Rh4CG212800

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0000621
Physical Location & Seq
Forward (+)
44302546 .. 44304333
1788 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG212800.1

Sequence Viewer

Length: 411 bp
ATGAGTTTGAAGGATTATTCTGGTGAGAAAATACTGTGGAAGCTTGGGCCCCTTGGATCAGAAAGCGGAGGGCAAAGTTTTGATGATGGAGCTCATTCAACAGTCAGGCAGTTGGTGATATCTCATTGTCCAGCGGGCGTTTGCTCCATCCAGATTGAATATGATGACAACGGGAGCTCATTTTGGTTAGACCAGCATGGTGATCAGATATGGTCTGACCATATTGACACGATCAAGCTTGATTATCCGTACGAATATTTGATTTCAGTTCATGGAACATATTTTAAGCTCTGCCCTTGCCTACCAATATTTGCTCCCTTACTTTTAGGAGCAACAAGAAAAGTTACGGACCATATGGAAATGAAGACCAGCAGGATAAGTATTTTTCAATCCAATCACCTGGGAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jacalin

Protein Analysis

136

Amino Acids

15.23

Weight (kDa)

5.5

Isoelectric Point (pI)

35.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Jacalin PF01419 15 - 96 1.8e-16 Jacalin-like lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000621)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g32560 FvH4_3g35880 FvH4_4g19501 FvH4_4g19530 FvH4_4g19531 FvH4_4g19540 FvH4_4g19540
prunus_persica Prupe.1G121600_v2.0.a1 Prupe.1G121700_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0416301 RchiOBHm_Chr4g0424661
rosa_laevigata RLG00000007388 RLG00000007432 RLG00000007434 RLG00000007435 RLG00000007439 RLG00000007441 RLG00000007442 RLG00000007458 RLG00000007465 RLG00000007997 RLG00000008015 RLG00000008016 RLG00000008017 RLG00000035315
rosa_multiflora Rmu_co8150926.1_g000001 Rmu_co8225682.1_g000001 Rmu_co8296077.1_g000001 Rmu_sc0004841.1_g000022 Rmu_sc0006553.1_g000008 Rmu_sc0008889.1_g000002
rosa_roxburghii Rroxscaffold_1G00030220 Rroxscaffold_2G00114820 Rroxscaffold_3G00219510 Rroxscaffold_3G00255600 Rroxscaffold_4G00304060 Rroxscaffold_4G00330360 Rroxscaffold_4G00330400 Rroxscaffold_5G00359920 Rroxscaffold_5G00359930 Rroxscaffold_5G00359960 Rroxscaffold_5G00366600 Rroxscaffold_5G00366630 Rroxscaffold_5G00366640 Rroxscaffold_5G00366710 Rroxscaffold_5G00366970
rosa_rugosa Rorug04G0138400 Rorug04G0138500 Rorug04G0138700 Rorug04G0140600 Rorug04G0199000 Rorug07G0061600
rosa_samantha Rh4AG255800 Rh4AG255900 Rh4AG256000 Rh4AG256200 Rh4BG261200 Rh4BG261300 Rh4BG261600 Rh4CG212100 Rh4CG212800 Rh4CG212900 Rh4CG272300 Rh4CG272500 Rh4CG272600 Rh4CG272800 Rh4CG275800 Rh4DG255800 Rh4DG255900 Rh4DG256200 Rh4DG257200 Rh4DG257300 Rh7BG190600 Rh7CG198100
rosa_wichuraiana Rw1G001980 Rw4G022090 Rw4G024000 Rw4G024010 Rw7G016430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 66, 134
AclWI GGATC 1 cut(s) 64
AfaI GTAC 1 cut(s) 251
AgsI TTSAA 4 cut(s) 10, 99, 158, 389
AjnI CCWGG 1 cut(s) 399
AluBI AGCT 5 cut(s) 43, 92, 177, 238, 289
AluI AGCT 5 cut(s) 43, 92, 177, 238, 289
Alw21I GWGCWC 2 cut(s) 94, 179
AlwI GGATC 1 cut(s) 64
AoxI GGCC 1 cut(s) 47
ApaI GGGCCC 1 cut(s) 51
AspS9I GGNCC 3 cut(s) 47, 48, 349
AsuHPI GGTGA 4 cut(s) 35, 127, 212, 389
AvaII GGWCC 1 cut(s) 349
BaeGI GKGCMC 1 cut(s) 51
BanII GRGCYC 3 cut(s) 51, 94, 179
BbsI GAAGAC 1 cut(s) 371
Bbv12I GWGCWC 2 cut(s) 94, 179
BccI CCATC 2 cut(s) 80, 155
BciT130I CCWGG 1 cut(s) 401
BclI TGATCA 1 cut(s) 202
Bme1390I CCNGG 1 cut(s) 401
Bme18I GGWCC 1 cut(s) 349
BmgT120I GGNCC 3 cut(s) 47, 48, 349
BmiI GGNNCC 2 cut(s) 49, 50
BmrFI CCNGG 1 cut(s) 401
BpiI GAAGAC 1 cut(s) 371
BsaJI CCNNGG 2 cut(s) 52, 400
BseBI CCWGG 1 cut(s) 401
BseDI CCNNGG 2 cut(s) 52, 400
BseGI GGATG 1 cut(s) 147
BseSI GKGCMC 1 cut(s) 51
BshFI GGCC 1 cut(s) 49
BsiHKAI GWGCWC 2 cut(s) 94, 179
BsiWI CGTACG 1 cut(s) 249
BsnI GGCC 1 cut(s) 49
Bsp120I GGGCCC 1 cut(s) 47
Bsp1286I GDGCHC 3 cut(s) 51, 94, 179
Bsp143I GATC 3 cut(s) 56, 202, 231
BspACI CCGC 2 cut(s) 66, 134
BspANI GGCC 1 cut(s) 49
BspLI GGNNCC 2 cut(s) 49, 50
BspPI GGATC 1 cut(s) 64
BssECI CCNNGG 2 cut(s) 52, 400
BssMI GATC 3 cut(s) 56, 202, 231
BssT1I CCWWGG 1 cut(s) 52
Bst2UI CCWGG 1 cut(s) 401
Bst4CI ACNGT 2 cut(s) 36, 103
BstC8I GCNNGC 1 cut(s) 136
BstF5I GGATG 1 cut(s) 147
BstKTI GATC 3 cut(s) 59, 205, 234
BstMBI GATC 3 cut(s) 56, 202, 231
BstNI CCWGG 1 cut(s) 401
BstSCI CCNGG 1 cut(s) 399
BstSLI GKGCMC 1 cut(s) 51
BstV2I GAAGAC 1 cut(s) 371
BstXI CCANNNNNNTGG 1 cut(s) 400
BsuRI GGCC 1 cut(s) 49
BtsCI GGATG 1 cut(s) 147
Cac8I GCNNGC 1 cut(s) 136
Cfr13I GGNCC 3 cut(s) 47, 48, 349
Csp6I GTAC 1 cut(s) 250
CviAII CATG 2 cut(s) 197, 272
CviJI RGCY 6 cut(s) 43, 49, 92, 177, 238, 289
CviKI_1 RGCY 6 cut(s) 43, 49, 92, 177, 238, 289
CviQI GTAC 1 cut(s) 250
DpnI GATC 3 cut(s) 58, 204, 233
DpnII GATC 3 cut(s) 56, 202, 231
Ecl136II GAGCTC 2 cut(s) 92, 177
Eco130I CCWWGG 1 cut(s) 52
Eco24I GRGCYC 3 cut(s) 51, 94, 179
Eco32I GATATC 1 cut(s) 120
Eco47I GGWCC 1 cut(s) 349
Eco53kI GAGCTC 2 cut(s) 92, 177
EcoICRI GAGCTC 2 cut(s) 92, 177
EcoO109I RGGNCCY 1 cut(s) 48
EcoRII CCWGG 1 cut(s) 399
EcoRV GATATC 1 cut(s) 120
EcoT14I CCWWGG 1 cut(s) 52
EcoT38I GRGCYC 3 cut(s) 51, 94, 179
ErhI CCWWGG 1 cut(s) 52
FaeI CATG 2 cut(s) 200, 275
FaiI YATR 9 cut(s) 162, 198, 211, 222, 273, 280, 354, 356, 409
FatI CATG 2 cut(s) 196, 271
FauI CCCGC 1 cut(s) 127
FauNDI CATATG 1 cut(s) 354
FbaI TGATCA 1 cut(s) 202
FokI GGATG 1 cut(s) 134
FriOI GRGCYC 3 cut(s) 51, 94, 179
HaeIII GGCC 1 cut(s) 49
Hin1II CATG 2 cut(s) 200, 275
HindIII AAGCTT 2 cut(s) 41, 236
HphI GGTGA 4 cut(s) 35, 127, 212, 389
Hpy188I TCNGA 3 cut(s) 61, 207, 217
Hpy188III TCNNGA 1 cut(s) 151
HpyAV CCTTC 1 cut(s) 4
HpyCH4III ACNGT 2 cut(s) 36, 103
Hsp92II CATG 2 cut(s) 200, 275
Ksp22I TGATCA 1 cut(s) 202
Kzo9I GATC 3 cut(s) 56, 202, 231
LmnI GCTCC 5 cut(s) 89, 149, 174, 319, 329
LpnPI CCDG 8 cut(s) 6, 91, 144, 164, 206, 358, 382, 386
MaeIII GTNAC 1 cut(s) 343
MalI GATC 3 cut(s) 58, 204, 233
MboI GATC 3 cut(s) 56, 202, 231
MboII GAAGA 1 cut(s) 376
MhlI GDGCHC 3 cut(s) 51, 94, 179
MnlI CCTC 1 cut(s) 62
MseI TTAA 1 cut(s) 285
MspA1I CMGCKG 1 cut(s) 134
MspR9I CCNGG 1 cut(s) 401
MvaI CCWGG 1 cut(s) 401
NdeI CATATG 1 cut(s) 354
NdeII GATC 3 cut(s) 56, 202, 231
NlaIII CATG 2 cut(s) 200, 275
NlaIV GGNNCC 2 cut(s) 49, 50
Pfl23II CGTACG 1 cut(s) 249
Psp124BI GAGCTC 2 cut(s) 94, 179
Psp6I CCWGG 1 cut(s) 399
PspGI CCWGG 1 cut(s) 399
PspLI CGTACG 1 cut(s) 249
PspN4I GGNNCC 2 cut(s) 49, 50
PspOMI GGGCCC 1 cut(s) 47
PspPI GGNCC 3 cut(s) 47, 48, 349
RsaI GTAC 1 cut(s) 251
RsaNI GTAC 1 cut(s) 250
SacI GAGCTC 2 cut(s) 94, 179
SaqAI TTAA 1 cut(s) 285
Sau3AI GATC 3 cut(s) 56, 202, 231
Sau96I GGNCC 3 cut(s) 47, 48, 349
ScrFI CCNGG 1 cut(s) 401
SduI GDGCHC 3 cut(s) 51, 94, 179
SetI ASST 6 cut(s) 45, 94, 179, 240, 291, 402
SinI GGWCC 1 cut(s) 349
SsiI CCGC 2 cut(s) 66, 134
SspI AATATT 2 cut(s) 257, 309
SstI GAGCTC 2 cut(s) 94, 179
StyD4I CCNGG 1 cut(s) 399
StyI CCWWGG 1 cut(s) 52
TaaI ACNGT 2 cut(s) 36, 103
Tru1I TTAA 1 cut(s) 285
Tru9I TTAA 1 cut(s) 285
TspDTI ATGAA 2 cut(s) 260, 377
TspGWI ACGGA 2 cut(s) 237, 362
VpaK11BI GGWCC 1 cut(s) 349
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.