RLG00000007465

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000621
Physical Location & Seq
Reverse (-)
17149892 .. 17151042
1151 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007465

Sequence Viewer

Length: 483 bp
ATGTCATATTATACCCATCTGATGAACCCAGGCGCCATGTTCGCCAATGGTTCAGAGCCAAATCAGCCGCCATACAATACCGGCCAGCTATGGCGGAATTCCATCCCATATTTTTTTCAACCTCCTCCTTCTCCATCTTATGGATACTATAACCTGGCTAACCATGCATCAGAGGGCGGTTCTGCTCCACCAGCTCATGCCCCATACGACTATTACCCTCCCCTGTCGACTTATGACAATGGATTCTATGTCGACCCTCAATTGCACAAGGCGCCTGTTCGACGTCTTGCTAAGCCGAAGACTCCTACGAAGCCCAAGACTGCTGCAAGAAGTGGCCCTAAGAATGTATCGTACAGGGTTGCAAACAATCGTGTCAGTGGAAACACGGGGGACCATAATGGAGTCTTCAACGTTGGCAATAAGAATTCTGGTCATCACCGAGTGGACGATGACGATGAGGAAGATGAGGAAGATTATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jacalin

Protein Analysis

161

Amino Acids

17.84

Weight (kDa)

6.14

Isoelectric Point (pI)

51.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000621)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g32560 FvH4_3g35880 FvH4_4g19501 FvH4_4g19530 FvH4_4g19531 FvH4_4g19540 FvH4_4g19540
prunus_persica Prupe.1G121600_v2.0.a1 Prupe.1G121700_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0416301 RchiOBHm_Chr4g0424661
rosa_laevigata RLG00000007388 RLG00000007432 RLG00000007434 RLG00000007435 RLG00000007439 RLG00000007441 RLG00000007442 RLG00000007458 RLG00000007465 RLG00000007997 RLG00000008015 RLG00000008016 RLG00000008017 RLG00000035315
rosa_multiflora Rmu_co8150926.1_g000001 Rmu_co8225682.1_g000001 Rmu_co8296077.1_g000001 Rmu_sc0004841.1_g000022 Rmu_sc0006553.1_g000008 Rmu_sc0008889.1_g000002
rosa_roxburghii Rroxscaffold_1G00030220 Rroxscaffold_2G00114820 Rroxscaffold_3G00219510 Rroxscaffold_3G00255600 Rroxscaffold_4G00304060 Rroxscaffold_4G00330360 Rroxscaffold_4G00330400 Rroxscaffold_5G00359920 Rroxscaffold_5G00359930 Rroxscaffold_5G00359960 Rroxscaffold_5G00366600 Rroxscaffold_5G00366630 Rroxscaffold_5G00366640 Rroxscaffold_5G00366710 Rroxscaffold_5G00366970
rosa_rugosa Rorug04G0138400 Rorug04G0138500 Rorug04G0138700 Rorug04G0140600 Rorug04G0199000 Rorug07G0061600
rosa_samantha Rh4AG255800 Rh4AG255900 Rh4AG256000 Rh4AG256200 Rh4BG261200 Rh4BG261300 Rh4BG261600 Rh4CG212100 Rh4CG212800 Rh4CG212900 Rh4CG272300 Rh4CG272500 Rh4CG272600 Rh4CG272800 Rh4CG275800 Rh4DG255800 Rh4DG255900 Rh4DG256200 Rh4DG257200 Rh4DG257300 Rh7BG190600 Rh7CG198100
rosa_wichuraiana Rw1G001980 Rw4G022090 Rw4G024000 Rw4G024010 Rw7G016430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 286
AccB1I GGYRCC 2 cut(s) 32, 271
AccB7I CCANNNNNTGG 1 cut(s) 140
AccI GTMKAC 2 cut(s) 227, 252
AciI CCGC 3 cut(s) 68, 94, 177
AclI AACGTT 1 cut(s) 411
AcoI YGGCCR 1 cut(s) 82
AcsI RAATTY 2 cut(s) 97, 424
AcyI GRCGYC 3 cut(s) 33, 272, 283
AdeI CACNNNGTG 1 cut(s) 442
AfaI GTAC 1 cut(s) 353
AfiI CCNNNNNNNGG 1 cut(s) 140
AgsI TTSAA 2 cut(s) 119, 409
AjnI CCWGG 2 cut(s) 28, 153
AluBI AGCT 2 cut(s) 88, 194
AluI AGCT 2 cut(s) 88, 194
AoxI GGCC 2 cut(s) 82, 334
ApeKI GCWGC 1 cut(s) 323
ApoI RAATTY 2 cut(s) 97, 424
AspLEI GCGC 2 cut(s) 35, 274
AspS9I GGNCC 2 cut(s) 335, 391
AsuHPI GGTGA 1 cut(s) 428
AvaII GGWCC 1 cut(s) 391
BanI GGYRCC 2 cut(s) 32, 271
BbsI GAAGAC 2 cut(s) 305, 397
BbvI GCAGC 1 cut(s) 310
BccI CCATC 3 cut(s) 24, 110, 142
BciT130I CCWGG 2 cut(s) 30, 155
BciVI GTATCC 1 cut(s) 137
BfoI RGCGCY 2 cut(s) 36, 275
BfuI GTATCC 1 cut(s) 137
BisI GCNGC 2 cut(s) 68, 324
BlpI GCTNAGC 1 cut(s) 291
BlsI GCNGC 2 cut(s) 69, 325
Bme1390I CCNGG 2 cut(s) 30, 155
Bme18I GGWCC 1 cut(s) 391
BmgT120I GGNCC 2 cut(s) 335, 391
BmiI GGNNCC 3 cut(s) 34, 273, 392
BmrFI CCNGG 2 cut(s) 30, 155
BmsI GCATC 1 cut(s) 176
BpiI GAAGAC 2 cut(s) 305, 397
Bpu1102I GCTNAGC 1 cut(s) 291
BsaHI GRCGYC 3 cut(s) 33, 272, 283
BsaJI CCNNGG 1 cut(s) 28
Bsc4I CCNNNNNNNGG 1 cut(s) 140
Bse118I RCCGGY 1 cut(s) 80
BseBI CCWGG 2 cut(s) 30, 155
BseDI CCNNGG 1 cut(s) 28
BseGI GGATG 1 cut(s) 102
BseLI CCNNNNNNNGG 1 cut(s) 140
BseRI GAGGAG 1 cut(s) 114
BseXI GCAGC 1 cut(s) 310
BshFI GGCC 2 cut(s) 84, 336
BshNI GGYRCC 2 cut(s) 32, 271
BsiSI CCGG 1 cut(s) 81
BslFI GGGAC 1 cut(s) 404
BslI CCNNNNNNNGG 1 cut(s) 140
BsmFI GGGAC 1 cut(s) 404
BsnI GGCC 2 cut(s) 84, 336
Bsp1720I GCTNAGC 1 cut(s) 291
BspACI CCGC 3 cut(s) 68, 94, 177
BspANI GGCC 2 cut(s) 84, 336
BspLI GGNNCC 3 cut(s) 34, 273, 392
BspT107I GGYRCC 2 cut(s) 32, 271
BsrFI RCCGGY 1 cut(s) 80
BssAI RCCGGY 1 cut(s) 80
BssECI CCNNGG 1 cut(s) 28
BssNI GRCGYC 3 cut(s) 33, 272, 283
Bst2UI CCWGG 2 cut(s) 30, 155
BstACI GRCGYC 3 cut(s) 33, 272, 283
BstC8I GCNNGC 1 cut(s) 86
BstDEI CTNAG 2 cut(s) 291, 339
BstF5I GGATG 1 cut(s) 102
BstH2I RGCGCY 2 cut(s) 36, 275
BstHHI GCGC 2 cut(s) 35, 274
BstMWI GCNNNNNNNGC 5 cut(s) 41, 64, 164, 191, 271
BstNI CCWGG 2 cut(s) 30, 155
BstSCI CCNGG 2 cut(s) 28, 153
BstV1I GCAGC 1 cut(s) 310
BstV2I GAAGAC 2 cut(s) 305, 397
BsuI GTATCC 1 cut(s) 137
BsuRI GGCC 2 cut(s) 84, 336
BtsCI GGATG 1 cut(s) 102
BtsIMutI CAGTG 1 cut(s) 382
Cac8I GCNNGC 1 cut(s) 86
CfoI GCGC 2 cut(s) 35, 274
Cfr10I RCCGGY 1 cut(s) 80
Cfr13I GGNCC 2 cut(s) 335, 391
Csp6I GTAC 1 cut(s) 352
CviAII CATG 3 cut(s) 37, 164, 197
CviJI RGCY 9 cut(s) 58, 67, 84, 88, 158, 194, 295, 313, 336
CviKI_1 RGCY 9 cut(s) 58, 67, 84, 88, 158, 194, 295, 313, 336
CviQI GTAC 1 cut(s) 352
DdeI CTNAG 2 cut(s) 291, 339
DinI GGCGCC 2 cut(s) 34, 273
DraIII CACNNNGTG 1 cut(s) 442
EaeI YGGCCR 1 cut(s) 82
EciI GGCGGA 1 cut(s) 109
Eco47I GGWCC 1 cut(s) 391
EcoRI GAATTC 2 cut(s) 97, 424
EcoRII CCWGG 2 cut(s) 28, 153
EcoT22I ATGCAT 1 cut(s) 169
EgeI GGCGCC 2 cut(s) 34, 273
EheI GGCGCC 2 cut(s) 34, 273
FaeI CATG 3 cut(s) 40, 167, 200
FaqI GGGAC 1 cut(s) 404
FatI CATG 3 cut(s) 36, 163, 196
FblI GTMKAC 2 cut(s) 227, 252
Fnu4HI GCNGC 2 cut(s) 68, 324
FokI GGATG 1 cut(s) 89
Fsp4HI GCNGC 2 cut(s) 68, 324
GlaI GCGC 2 cut(s) 34, 273
GluI GCNGC 2 cut(s) 68, 324
HaeII RGCGCY 2 cut(s) 36, 275
HaeIII GGCC 2 cut(s) 84, 336
HapII CCGG 1 cut(s) 81
HhaI GCGC 2 cut(s) 35, 274
Hin1I GRCGYC 3 cut(s) 33, 272, 283
Hin1II CATG 3 cut(s) 40, 167, 200
Hin6I GCGC 2 cut(s) 33, 272
HinP1I GCGC 2 cut(s) 33, 272
HincII GTYRAC 2 cut(s) 228, 253
HindII GTYRAC 2 cut(s) 228, 253
HinfI GANTC 3 cut(s) 243, 301, 402
HpaII CCGG 1 cut(s) 81
HphI GGTGA 1 cut(s) 428
Hpy166II GTNNAC 3 cut(s) 228, 253, 445
Hpy188I TCNGA 3 cut(s) 21, 55, 172
Hpy8I GTNNAC 3 cut(s) 228, 253, 445
Hpy99I CGWCG 1 cut(s) 285
HpyAV CCTTC 1 cut(s) 138
HpyCH4IV ACGT 2 cut(s) 283, 411
HpyCH4V TGCA 4 cut(s) 167, 265, 326, 362
HpyF10VI GCNNNNNNNGC 5 cut(s) 41, 64, 164, 191, 271
HpyF3I CTNAG 2 cut(s) 291, 339
HpySE526I ACGT 2 cut(s) 283, 411
Hsp92I GRCGYC 3 cut(s) 33, 272, 283
Hsp92II CATG 3 cut(s) 40, 167, 200
HspAI GCGC 2 cut(s) 33, 272
KasI GGCGCC 2 cut(s) 32, 271
LmnI GCTCC 1 cut(s) 190
Lsp1109I GCAGC 1 cut(s) 310
LweI GCATC 1 cut(s) 176
MaeII ACGT 2 cut(s) 283, 411
MboII GAAGA 4 cut(s) 310, 397, 473, 482
MfeI CAATTG 1 cut(s) 260
MluCI AATT 3 cut(s) 97, 260, 424
Mly113I GGCGCC 2 cut(s) 33, 272
MlyI GAGTC 2 cut(s) 295, 411
MnlI CCTC 7 cut(s) 132, 135, 166, 228, 267, 451, 460
Mph1103I ATGCAT 1 cut(s) 169
MspI CCGG 1 cut(s) 81
MspR9I CCNGG 2 cut(s) 30, 155
MunI CAATTG 1 cut(s) 260
MvaI CCWGG 2 cut(s) 30, 155
MwoI GCNNNNNNNGC 5 cut(s) 41, 64, 164, 191, 271
NarI GGCGCC 2 cut(s) 33, 272
NlaIII CATG 3 cut(s) 40, 167, 200
NlaIV GGNNCC 3 cut(s) 34, 273, 392
NsiI ATGCAT 1 cut(s) 169
PfeI GAWTC 1 cut(s) 243
PflMI CCANNNNNTGG 1 cut(s) 140
PkrI GCNGC 2 cut(s) 69, 325
PleI GAGTC 2 cut(s) 295, 410
PluTI GGCGCC 2 cut(s) 36, 275
PpsI GAGTC 2 cut(s) 295, 410
Psp1406I AACGTT 1 cut(s) 411
Psp6I CCWGG 2 cut(s) 28, 153
PspGI CCWGG 2 cut(s) 28, 153
PspN4I GGNNCC 3 cut(s) 34, 273, 392
PspPI GGNCC 2 cut(s) 335, 391
RsaI GTAC 1 cut(s) 353
RsaNI GTAC 1 cut(s) 352
SalI GTCGAC 2 cut(s) 226, 251
SatI GCNGC 2 cut(s) 68, 324
Sau96I GGNCC 2 cut(s) 335, 391
SchI GAGTC 2 cut(s) 295, 411
ScrFI CCNGG 2 cut(s) 30, 155
SetI ASST 6 cut(s) 90, 124, 156, 196, 286, 414
SfaNI GCATC 1 cut(s) 176
SfoI GGCGCC 2 cut(s) 34, 273
SinI GGWCC 1 cut(s) 391
Sse9I AATT 3 cut(s) 97, 260, 424
SsiI CCGC 3 cut(s) 68, 94, 177
SspDI GGCGCC 2 cut(s) 32, 271
StyD4I CCNGG 2 cut(s) 28, 153
TaiI ACGT 2 cut(s) 286, 414
TaqI TCGA 3 cut(s) 227, 252, 280
TasI AATT 3 cut(s) 97, 260, 424
TauI GCSGC 1 cut(s) 70
TfiI GAWTC 1 cut(s) 243
TscAI CASTG 1 cut(s) 382
TseI GCWGC 1 cut(s) 323
TspDTI ATGAA 1 cut(s) 38
TspRI CASTG 1 cut(s) 382
Van91I CCANNNNNTGG 1 cut(s) 140
VpaK11BI GGWCC 1 cut(s) 391
XapI RAATTY 2 cut(s) 97, 424
XmiI GTMKAC 2 cut(s) 227, 252
ZraI GACGTC 1 cut(s) 284
Zsp2I ATGCAT 1 cut(s) 169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.