Rorug07G0061600

Jacalin-like lectin domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000621
Physical Location & Seq
Reverse (-)
4482058 .. 4484433
2376 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0061600.1

Sequence Viewer

Length: 750 bp
ATGGCCTCTCTCTCCGTAGCTGCCCCCAATTTCACCACCTCTTTCATCGGCAAAAAAATTGCTTTTCGTGAAAATACCAAGCGGCAAAACTGTTGCTTCTTTCTGCGAAGCCCTAGATGTGCAGCTCTATCCTATGGAGGTAATGCTCCGAAGTTTCCCCGGGTCAGTGTTTGGGATCCCTATAAGCGTCTTGGTGTGAACCAAGATGCTTCTGAGGAGGAGATATGGGGATCGCGCAACTTTCTCTTGCAACAGTATGCTGGACATGAGAGAAGTGAAGAGTCAATTGAAGCTGCTTTTGAGAAAATATTGATGACAAGCTTCCAGCAGAGGAAGAAAACAAAAATCAACTTGAAGAGCAGGTTAAAGAAGAAAGTAGAAGAGTCTCCACCTTGGGTTAAGAATTTGCTCAATTTCGTGGAACTTCCAGCGACTGAAGTTATTTTTAGAAGATTGTTCCTCTTTGCATTCATGGGTGGCTGGAGTATTATGAACTCAGCGGAAGGTGGACCTGCTTTTCAGGTGGCAGTGTCCTTGGCAGCTTGCATATATTTCCTCAACGAGAAGACAAAGAGCTTGGCTAGAGCTTCCATTTATGGACTTGGAGCACTTGTTACTGGTTGGGTGTGCGGTTCGATTTTGGTCCCAAATATTCCGTCAATGCTATTGAACCCGACGTGGACTCTCGAACTTCTAACATCACTAGTAGTTTATGTGTTCCTGTTCCTTGCTTGCACTTTTCTCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jacalin

Protein Analysis

249

Amino Acids

28.0

Weight (kDa)

9.57

Isoelectric Point (pI)

48.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CPP1-like PF11833 68 - 248 1.1e-60 Protein CHAPERONE-LIKE PROTEIN OF POR1-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000621)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g32560 FvH4_3g35880 FvH4_4g19501 FvH4_4g19530 FvH4_4g19531 FvH4_4g19540 FvH4_4g19540
prunus_persica Prupe.1G121600_v2.0.a1 Prupe.1G121700_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0416301 RchiOBHm_Chr4g0424661
rosa_laevigata RLG00000007388 RLG00000007432 RLG00000007434 RLG00000007435 RLG00000007439 RLG00000007441 RLG00000007442 RLG00000007458 RLG00000007465 RLG00000007997 RLG00000008015 RLG00000008016 RLG00000008017 RLG00000035315
rosa_multiflora Rmu_co8150926.1_g000001 Rmu_co8225682.1_g000001 Rmu_co8296077.1_g000001 Rmu_sc0004841.1_g000022 Rmu_sc0006553.1_g000008 Rmu_sc0008889.1_g000002
rosa_roxburghii Rroxscaffold_1G00030220 Rroxscaffold_2G00114820 Rroxscaffold_3G00219510 Rroxscaffold_3G00255600 Rroxscaffold_4G00304060 Rroxscaffold_4G00330360 Rroxscaffold_4G00330400 Rroxscaffold_5G00359920 Rroxscaffold_5G00359930 Rroxscaffold_5G00359960 Rroxscaffold_5G00366600 Rroxscaffold_5G00366630 Rroxscaffold_5G00366640 Rroxscaffold_5G00366710 Rroxscaffold_5G00366970
rosa_rugosa Rorug04G0138400 Rorug04G0138500 Rorug04G0138700 Rorug04G0140600 Rorug04G0199000 Rorug07G0061600
rosa_samantha Rh4AG255800 Rh4AG255900 Rh4AG256000 Rh4AG256200 Rh4BG261200 Rh4BG261300 Rh4BG261600 Rh4CG212100 Rh4CG212800 Rh4CG212900 Rh4CG272300 Rh4CG272500 Rh4CG272600 Rh4CG272800 Rh4CG275800 Rh4DG255800 Rh4DG255900 Rh4DG256200 Rh4DG257200 Rh4DG257300 Rh7BG190600 Rh7CG198100
rosa_wichuraiana Rw1G001980 Rw4G022090 Rw4G024000 Rw4G024010 Rw7G016430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 351, 520
AccII CGCG 1 cut(s) 235
AciI CCGC 3 cut(s) 82, 500, 630
AclWI GGATC 3 cut(s) 170, 183, 238
AcsI RAATTY 1 cut(s) 403
AcuI CTGAAG 1 cut(s) 456
AgsI TTSAA 3 cut(s) 290, 355, 670
AhlI ACTAGT 1 cut(s) 703
AjiI CACGTC 1 cut(s) 678
AluBI AGCT 7 cut(s) 20, 125, 293, 321, 542, 576, 587
AluI AGCT 7 cut(s) 20, 125, 293, 321, 542, 576, 587
Alw21I GWGCWC 1 cut(s) 610
Alw26I GTCTC 1 cut(s) 390
AlwI GGATC 3 cut(s) 170, 183, 238
AlwNI CAGNNNCTG 1 cut(s) 434
Ama87I CYCGRG 1 cut(s) 159
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 4 cut(s) 20, 122, 293, 539
ApoI RAATTY 1 cut(s) 403
ArsI GACNNNNNNTTYG 2 cut(s) 641, 673
AspLEI GCGC 1 cut(s) 237
AspS9I GGNCC 2 cut(s) 509, 643
AsuC2I CCSGG 2 cut(s) 160, 161
AsuHPI GGTGA 1 cut(s) 25
AvaI CYCGRG 1 cut(s) 159
AvaII GGWCC 2 cut(s) 509, 643
BamHI GGATCC 1 cut(s) 175
BbsI GAAGAC 1 cut(s) 572
Bbv12I GWGCWC 1 cut(s) 610
BbvI GCAGC 4 cut(s) 7, 134, 280, 551
BcnI CCSGG 2 cut(s) 160, 161
BcoDI GTCTC 1 cut(s) 390
BcuI ACTAGT 1 cut(s) 703
BfaI CTAG 3 cut(s) 114, 582, 704
BfuAI ACCTGC 2 cut(s) 351, 520
BisI GCNGC 5 cut(s) 21, 83, 123, 294, 540
BlsI GCNGC 5 cut(s) 22, 84, 124, 295, 541
Bme1390I CCNGG 2 cut(s) 160, 161
Bme18I GGWCC 2 cut(s) 509, 643
BmeT110I CYCGRG 1 cut(s) 159
BmgBI CACGTC 1 cut(s) 678
BmgT120I GGNCC 2 cut(s) 509, 643
BmiI GGNNCC 2 cut(s) 177, 645
BmrFI CCNGG 2 cut(s) 160, 161
BmsI GCATC 1 cut(s) 196
BpiI GAAGAC 1 cut(s) 572
BpmI CTGGAG 1 cut(s) 502
BpuEI CTTGAG 1 cut(s) 728
BpuMI CCSGG 2 cut(s) 160, 161
BsaJI CCNNGG 4 cut(s) 158, 159, 392, 534
BsaXI ACNNNNNCTCC 2 cut(s) 597, 627
Bse1I ACTGG 1 cut(s) 622
BseDI CCNNGG 4 cut(s) 158, 159, 392, 534
BseMII CTCAG 2 cut(s) 204, 510
BseNI ACTGG 1 cut(s) 622
BseRI GAGGAG 2 cut(s) 230, 233
BseXI GCAGC 4 cut(s) 7, 134, 280, 551
BsgI GTGCAG 1 cut(s) 141
Bsh1236I CGCG 1 cut(s) 235
BshFI GGCC 1 cut(s) 5
BsiHKAI GWGCWC 1 cut(s) 610
BsiHKCI CYCGRG 1 cut(s) 159
BsiSI CCGG 1 cut(s) 160
BslFI GGGAC 1 cut(s) 629
BsmAI GTCTC 1 cut(s) 390
BsmFI GGGAC 1 cut(s) 629
BsmI GAATGC 1 cut(s) 467
BsnI GGCC 1 cut(s) 5
BsoBI CYCGRG 1 cut(s) 159
Bsp1286I GDGCHC 1 cut(s) 610
Bsp143I GATC 2 cut(s) 175, 230
BspACI CCGC 3 cut(s) 82, 500, 630
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 2 cut(s) 205, 509
BspFNI CGCG 1 cut(s) 235
BspLI GGNNCC 2 cut(s) 177, 645
BspMI ACCTGC 2 cut(s) 351, 520
BspPI GGATC 3 cut(s) 170, 183, 238
BspQI GCTCTTC 1 cut(s) 350
BsrI ACTGG 1 cut(s) 622
BssECI CCNNGG 4 cut(s) 158, 159, 392, 534
BssMI GATC 2 cut(s) 175, 230
BssT1I CCWWGG 2 cut(s) 392, 534
Bst4CI ACNGT 2 cut(s) 92, 255
Bst6I CTCTTC 3 cut(s) 273, 350, 375
BstC8I GCNNGC 2 cut(s) 544, 733
BstDEI CTNAG 2 cut(s) 213, 496
BstFNI CGCG 1 cut(s) 235
BstHHI GCGC 1 cut(s) 237
BstKTI GATC 2 cut(s) 178, 233
BstMAI GTCTC 1 cut(s) 390
BstMBI GATC 2 cut(s) 175, 230
BstSCI CCNGG 2 cut(s) 158, 159
BstUI CGCG 1 cut(s) 235
BstV1I GCAGC 4 cut(s) 7, 134, 280, 551
BstV2I GAAGAC 1 cut(s) 572
BstX2I RGATCY 1 cut(s) 175
BstYI RGATCY 1 cut(s) 175
BsuRI GGCC 1 cut(s) 5
BtrI CACGTC 1 cut(s) 678
BtsI GCAGTG 1 cut(s) 534
BtsIMutI CAGTG 2 cut(s) 172, 534
BveI ACCTGC 2 cut(s) 351, 520
Cac8I GCNNGC 2 cut(s) 544, 733
CaiI CAGNNNCTG 1 cut(s) 434
CfoI GCGC 1 cut(s) 237
Cfr13I GGNCC 2 cut(s) 509, 643
Cfr9I CCCGGG 1 cut(s) 159
CseI GACGC 1 cut(s) 176
CviAII CATG 2 cut(s) 266, 472
DdeI CTNAG 2 cut(s) 213, 496
DpnI GATC 2 cut(s) 177, 232
DpnII GATC 2 cut(s) 175, 230
Eam1104I CTCTTC 3 cut(s) 273, 350, 375
EarI CTCTTC 3 cut(s) 273, 350, 375
Eco130I CCWWGG 2 cut(s) 392, 534
Eco47I GGWCC 2 cut(s) 509, 643
Eco57I CTGAAG 1 cut(s) 456
Eco88I CYCGRG 1 cut(s) 159
EcoT14I CCWWGG 2 cut(s) 392, 534
ErhI CCWWGG 2 cut(s) 392, 534
FaeI CATG 2 cut(s) 269, 475
FaqI GGGAC 1 cut(s) 629
FatI CATG 2 cut(s) 265, 471
Fnu4HI GCNGC 5 cut(s) 21, 83, 123, 294, 540
Fsp4HI GCNGC 5 cut(s) 21, 83, 123, 294, 540
FspBI CTAG 3 cut(s) 114, 582, 704
GlaI GCGC 1 cut(s) 236
GluI GCNGC 5 cut(s) 21, 83, 123, 294, 540
GsuI CTGGAG 1 cut(s) 502
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 160
HgaI GACGC 1 cut(s) 176
HhaI GCGC 1 cut(s) 237
Hin1II CATG 2 cut(s) 269, 475
Hin6I GCGC 1 cut(s) 235
HinP1I GCGC 1 cut(s) 235
HindIII AAGCTT 1 cut(s) 319
HinfI GANTC 3 cut(s) 281, 383, 682
HpaII CCGG 1 cut(s) 160
HphI GGTGA 1 cut(s) 25
Hpy166II GTNNAC 3 cut(s) 199, 509, 681
Hpy188I TCNGA 2 cut(s) 150, 214
Hpy188III TCNNGA 2 cut(s) 68, 686
Hpy8I GTNNAC 3 cut(s) 199, 509, 681
Hpy99I CGWCG 1 cut(s) 679
HpyAV CCTTC 1 cut(s) 497
HpyCH4III ACNGT 2 cut(s) 92, 255
HpyCH4IV ACGT 1 cut(s) 677
HpyCH4V TGCA 5 cut(s) 122, 250, 467, 546, 735
HpyF3I CTNAG 2 cut(s) 213, 496
HpySE526I ACGT 1 cut(s) 677
Hsp92II CATG 2 cut(s) 269, 475
HspAI GCGC 1 cut(s) 235
Kzo9I GATC 2 cut(s) 175, 230
LguI GCTCTTC 1 cut(s) 350
LmnI GCTCC 2 cut(s) 151, 605
Lsp1109I GCAGC 4 cut(s) 7, 134, 280, 551
LweI GCATC 1 cut(s) 196
MaeI CTAG 3 cut(s) 114, 582, 704
MaeII ACGT 1 cut(s) 677
MaeIII GTNAC 1 cut(s) 613
MalI GATC 2 cut(s) 177, 232
MboI GATC 2 cut(s) 175, 230
MboII GAAGA 7 cut(s) 290, 346, 367, 382, 392, 462, 577
MfeI CAATTG 1 cut(s) 285
MflI RGATCY 1 cut(s) 175
MhlI GDGCHC 1 cut(s) 610
MluCI AATT 5 cut(s) 28, 57, 285, 403, 412
MlyI GAGTC 3 cut(s) 290, 392, 676
MnlI CCTC 8 cut(s) 16, 49, 131, 208, 211, 324, 470, 566
MseI TTAA 2 cut(s) 365, 399
MspA1I CMGCKG 1 cut(s) 500
MspI CCGG 1 cut(s) 160
MspR9I CCNGG 2 cut(s) 160, 161
MunI CAATTG 1 cut(s) 285
Mva1269I GAATGC 1 cut(s) 467
MvnI CGCG 1 cut(s) 235
NciI CCSGG 2 cut(s) 160, 161
NdeII GATC 2 cut(s) 175, 230
NlaIII CATG 2 cut(s) 269, 475
NlaIV GGNNCC 2 cut(s) 177, 645
PciSI GCTCTTC 1 cut(s) 350
PctI GAATGC 1 cut(s) 467
PkrI GCNGC 5 cut(s) 22, 84, 124, 295, 541
PleI GAGTC 3 cut(s) 289, 391, 676
PpsI GAGTC 3 cut(s) 289, 391, 676
PspN4I GGNNCC 2 cut(s) 177, 645
PspPI GGNCC 2 cut(s) 509, 643
PstNI CAGNNNCTG 1 cut(s) 434
PsuI RGATCY 1 cut(s) 175
SapI GCTCTTC 1 cut(s) 350
SaqAI TTAA 2 cut(s) 365, 399
SatI GCNGC 5 cut(s) 21, 83, 123, 294, 540
Sau3AI GATC 2 cut(s) 175, 230
Sau96I GGNCC 2 cut(s) 509, 643
SchI GAGTC 3 cut(s) 290, 392, 676
ScrFI CCNGG 2 cut(s) 160, 161
SduI GDGCHC 1 cut(s) 610
SfaNI GCATC 1 cut(s) 196
SinI GGWCC 2 cut(s) 509, 643
SmaI CCCGGG 1 cut(s) 161
SmlI CTYRAG 1 cut(s) 743
SmoI CTYRAG 1 cut(s) 743
SpeI ACTAGT 1 cut(s) 703
Sse9I AATT 5 cut(s) 28, 57, 285, 403, 412
SsiI CCGC 3 cut(s) 82, 500, 630
SspI AATATT 2 cut(s) 309, 652
SspMI CTAG 3 cut(s) 114, 582, 704
StyD4I CCNGG 2 cut(s) 158, 159
StyI CCWWGG 2 cut(s) 392, 534
TaaI ACNGT 2 cut(s) 92, 255
TaiI ACGT 1 cut(s) 680
TaqI TCGA 2 cut(s) 635, 687
TasI AATT 5 cut(s) 28, 57, 285, 403, 412
TauI GCSGC 1 cut(s) 85
Tru1I TTAA 2 cut(s) 365, 399
Tru9I TTAA 2 cut(s) 365, 399
TscAI CASTG 2 cut(s) 172, 534
TseI GCWGC 4 cut(s) 20, 122, 293, 539
TspDTI ATGAA 3 cut(s) 34, 460, 506
TspGWI ACGGA 2 cut(s) 4, 645
TspMI CCCGGG 1 cut(s) 159
TspRI CASTG 2 cut(s) 172, 534
VpaK11BI GGWCC 2 cut(s) 509, 643
XapI RAATTY 1 cut(s) 403
XmaI CCCGGG 1 cut(s) 159
XspI CTAG 3 cut(s) 114, 582, 704
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.