 41
MaeII ACGT 1 cut(s) 134
MalI GATC 1 cut(s) 194
MboI GATC 1 cut(s) 192
MboII GAAGA 1 cut(s) 189
MflI RGATCY 1 cut(s) 192
MluCI AATT 1 cut(s) 67
MlyI GAGTC 1 cut(s) 138
MnlI CCTC 3 cut(s) 28, 31, 58
MspA1I CMGCKG 1 cut(s) 62
MspI CCGG 4 cut(s) 72, 120, 140, 176
MspR9I CCNGG 2 cut(s) 73, 141
MvnI CGCG 1 cut(s) 98
NciI CCSGG 2 cut(s) 73, 141
NdeII GATC 1 cut(s) 192
NmeAIII GCCGAG 1 cut(s) 163
PcsI WCGNNNNNNNCGW 1 cut(s) 131
PfeI GAWTC 2 cut(s) 111, 161
PfoI TCCNGGA 1 cut(s) 139
PkrI GCNGC 2 cut(s) 64, 97
PleI GAGTC 1 cut(s) 138
PpsI GAGTC 1 cut(s) 138
PspFI CCCAGC 1 cut(s) 86
PspPI GGNCC 1 cut(s) 117
PsuI RGATCY 1 cut(s) 192
RsaI GTAC 1 cut(s) 124
RsaNI GTAC 1 cut(s) 123
SatI GCNGC 2 cut(s) 63, 96
Sau3AI GATC 1 cut(s) 192
Sau96I GGNCC 1 cut(s) 117
SchI GAGTC 1 cut(s) 138
ScrFI CCNGG 2 cut(s) 73, 141
SetI ASST 2 cut(s) 119, 137
SfaNI GCATC 1 cut(s) 41
SinI GGWCC 1 cut(s) 117
Sse9I AATT 1 cut(s) 67
SsiI CCGC 2 cut(s) 62, 96
SspI AATATT 1 cut(s) 43
StyD4I CCNGG 2 cut(s) 71, 139
TaiI ACGT 1 cut(s) 137
TaqI TCGA 1 cut(s) 107
TasI AATT 1 cut(s) 67
TauI GCSGC 2 cut(s) 65, 98
TfiI GAWTC 2 cut(s) 111, 161
VpaK11BI GGWCC 1 cut(s) 117
XapI RAATTY 1 cut(s) 67
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.