Rroxscaffold_5G00366710

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000621
Physical Location & Seq
Reverse (-)
48670799 .. 48672667
1869 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00366710.1

Sequence Viewer

Length: 972 bp
ATGAACCAGAGTTCTATGGAACCAGAGAAAAAACCGTTGAAGGTTGGACCGTTCGGTTCAGATAGTGGAGGAGATCGTTTTGATGACGGAGTTCACTCAACGGTGAGGCAAATGGTGATCTGTTCTAGTCTATCGTCAATTCTCTACATCCAGATTGAATATGATGACAACGGAAAATCATCTTGGTCACAGAAGCATGGTTGTAGCAATCCCATCGGTGTGGACAAAACAGAGACGATCAAGCTTGATTATCCAGATGAATATCTGACTTCAATTCACGGATATTACACAGATAGTTGGTACTTCCCTACCTACATTACGTCACTCACTTTCACTAGCAACAGAAAAGTGTACGGACCATATGGAAATTATGAAAACGAGGGAAAAAAATATTTCACAATCCAAGTCCCTGGAAGTAAGATCGTTGGGTTCCATGGCAGGTCTGATGAGTGGTTTGATCTTCGTGCATTAGGAGCTTACCTTAAGCCTTTGGTTCATACACAACAATACTCCAACAATATTATTTCTGCACCAGTGGCTCATATTGGTTATCCGGCTGCGTATAATTATACGCCGCCTCTTCCTCGTCCTCCTCCATATTATGGAAATTACTATAATAATCCTAACCAGCCACCACAGGCTGCTCCACCTGCTCCGACTCCATATCCATACGGTAACTATTACGTTCCTCCTCCCGGTCCTCCTCTGCCATATAATAATGGATACTATGACTATCAGATGTCACAGGCACCACCACCACCGCCGCCTGCTGCTCTTGGACGTCCTAGTAAGCCGAAAAGTGCTCCCAGTAAGCCCAAGGCTGCTAAAAATAATGGCCCTAAAAACGTATCTTACAGGGTTTTAGGGAATGAAGTCGGTGGAAACACAGGAGACCATAATGGAGTTTTCAACGTTGGCAACAAGAATACTGGTCGCCACATGGAAGATGATGATGATGAAGACGAAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jacalin

Protein Analysis

323

Amino Acids

35.86

Weight (kDa)

6.07

Isoelectric Point (pI)

40.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Jacalin PF01419 15 - 160 4.6e-35 Jacalin-like lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000621)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g32560 FvH4_3g35880 FvH4_4g19501 FvH4_4g19530 FvH4_4g19531 FvH4_4g19540 FvH4_4g19540
prunus_persica Prupe.1G121600_v2.0.a1 Prupe.1G121700_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0416301 RchiOBHm_Chr4g0424661
rosa_laevigata RLG00000007388 RLG00000007432 RLG00000007434 RLG00000007435 RLG00000007439 RLG00000007441 RLG00000007442 RLG00000007458 RLG00000007465 RLG00000007997 RLG00000008015 RLG00000008016 RLG00000008017 RLG00000035315
rosa_multiflora Rmu_co8150926.1_g000001 Rmu_co8225682.1_g000001 Rmu_co8296077.1_g000001 Rmu_sc0004841.1_g000022 Rmu_sc0006553.1_g000008 Rmu_sc0008889.1_g000002
rosa_roxburghii Rroxscaffold_1G00030220 Rroxscaffold_2G00114820 Rroxscaffold_3G00219510 Rroxscaffold_3G00255600 Rroxscaffold_4G00304060 Rroxscaffold_4G00330360 Rroxscaffold_4G00330400 Rroxscaffold_5G00359920 Rroxscaffold_5G00359930 Rroxscaffold_5G00359960 Rroxscaffold_5G00366600 Rroxscaffold_5G00366630 Rroxscaffold_5G00366640 Rroxscaffold_5G00366710 Rroxscaffold_5G00366970
rosa_rugosa Rorug04G0138400 Rorug04G0138500 Rorug04G0138700 Rorug04G0140600 Rorug04G0199000 Rorug07G0061600
rosa_samantha Rh4AG255800 Rh4AG255900 Rh4AG256000 Rh4AG256200 Rh4BG261200 Rh4BG261300 Rh4BG261600 Rh4CG212100 Rh4CG212800 Rh4CG212900 Rh4CG272300 Rh4CG272500 Rh4CG272600 Rh4CG272800 Rh4CG275800 Rh4DG255800 Rh4DG255900 Rh4DG256200 Rh4DG257200 Rh4DG257300 Rh7BG190600 Rh7CG198100
rosa_wichuraiana Rw1G001980 Rw4G022090 Rw4G024000 Rw4G024010 Rw7G016430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 658
AatII GACGTC 1 cut(s) 784
Acc36I ACCTGC 2 cut(s) 429, 658
AccB1I GGYRCC 1 cut(s) 748
AccB7I CCANNNNNTGG 1 cut(s) 602
AciI CCGC 3 cut(s) 575, 761, 764
AclI AACGTT 1 cut(s) 912
AcyI GRCGYC 1 cut(s) 781
AfaI GTAC 2 cut(s) 302, 353
AfiI CCNNNNNNNGG 2 cut(s) 602, 695
AflII CTTAAG 1 cut(s) 482
AgsI TTSAA 4 cut(s) 40, 158, 273, 910
AjnI CCWGG 1 cut(s) 409
AjuI GAANNNNNNNTTGG 2 cut(s) 166, 198
AluBI AGCT 2 cut(s) 244, 476
AluI AGCT 2 cut(s) 244, 476
Alw21I GWGCWC 1 cut(s) 805
Alw26I GTCTC 2 cut(s) 227, 885
AoxI GGCC 1 cut(s) 835
ApeKI GCWGC 4 cut(s) 557, 641, 770, 821
AspS9I GGNCC 4 cut(s) 47, 356, 698, 836
AsuC2I CCSGG 1 cut(s) 696
AsuHPI GGTGA 2 cut(s) 115, 127
AvaII GGWCC 3 cut(s) 47, 356, 698
BanI GGYRCC 1 cut(s) 748
BbsI GAAGAC 1 cut(s) 966
Bbv12I GWGCWC 1 cut(s) 805
BbvI GCAGC 4 cut(s) 544, 628, 757, 808
BccI CCATC 1 cut(s) 221
BcgI CGANNNNNNTGC 2 cut(s) 196, 230
BciT130I CCWGG 1 cut(s) 411
BciVI GTATCC 1 cut(s) 716
BcnI CCSGG 1 cut(s) 696
BcoDI GTCTC 2 cut(s) 227, 885
BfaI CTAG 3 cut(s) 126, 336, 786
BfrI CTTAAG 1 cut(s) 482
BfuAI ACCTGC 2 cut(s) 429, 658
BfuI GTATCC 1 cut(s) 716
BisI GCNGC 6 cut(s) 558, 575, 642, 764, 771, 822
BlsI GCNGC 6 cut(s) 559, 576, 643, 765, 772, 823
Bme1390I CCNGG 2 cut(s) 411, 696
Bme18I GGWCC 3 cut(s) 47, 356, 698
BmgT120I GGNCC 4 cut(s) 47, 356, 698, 836
BmiI GGNNCC 3 cut(s) 21, 431, 750
BmrFI CCNGG 2 cut(s) 411, 696
BmrI ACTGGG 1 cut(s) 801
BmuI ACTGGG 1 cut(s) 801
BpiI GAAGAC 1 cut(s) 966
BpuMI CCSGG 1 cut(s) 696
BsaBI GATNNNNATC 1 cut(s) 261
BsaHI GRCGYC 1 cut(s) 781
BsaI GGTCTC 1 cut(s) 885
BsaJI CCNNGG 3 cut(s) 409, 433, 816
Bsc4I CCNNNNNNNGG 2 cut(s) 602, 695
Bse1I ACTGG 3 cut(s) 533, 807, 934
Bse8I GATNNNNATC 1 cut(s) 261
BseBI CCWGG 1 cut(s) 411
BseDI CCNNGG 3 cut(s) 409, 433, 816
BseGI GGATG 1 cut(s) 147
BseJI GATNNNNATC 1 cut(s) 261
BseLI CCNNNNNNNGG 2 cut(s) 602, 695
BseNI ACTGG 3 cut(s) 533, 807, 934
BseRI GAGGAG 4 cut(s) 84, 582, 681, 693
BseXI GCAGC 4 cut(s) 544, 628, 757, 808
BsgI GTGCAG 1 cut(s) 513
BshFI GGCC 1 cut(s) 837
BshNI GGYRCC 1 cut(s) 748
BsiHKAI GWGCWC 1 cut(s) 805
BsiSI CCGG 2 cut(s) 554, 696
BslFI GGGAC 1 cut(s) 392
BslI CCNNNNNNNGG 2 cut(s) 602, 695
BsmAI GTCTC 2 cut(s) 227, 885
BsmBI CGTCTC 1 cut(s) 227
BsmFI GGGAC 1 cut(s) 392
BsnI GGCC 1 cut(s) 837
Bso31I GGTCTC 1 cut(s) 885
Bsp1286I GDGCHC 1 cut(s) 805
Bsp143I GATC 5 cut(s) 73, 117, 237, 420, 457
Bsp19I CCATGG 1 cut(s) 433
BspACI CCGC 3 cut(s) 575, 761, 764
BspANI GGCC 1 cut(s) 837
BspLI GGNNCC 3 cut(s) 21, 431, 750
BspMI ACCTGC 2 cut(s) 429, 658
BspT107I GGYRCC 1 cut(s) 748
BspTI CTTAAG 1 cut(s) 482
BspTNI GGTCTC 1 cut(s) 885
BsrI ACTGG 3 cut(s) 533, 807, 934
BssECI CCNNGG 3 cut(s) 409, 433, 816
BssMI GATC 5 cut(s) 73, 117, 237, 420, 457
BssNI GRCGYC 1 cut(s) 781
BssT1I CCWWGG 2 cut(s) 433, 816
Bst2UI CCWGG 1 cut(s) 411
Bst4CI ACNGT 4 cut(s) 36, 51, 103, 674
Bst6I CTCTTC 1 cut(s) 585
BstACI GRCGYC 1 cut(s) 781
BstAFI CTTAAG 1 cut(s) 482
BstC8I GCNNGC 1 cut(s) 768
BstDSI CCRYGG 1 cut(s) 433
BstF5I GGATG 1 cut(s) 147
BstKTI GATC 5 cut(s) 76, 120, 240, 423, 460
BstMAI GTCTC 2 cut(s) 227, 885
BstMBI GATC 5 cut(s) 73, 117, 237, 420, 457
BstMWI GCNNNNNNNGC 3 cut(s) 473, 536, 650
BstNI CCWGG 1 cut(s) 411
BstSCI CCNGG 2 cut(s) 409, 694
BstV1I GCAGC 4 cut(s) 544, 628, 757, 808
BstV2I GAAGAC 1 cut(s) 966
BstXI CCANNNNNNTGG 2 cut(s) 220, 410
BsuI GTATCC 1 cut(s) 716
BsuRI GGCC 1 cut(s) 837
BtgI CCRYGG 1 cut(s) 433
BtsCI GGATG 1 cut(s) 147
BtsIMutI CAGTG 1 cut(s) 540
BveI ACCTGC 2 cut(s) 429, 658
Cac8I GCNNGC 1 cut(s) 768
Cfr13I GGNCC 4 cut(s) 47, 356, 698, 836
Csp6I GTAC 2 cut(s) 301, 352
CviAII CATG 3 cut(s) 197, 434, 940
CviQI GTAC 2 cut(s) 301, 352
DpnI GATC 5 cut(s) 75, 119, 239, 422, 459
DpnII GATC 5 cut(s) 73, 117, 237, 420, 457
Eam1104I CTCTTC 1 cut(s) 585
EarI CTCTTC 1 cut(s) 585
Eco130I CCWWGG 2 cut(s) 433, 816
Eco31I GGTCTC 1 cut(s) 885
Eco47I GGWCC 3 cut(s) 47, 356, 698
EcoRII CCWGG 1 cut(s) 409
EcoT14I CCWWGG 2 cut(s) 433, 816
ErhI CCWWGG 2 cut(s) 433, 816
Esp3I CGTCTC 1 cut(s) 227
FaeI CATG 3 cut(s) 200, 437, 943
FaqI GGGAC 1 cut(s) 392
FatI CATG 3 cut(s) 196, 433, 939
FauNDI CATATG 1 cut(s) 361
Fnu4HI GCNGC 6 cut(s) 558, 575, 642, 764, 771, 822
FokI GGATG 1 cut(s) 134
Fsp4HI GCNGC 6 cut(s) 558, 575, 642, 764, 771, 822
FspBI CTAG 3 cut(s) 126, 336, 786
GluI GCNGC 6 cut(s) 558, 575, 642, 764, 771, 822
HaeIII GGCC 1 cut(s) 837
HapII CCGG 2 cut(s) 554, 696
Hin1I GRCGYC 1 cut(s) 781
Hin1II CATG 3 cut(s) 200, 437, 943
HindIII AAGCTT 1 cut(s) 242
HinfI GANTC 1 cut(s) 658
HpaII CCGG 2 cut(s) 554, 696
HphI GGTGA 2 cut(s) 115, 127
Hpy166II GTNNAC 3 cut(s) 94, 223, 352
Hpy188I TCNGA 5 cut(s) 61, 267, 445, 657, 738
Hpy188III TCNNGA 2 cut(s) 151, 254
Hpy8I GTNNAC 3 cut(s) 94, 223, 352
HpyAV CCTTC 1 cut(s) 34
HpyCH4III ACNGT 4 cut(s) 36, 51, 103, 674
HpyCH4IV ACGT 5 cut(s) 320, 684, 781, 846, 912
HpyCH4V TGCA 2 cut(s) 467, 530
HpyF10VI GCNNNNNNNGC 3 cut(s) 473, 536, 650
HpySE526I ACGT 5 cut(s) 320, 684, 781, 846, 912
Hsp92I GRCGYC 1 cut(s) 781
Hsp92II CATG 3 cut(s) 200, 437, 943
Kzo9I GATC 5 cut(s) 73, 117, 237, 420, 457
LmnI GCTCC 4 cut(s) 473, 649, 658, 808
Lsp1109I GCAGC 4 cut(s) 544, 628, 757, 808
MaeI CTAG 3 cut(s) 126, 336, 786
MaeII ACGT 5 cut(s) 320, 684, 781, 846, 912
MaeIII GTNAC 4 cut(s) 186, 321, 674, 741
MalI GATC 5 cut(s) 75, 119, 239, 422, 459
MboI GATC 5 cut(s) 73, 117, 237, 420, 457
MboII GAAGA 4 cut(s) 452, 572, 956, 971
MhlI GDGCHC 1 cut(s) 805
MluCI AATT 5 cut(s) 138, 273, 367, 565, 607
MlyI GAGTC 1 cut(s) 652
MmeI TCCRAC 3 cut(s) 25, 537, 680
MseI TTAA 1 cut(s) 483
MslI CAYNNNNRTG 1 cut(s) 218
MspCI CTTAAG 1 cut(s) 482
MspI CCGG 2 cut(s) 554, 696
MspR9I CCNGG 2 cut(s) 411, 696
MvaI CCWGG 1 cut(s) 411
MwoI GCNNNNNNNGC 3 cut(s) 473, 536, 650
NciI CCSGG 1 cut(s) 696
NcoI CCATGG 1 cut(s) 433
NdeI CATATG 1 cut(s) 361
NdeII GATC 5 cut(s) 73, 117, 237, 420, 457
NlaIII CATG 3 cut(s) 200, 437, 943
NlaIV GGNNCC 3 cut(s) 21, 431, 750
NmuCI GTSAC 3 cut(s) 186, 321, 741
PaqCI CACCTGC 1 cut(s) 658
PflMI CCANNNNNTGG 1 cut(s) 602
PkrI GCNGC 6 cut(s) 559, 576, 643, 765, 772, 823
PleI GAGTC 1 cut(s) 652
PpsI GAGTC 1 cut(s) 652
Psp1406I AACGTT 1 cut(s) 912
Psp6I CCWGG 1 cut(s) 409
PspGI CCWGG 1 cut(s) 409
PspN4I GGNNCC 3 cut(s) 21, 431, 750
PspPI GGNCC 4 cut(s) 47, 356, 698, 836
RsaI GTAC 2 cut(s) 302, 353
RsaNI GTAC 2 cut(s) 301, 352
RseI CAYNNNNRTG 1 cut(s) 218
SaqAI TTAA 1 cut(s) 483
SatI GCNGC 6 cut(s) 558, 575, 642, 764, 771, 822
Sau3AI GATC 5 cut(s) 73, 117, 237, 420, 457
Sau96I GGNCC 4 cut(s) 47, 356, 698, 836
SchI GAGTC 1 cut(s) 652
ScrFI CCNGG 2 cut(s) 411, 696
SduI GDGCHC 1 cut(s) 805
SinI GGWCC 3 cut(s) 47, 356, 698
SmiMI CAYNNNNRTG 1 cut(s) 218
SmlI CTYRAG 1 cut(s) 482
SmoI CTYRAG 1 cut(s) 482
Sse9I AATT 5 cut(s) 138, 273, 367, 565, 607
SsiI CCGC 3 cut(s) 575, 761, 764
SspI AATATT 2 cut(s) 392, 520
SspMI CTAG 3 cut(s) 126, 336, 786
StyD4I CCNGG 2 cut(s) 409, 694
StyI CCWWGG 2 cut(s) 433, 816
TaaI ACNGT 4 cut(s) 36, 51, 103, 674
TaiI ACGT 5 cut(s) 323, 687, 784, 849, 915
TasI AATT 5 cut(s) 138, 273, 367, 565, 607
TauI GCSGC 2 cut(s) 577, 766
Tru1I TTAA 1 cut(s) 483
Tru9I TTAA 1 cut(s) 483
TscAI CASTG 1 cut(s) 540
TseFI GTSAC 3 cut(s) 186, 321, 741
TseI GCWGC 4 cut(s) 557, 641, 770, 821
Tsp45I GTSAC 3 cut(s) 186, 321, 741
TspDTI ATGAA 6 cut(s) 17, 273, 387, 485, 885, 972
TspGWI ACGGA 4 cut(s) 102, 186, 294, 369
TspRI CASTG 1 cut(s) 540
Van91I CCANNNNNTGG 1 cut(s) 602
Vha464I CTTAAG 1 cut(s) 482
VpaK11BI GGWCC 3 cut(s) 47, 356, 698
XspI CTAG 3 cut(s) 126, 336, 786
ZraI GACGTC 1 cut(s) 782
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.