FvH4_4g19530

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000621
Physical Location & Seq
Reverse (-)
23170146 .. 23170601
456 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g19530.t1

Sequence Viewer

Length: 456 bp
ATGTCACATTATCCCCAGATGATGAACCCTGGCGCCATGTTCGCCAATGGTTCGGATCCGAATAAGCCTTCAAACAATCCCAACTTTGGGGCTCCTGCATCATTTGCTCATAATGGATATCCAAGTTATAATAATTATGCCCTTCCTCCTCAATTTCATGGTTACTATAACAACCAATACCCATCACAGTCAGATCCTGCTCATCCAGCTGGTCATGCTGATCTCTATGGTGGATATTGCAACCATGTCGCTCCTCCTCCTCCTCCATCTTACTATGATCCAGTGTCACAGGCACCTGTTGCCCCTCAGTATCCTAGTAAGCCAAAGAGAGGCAAAGGTAGCAAAAGAACATCTTACAATGTTTCTGGGAATCGAATCAGCGGAAACAAAGGAGACCACAATGGAGTTTTCAATGTTGGCAACAAGAATACTCGTTACAACGATGAAGAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jacalin

Protein Analysis

152

Amino Acids

16.46

Weight (kDa)

8.58

Isoelectric Point (pI)

55.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000621)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g32560 FvH4_3g35880 FvH4_4g19501 FvH4_4g19530 FvH4_4g19531 FvH4_4g19540 FvH4_4g19540
prunus_persica Prupe.1G121600_v2.0.a1 Prupe.1G121700_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0416301 RchiOBHm_Chr4g0424661
rosa_laevigata RLG00000007388 RLG00000007432 RLG00000007434 RLG00000007435 RLG00000007439 RLG00000007441 RLG00000007442 RLG00000007458 RLG00000007465 RLG00000007997 RLG00000008015 RLG00000008016 RLG00000008017 RLG00000035315
rosa_multiflora Rmu_co8150926.1_g000001 Rmu_co8225682.1_g000001 Rmu_co8296077.1_g000001 Rmu_sc0004841.1_g000022 Rmu_sc0006553.1_g000008 Rmu_sc0008889.1_g000002
rosa_roxburghii Rroxscaffold_1G00030220 Rroxscaffold_2G00114820 Rroxscaffold_3G00219510 Rroxscaffold_3G00255600 Rroxscaffold_4G00304060 Rroxscaffold_4G00330360 Rroxscaffold_4G00330400 Rroxscaffold_5G00359920 Rroxscaffold_5G00359930 Rroxscaffold_5G00359960 Rroxscaffold_5G00366600 Rroxscaffold_5G00366630 Rroxscaffold_5G00366640 Rroxscaffold_5G00366710 Rroxscaffold_5G00366970
rosa_rugosa Rorug04G0138400 Rorug04G0138500 Rorug04G0138700 Rorug04G0140600 Rorug04G0199000 Rorug07G0061600
rosa_samantha Rh4AG255800 Rh4AG255900 Rh4AG256000 Rh4AG256200 Rh4BG261200 Rh4BG261300 Rh4BG261600 Rh4CG212100 Rh4CG212800 Rh4CG212900 Rh4CG272300 Rh4CG272500 Rh4CG272600 Rh4CG272800 Rh4CG275800 Rh4DG255800 Rh4DG255900 Rh4DG256200 Rh4DG257200 Rh4DG257300 Rh7BG190600 Rh7CG198100
rosa_wichuraiana Rw1G001980 Rw4G022090 Rw4G024000 Rw4G024010 Rw7G016430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 129
AccB1I GGYRCC 2 cut(s) 32, 292
AciI CCGC 1 cut(s) 381
AclWI GGATC 4 cut(s) 50, 63, 188, 272
AcyI GRCGYC 1 cut(s) 33
AfiI CCNNNNNNNGG 3 cut(s) 86, 87, 329
AgsI TTSAA 2 cut(s) 72, 412
AjnI CCWGG 1 cut(s) 28
AluBI AGCT 1 cut(s) 209
AluI AGCT 1 cut(s) 209
Alw26I GTCTC 1 cut(s) 387
AlwI GGATC 4 cut(s) 50, 63, 188, 272
AlwNI CAGNNNCTG 1 cut(s) 197
AspLEI GCGC 1 cut(s) 35
BamHI GGATCC 1 cut(s) 55
BanI GGYRCC 2 cut(s) 32, 292
BanII GRGCYC 1 cut(s) 94
BccI CCATC 2 cut(s) 190, 274
BcgI CGANNNNNNTGC 2 cut(s) 229, 263
BciT130I CCWGG 1 cut(s) 30
BciVI GTATCC 1 cut(s) 321
BcoDI GTCTC 1 cut(s) 387
BfaI CTAG 1 cut(s) 315
BfoI RGCGCY 1 cut(s) 36
BfuI GTATCC 1 cut(s) 321
Bme1390I CCNGG 1 cut(s) 30
BmiI GGNNCC 4 cut(s) 34, 57, 93, 294
BmrFI CCNGG 1 cut(s) 30
BmsI GCATC 1 cut(s) 107
BsaHI GRCGYC 1 cut(s) 33
BsaI GGTCTC 1 cut(s) 387
BsaJI CCNNGG 1 cut(s) 28
Bsc4I CCNNNNNNNGG 3 cut(s) 86, 87, 329
Bse1I ACTGG 1 cut(s) 281
BseBI CCWGG 1 cut(s) 30
BseDI CCNNGG 1 cut(s) 28
BseGI GGATG 1 cut(s) 202
BseLI CCNNNNNNNGG 3 cut(s) 86, 87, 329
BseMII CTCAG 1 cut(s) 320
BseNI ACTGG 1 cut(s) 281
BseRI GAGGAG 5 cut(s) 138, 243, 246, 249, 252
BshNI GGYRCC 2 cut(s) 32, 292
BslI CCNNNNNNNGG 3 cut(s) 86, 87, 329
BsmAI GTCTC 1 cut(s) 387
Bso31I GGTCTC 1 cut(s) 387
Bsp1286I GDGCHC 1 cut(s) 94
Bsp143I GATC 4 cut(s) 55, 193, 220, 277
BspACI CCGC 1 cut(s) 381
BspCNI CTCAG 1 cut(s) 319
BspLI GGNNCC 4 cut(s) 34, 57, 93, 294
BspPI GGATC 4 cut(s) 50, 63, 188, 272
BspT107I GGYRCC 2 cut(s) 32, 292
BspTNI GGTCTC 1 cut(s) 387
BsrI ACTGG 1 cut(s) 281
BssECI CCNNGG 1 cut(s) 28
BssMI GATC 4 cut(s) 55, 193, 220, 277
BssNI GRCGYC 1 cut(s) 33
Bst2UI CCWGG 1 cut(s) 30
Bst4CI ACNGT 1 cut(s) 189
BstACI GRCGYC 1 cut(s) 33
BstAPI GCANNNNNTGC 2 cut(s) 104, 299
BstDEI CTNAG 1 cut(s) 306
BstF5I GGATG 1 cut(s) 202
BstH2I RGCGCY 1 cut(s) 36
BstHHI GCGC 1 cut(s) 35
BstKTI GATC 4 cut(s) 58, 196, 223, 280
BstMAI GTCTC 1 cut(s) 387
BstMBI GATC 4 cut(s) 55, 193, 220, 277
BstMWI GCNNNNNNNGC 6 cut(s) 41, 104, 206, 215, 299, 339
BstNI CCWGG 1 cut(s) 30
BstSCI CCNGG 1 cut(s) 28
BstX2I RGATCY 2 cut(s) 55, 193
BstYI RGATCY 2 cut(s) 55, 193
BsuI GTATCC 1 cut(s) 321
BtsCI GGATG 1 cut(s) 202
BtsIMutI CAGTG 1 cut(s) 288
CaiI CAGNNNCTG 1 cut(s) 197
CfoI GCGC 1 cut(s) 35
CviAII CATG 4 cut(s) 37, 158, 215, 245
CviJI RGCY 4 cut(s) 67, 92, 209, 322
CviKI_1 RGCY 4 cut(s) 67, 92, 209, 322
DdeI CTNAG 1 cut(s) 306
DinI GGCGCC 1 cut(s) 34
DpnI GATC 4 cut(s) 57, 195, 222, 279
DpnII GATC 4 cut(s) 55, 193, 220, 277
Eco24I GRGCYC 1 cut(s) 94
Eco31I GGTCTC 1 cut(s) 387
Eco32I GATATC 1 cut(s) 119
EcoRII CCWGG 1 cut(s) 28
EcoRV GATATC 1 cut(s) 119
EcoT38I GRGCYC 1 cut(s) 94
EgeI GGCGCC 1 cut(s) 34
EheI GGCGCC 1 cut(s) 34
FaeI CATG 4 cut(s) 40, 161, 218, 248
FalI AAGNNNNNCTT 2 cut(s) 337, 369
FatI CATG 4 cut(s) 36, 157, 214, 244
FokI GGATG 1 cut(s) 189
FriOI GRGCYC 1 cut(s) 94
FspBI CTAG 1 cut(s) 315
GlaI GCGC 1 cut(s) 34
HaeII RGCGCY 1 cut(s) 36
HhaI GCGC 1 cut(s) 35
Hin1I GRCGYC 1 cut(s) 33
Hin1II CATG 4 cut(s) 40, 161, 218, 248
Hin6I GCGC 1 cut(s) 33
HinP1I GCGC 1 cut(s) 33
HinfI GANTC 2 cut(s) 370, 375
Hpy188I TCNGA 3 cut(s) 55, 60, 193
HpyAV CCTTC 2 cut(s) 78, 152
HpyCH4III ACNGT 1 cut(s) 189
HpyCH4V TGCA 2 cut(s) 98, 240
HpyF10VI GCNNNNNNNGC 6 cut(s) 41, 104, 206, 215, 299, 339
HpyF3I CTNAG 1 cut(s) 306
Hsp92I GRCGYC 1 cut(s) 33
Hsp92II CATG 4 cut(s) 40, 161, 218, 248
HspAI GCGC 1 cut(s) 33
KasI GGCGCC 1 cut(s) 32
Kzo9I GATC 4 cut(s) 55, 193, 220, 277
LmnI GCTCC 2 cut(s) 97, 256
LweI GCATC 1 cut(s) 107
MaeI CTAG 1 cut(s) 315
MaeIII GTNAC 4 cut(s) 3, 161, 285, 434
MalI GATC 4 cut(s) 57, 195, 222, 279
MboI GATC 4 cut(s) 55, 193, 220, 277
MflI RGATCY 2 cut(s) 55, 193
MhlI GDGCHC 1 cut(s) 94
MluCI AATT 2 cut(s) 133, 152
Mly113I GGCGCC 1 cut(s) 33
MnlI CCTC 8 cut(s) 156, 159, 264, 267, 270, 273, 315, 323
MspA1I CMGCKG 2 cut(s) 209, 381
MspR9I CCNGG 1 cut(s) 30
MvaI CCWGG 1 cut(s) 30
MwoI GCNNNNNNNGC 6 cut(s) 41, 104, 206, 215, 299, 339
NarI GGCGCC 1 cut(s) 33
NdeII GATC 4 cut(s) 55, 193, 220, 277
NlaIII CATG 4 cut(s) 40, 161, 218, 248
NlaIV GGNNCC 4 cut(s) 34, 57, 93, 294
NmuCI GTSAC 2 cut(s) 3, 285
PfeI GAWTC 2 cut(s) 370, 375
PluTI GGCGCC 1 cut(s) 36
PsiI TTATAA 1 cut(s) 129
Psp6I CCWGG 1 cut(s) 28
PspGI CCWGG 1 cut(s) 28
PspN4I GGNNCC 4 cut(s) 34, 57, 93, 294
PstNI CAGNNNCTG 1 cut(s) 197
PsuI RGATCY 2 cut(s) 55, 193
PvuII CAGCTG 1 cut(s) 209
Sau3AI GATC 4 cut(s) 55, 193, 220, 277
ScrFI CCNGG 1 cut(s) 30
SduI GDGCHC 1 cut(s) 94
SetI ASST 3 cut(s) 211, 298, 340
SfaNI GCATC 1 cut(s) 107
SfoI GGCGCC 1 cut(s) 34
Sse9I AATT 2 cut(s) 133, 152
SsiI CCGC 1 cut(s) 381
SspDI GGCGCC 1 cut(s) 32
SspMI CTAG 1 cut(s) 315
StyD4I CCNGG 1 cut(s) 28
TaaI ACNGT 1 cut(s) 189
TaqI TCGA 1 cut(s) 373
TasI AATT 2 cut(s) 133, 152
TfiI GAWTC 2 cut(s) 370, 375
TscAI CASTG 1 cut(s) 288
TseFI GTSAC 2 cut(s) 3, 285
Tsp45I GTSAC 2 cut(s) 3, 285
TspDTI ATGAA 2 cut(s) 38, 146
TspRI CASTG 1 cut(s) 288
XspI CTAG 1 cut(s) 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.