RLG00000007439

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000621
Physical Location & Seq
Forward (+)
16840402 .. 16840983
582 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007439

Sequence Viewer

Length: 582 bp
ATGAACCCAGGCGCCTCGTTCGCCAATGGTTCAGATCCAAATCAGCCTCCATACAATACCAGCTATGGTGCTGAAGCTCCAGCTCATAATGGATATACAGGTCATACTCCTGCTCCTACATCTTATGGATACTATAACCCTGCTAACCATCCTTCACAGGGCGGTCCTCCTCCTCCATCTTATGGATACTTTAACCCTGCTAACCATCCTTCACAGGGCGGCCCTCCTCCTCCATCTTATGGATACTATAACCCTGCTAACCATGCATCAGAGGGCGGTTCTGCTCCACCCGCTCATGCCCCATACGGCAATTACCCTCCGTCGACTTATGGCAATGAATTCTACGCCGACGACCCTCGATTGCATAAGGCACCTGTTCAACGTCCTACTAAGCCGAAGACTCCTACGAAGCCCAAGACTGCTGCAAGAACTGGCCCTAAAAATGTATCGTACAGGGTTGCAAACAATCGTGTCAGTGGAAACACGGGGGACCATAATGGAGTCTTCAACGTTGGCAATAAGAATTCTGGTCGTCACCGAGTGGACGATGACGACGAGGAAGATGAGGAAGATTATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jacalin

Protein Analysis

194

Amino Acids

20.61

Weight (kDa)

6.11

Isoelectric Point (pI)

40.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000621)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g32560 FvH4_3g35880 FvH4_4g19501 FvH4_4g19530 FvH4_4g19531 FvH4_4g19540 FvH4_4g19540
prunus_persica Prupe.1G121600_v2.0.a1 Prupe.1G121700_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0416301 RchiOBHm_Chr4g0424661
rosa_laevigata RLG00000007388 RLG00000007432 RLG00000007434 RLG00000007435 RLG00000007439 RLG00000007441 RLG00000007442 RLG00000007458 RLG00000007465 RLG00000007997 RLG00000008015 RLG00000008016 RLG00000008017 RLG00000035315
rosa_multiflora Rmu_co8150926.1_g000001 Rmu_co8225682.1_g000001 Rmu_co8296077.1_g000001 Rmu_sc0004841.1_g000022 Rmu_sc0006553.1_g000008 Rmu_sc0008889.1_g000002
rosa_roxburghii Rroxscaffold_1G00030220 Rroxscaffold_2G00114820 Rroxscaffold_3G00219510 Rroxscaffold_3G00255600 Rroxscaffold_4G00304060 Rroxscaffold_4G00330360 Rroxscaffold_4G00330400 Rroxscaffold_5G00359920 Rroxscaffold_5G00359930 Rroxscaffold_5G00359960 Rroxscaffold_5G00366600 Rroxscaffold_5G00366630 Rroxscaffold_5G00366640 Rroxscaffold_5G00366710 Rroxscaffold_5G00366970
rosa_rugosa Rorug04G0138400 Rorug04G0138500 Rorug04G0138700 Rorug04G0140600 Rorug04G0199000 Rorug07G0061600
rosa_samantha Rh4AG255800 Rh4AG255900 Rh4AG256000 Rh4AG256200 Rh4BG261200 Rh4BG261300 Rh4BG261600 Rh4CG212100 Rh4CG212800 Rh4CG212900 Rh4CG272300 Rh4CG272500 Rh4CG272600 Rh4CG272800 Rh4CG275800 Rh4DG255800 Rh4DG255900 Rh4DG256200 Rh4DG257200 Rh4DG257300 Rh7BG190600 Rh7CG198100
rosa_wichuraiana Rw1G001980 Rw4G022090 Rw4G024000 Rw4G024010 Rw7G016430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 11, 370
AccB7I CCANNNNNTGG 2 cut(s) 182, 239
AccBSI CCGCTC 1 cut(s) 293
AccI GTMKAC 1 cut(s) 323
AciI CCGC 4 cut(s) 162, 219, 276, 291
AclI AACGTT 1 cut(s) 510
AclWI GGATC 1 cut(s) 29
AcsI RAATTY 2 cut(s) 338, 523
AcuI CTGAAG 1 cut(s) 93
AcyI GRCGYC 1 cut(s) 12
AdeI CACNNNGTG 1 cut(s) 541
AfaI GTAC 1 cut(s) 452
AfiI CCNNNNNNNGG 4 cut(s) 158, 182, 215, 239
AgsI TTSAA 2 cut(s) 380, 508
AjnI CCWGG 1 cut(s) 7
AluBI AGCT 3 cut(s) 63, 77, 83
AluI AGCT 3 cut(s) 63, 77, 83
AlwI GGATC 1 cut(s) 29
AoxI GGCC 2 cut(s) 220, 433
ApeKI GCWGC 1 cut(s) 422
ApoI RAATTY 2 cut(s) 338, 523
AspLEI GCGC 1 cut(s) 14
AspS9I GGNCC 4 cut(s) 164, 221, 434, 490
AsuHPI GGTGA 1 cut(s) 527
AvaII GGWCC 2 cut(s) 164, 490
BanI GGYRCC 2 cut(s) 11, 370
BbsI GAAGAC 2 cut(s) 404, 496
BbvI GCAGC 1 cut(s) 409
BccI CCATC 4 cut(s) 156, 184, 213, 241
BceAI ACGGC 1 cut(s) 322
BciT130I CCWGG 1 cut(s) 9
BciVI GTATCC 3 cut(s) 122, 179, 236
BfoI RGCGCY 1 cut(s) 15
BfuI GTATCC 3 cut(s) 122, 179, 236
BisI GCNGC 2 cut(s) 220, 423
BlsI GCNGC 2 cut(s) 221, 424
Bme1390I CCNGG 1 cut(s) 9
Bme18I GGWCC 2 cut(s) 164, 490
BmgT120I GGNCC 4 cut(s) 164, 221, 434, 490
BmiI GGNNCC 3 cut(s) 13, 372, 491
BmrFI CCNGG 1 cut(s) 9
BmsI GCATC 1 cut(s) 275
BpiI GAAGAC 2 cut(s) 404, 496
BpmI CTGGAG 1 cut(s) 63
BsaBI GATNNNNATC 1 cut(s) 39
BsaHI GRCGYC 1 cut(s) 12
BsaJI CCNNGG 1 cut(s) 7
BsaXI ACNNNNNCTCC 2 cut(s) 97, 127
Bsc4I CCNNNNNNNGG 4 cut(s) 158, 182, 215, 239
Bse1I ACTGG 1 cut(s) 436
Bse3DI GCAATG 1 cut(s) 340
Bse8I GATNNNNATC 1 cut(s) 39
BseBI CCWGG 1 cut(s) 9
BseDI CCNNGG 1 cut(s) 7
BseGI GGATG 2 cut(s) 148, 205
BseJI GATNNNNATC 1 cut(s) 39
BseLI CCNNNNNNNGG 4 cut(s) 158, 182, 215, 239
BseMI GCAATG 1 cut(s) 340
BseNI ACTGG 1 cut(s) 436
BseRI GAGGAG 4 cut(s) 159, 162, 216, 219
BseXI GCAGC 1 cut(s) 409
BshFI GGCC 2 cut(s) 222, 435
BshNI GGYRCC 2 cut(s) 11, 370
BslFI GGGAC 1 cut(s) 503
BslI CCNNNNNNNGG 4 cut(s) 158, 182, 215, 239
BsmFI GGGAC 1 cut(s) 503
BsnI GGCC 2 cut(s) 222, 435
Bsp143I GATC 1 cut(s) 34
BspACI CCGC 4 cut(s) 162, 219, 276, 291
BspANI GGCC 2 cut(s) 222, 435
BspLI GGNNCC 3 cut(s) 13, 372, 491
BspPI GGATC 1 cut(s) 29
BspT107I GGYRCC 2 cut(s) 11, 370
BsrBI CCGCTC 1 cut(s) 293
BsrDI GCAATG 1 cut(s) 340
BsrI ACTGG 1 cut(s) 436
BssECI CCNNGG 1 cut(s) 7
BssMI GATC 1 cut(s) 34
BssNI GRCGYC 1 cut(s) 12
Bst2UI CCWGG 1 cut(s) 9
BstACI GRCGYC 1 cut(s) 12
BstDEI CTNAG 1 cut(s) 390
BstF5I GGATG 2 cut(s) 148, 205
BstH2I RGCGCY 1 cut(s) 15
BstHHI GCGC 1 cut(s) 14
BstKTI GATC 1 cut(s) 37
BstMBI GATC 1 cut(s) 34
BstMWI GCNNNNNNNGC 3 cut(s) 20, 263, 290
BstNI CCWGG 1 cut(s) 9
BstSCI CCNGG 1 cut(s) 7
BstV1I GCAGC 1 cut(s) 409
BstV2I GAAGAC 2 cut(s) 404, 496
BstX2I RGATCY 1 cut(s) 34
BstYI RGATCY 1 cut(s) 34
BsuI GTATCC 3 cut(s) 122, 179, 236
BsuRI GGCC 2 cut(s) 222, 435
BtsCI GGATG 2 cut(s) 148, 205
BtsIMutI CAGTG 1 cut(s) 481
CfoI GCGC 1 cut(s) 14
Cfr13I GGNCC 4 cut(s) 164, 221, 434, 490
Csp6I GTAC 1 cut(s) 451
CviAII CATG 2 cut(s) 263, 296
CviJI RGCY 8 cut(s) 46, 63, 77, 83, 222, 394, 412, 435
CviKI_1 RGCY 8 cut(s) 46, 63, 77, 83, 222, 394, 412, 435
CviQI GTAC 1 cut(s) 451
DdeI CTNAG 1 cut(s) 390
DinI GGCGCC 1 cut(s) 13
DpnI GATC 1 cut(s) 36
DpnII GATC 1 cut(s) 34
DraIII CACNNNGTG 1 cut(s) 541
Eco47I GGWCC 2 cut(s) 164, 490
Eco57I CTGAAG 1 cut(s) 93
EcoRI GAATTC 2 cut(s) 338, 523
EcoRII CCWGG 1 cut(s) 7
EcoT22I ATGCAT 1 cut(s) 268
EgeI GGCGCC 1 cut(s) 13
EheI GGCGCC 1 cut(s) 13
FaeI CATG 2 cut(s) 266, 299
FaqI GGGAC 1 cut(s) 503
FatI CATG 2 cut(s) 262, 295
FauI CCCGC 1 cut(s) 298
FblI GTMKAC 1 cut(s) 323
Fnu4HI GCNGC 2 cut(s) 220, 423
FokI GGATG 2 cut(s) 135, 192
Fsp4HI GCNGC 2 cut(s) 220, 423
GlaI GCGC 1 cut(s) 13
GluI GCNGC 2 cut(s) 220, 423
GsuI CTGGAG 1 cut(s) 63
HaeII RGCGCY 1 cut(s) 15
HaeIII GGCC 2 cut(s) 222, 435
HhaI GCGC 1 cut(s) 14
Hin1I GRCGYC 1 cut(s) 12
Hin1II CATG 2 cut(s) 266, 299
Hin6I GCGC 1 cut(s) 12
HinP1I GCGC 1 cut(s) 12
HincII GTYRAC 1 cut(s) 324
HindII GTYRAC 1 cut(s) 324
HinfI GANTC 2 cut(s) 400, 501
HphI GGTGA 1 cut(s) 527
Hpy166II GTNNAC 2 cut(s) 324, 544
Hpy188I TCNGA 2 cut(s) 34, 271
Hpy8I GTNNAC 2 cut(s) 324, 544
Hpy99I CGWCG 3 cut(s) 325, 353, 557
HpyAV CCTTC 2 cut(s) 162, 219
HpyCH4IV ACGT 2 cut(s) 382, 510
HpyCH4V TGCA 4 cut(s) 266, 364, 425, 461
HpyF10VI GCNNNNNNNGC 3 cut(s) 20, 263, 290
HpyF3I CTNAG 1 cut(s) 390
HpySE526I ACGT 2 cut(s) 382, 510
Hsp92I GRCGYC 1 cut(s) 12
Hsp92II CATG 2 cut(s) 266, 299
HspAI GCGC 1 cut(s) 12
KasI GGCGCC 1 cut(s) 11
Kzo9I GATC 1 cut(s) 34
LmnI GCTCC 3 cut(s) 82, 118, 289
Lsp1109I GCAGC 1 cut(s) 409
LweI GCATC 1 cut(s) 275
MaeII ACGT 2 cut(s) 382, 510
MaeIII GTNAC 1 cut(s) 533
MalI GATC 1 cut(s) 36
MbiI CCGCTC 1 cut(s) 293
MboI GATC 1 cut(s) 34
MboII GAAGA 4 cut(s) 409, 496, 572, 581
MflI RGATCY 1 cut(s) 34
MluCI AATT 3 cut(s) 310, 338, 523
Mly113I GGCGCC 1 cut(s) 12
MlyI GAGTC 2 cut(s) 394, 510
Mph1103I ATGCAT 1 cut(s) 268
MseI TTAA 1 cut(s) 192
MspR9I CCNGG 1 cut(s) 9
MvaI CCWGG 1 cut(s) 9
MwoI GCNNNNNNNGC 3 cut(s) 20, 263, 290
NarI GGCGCC 1 cut(s) 12
NdeII GATC 1 cut(s) 34
NlaIII CATG 2 cut(s) 266, 299
NlaIV GGNNCC 3 cut(s) 13, 372, 491
NmuCI GTSAC 1 cut(s) 533
NsiI ATGCAT 1 cut(s) 268
PcsI WCGNNNNNNNCGW 1 cut(s) 552
PflMI CCANNNNNTGG 2 cut(s) 182, 239
PkrI GCNGC 2 cut(s) 221, 424
PleI GAGTC 2 cut(s) 394, 509
PluTI GGCGCC 1 cut(s) 15
PpsI GAGTC 2 cut(s) 394, 509
Psp1406I AACGTT 1 cut(s) 510
Psp6I CCWGG 1 cut(s) 7
PspGI CCWGG 1 cut(s) 7
PspN4I GGNNCC 3 cut(s) 13, 372, 491
PspPI GGNCC 4 cut(s) 164, 221, 434, 490
PsuI RGATCY 1 cut(s) 34
RsaI GTAC 1 cut(s) 452
RsaNI GTAC 1 cut(s) 451
SalI GTCGAC 1 cut(s) 322
SaqAI TTAA 1 cut(s) 192
SatI GCNGC 2 cut(s) 220, 423
Sau3AI GATC 1 cut(s) 34
Sau96I GGNCC 4 cut(s) 164, 221, 434, 490
SchI GAGTC 2 cut(s) 394, 510
ScrFI CCNGG 1 cut(s) 9
SetI ASST 7 cut(s) 65, 79, 85, 103, 376, 385, 513
SfaNI GCATC 1 cut(s) 275
SfoI GGCGCC 1 cut(s) 13
SinI GGWCC 2 cut(s) 164, 490
Sse9I AATT 3 cut(s) 310, 338, 523
SsiI CCGC 4 cut(s) 162, 219, 276, 291
SspDI GGCGCC 1 cut(s) 11
StyD4I CCNGG 1 cut(s) 7
TaiI ACGT 2 cut(s) 385, 513
TaqI TCGA 2 cut(s) 323, 358
TasI AATT 3 cut(s) 310, 338, 523
TauI GCSGC 1 cut(s) 222
Tru1I TTAA 1 cut(s) 192
Tru9I TTAA 1 cut(s) 192
TscAI CASTG 1 cut(s) 481
TseFI GTSAC 1 cut(s) 533
TseI GCWGC 1 cut(s) 422
Tsp45I GTSAC 1 cut(s) 533
TspDTI ATGAA 2 cut(s) 17, 351
TspGWI ACGGA 1 cut(s) 309
TspRI CASTG 1 cut(s) 481
Van91I CCANNNNNTGG 2 cut(s) 182, 239
VpaK11BI GGWCC 2 cut(s) 164, 490
XapI RAATTY 2 cut(s) 338, 523
XmiI GTMKAC 1 cut(s) 323
Zsp2I ATGCAT 1 cut(s) 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.