Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000621

Physical Location & Seq

Genomic Coordinates Reverse (-)

40924971 .. 40944199

Gene Structure 19229 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00114820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGCGGTGGTCTCTAGTGGGGATTCTCACCCACAGCGGCACGAAGAAGGCGGGAAAGATAGAGGCGGTCGGACCCGATTGGAATTTCCTCCTCCGGTTTATCCGATCAAAAACGGACTCCCTCATTATTGTCTACAAAAGGAGACTCTCGACATCAAAGAAGGGAGAGCAGAAAGAAAAGAAATACACAGAGAGTAAAAAAGCAGAGAATACGCAGCAGAAAATTATAGTCGTAAAAGCAGAGAGGTGCAACTTCTGGGCAGCAAGAAGGCCAAGTTTCATTGGAGAAAGAAGAAATAAAGAGCTGCAGTGGAAGCAAGCCATCTGCAAAACTCTACTCCAACTTTTGAGCCTAAATTTAGTTCGACTTGTCAACAATAAAGCATTTGATGGCGTTCGGCATCGGTGGGAGGAGTGTTCTGCTAGTGAGAAGTTAGATGTGTCGGCGTCGGTGGAGATGAGGTGGACTCTACTAGAAGACGGCCTGCTTCCCGGCTTGCTTCCATACCTCAAGGATCATGGACCGAACAAGAGCCCCGTTGACATCGGTTCGAGTTTGGCCACCAATTGCGAGTGCTTGTTGGGCATAGTCAGATTCATCAAGTGTGAATGCCACATCCTAATAACGGATCCGCTTGAGTTGAAAATAGATCGTTGCGTAACTAAATGGCTAATGTATTTGCATGATTCGATTCATCACAATCCGGTGATTCATAGGGACTTGAAGTCCTCTAACATCCTACCGGATACAAAGTTTATTCCAAAGATTTCAGATTTTGGGATATCAAAATTTGGTGTAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 ko05169 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164 map05169

Pfam Domains

Protein Families

Pkinase_Tyr

Protein Analysis

267

Amino Acids

30.65

Weight (kDa)

9.51

Isoelectric Point (pI)

51.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	230 - 264	1.7e-08	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000621)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g32560 FvH4_3g35880 FvH4_4g19501 FvH4_4g19530 FvH4_4g19531 FvH4_4g19540 FvH4_4g19540
prunus_persica	Prupe.1G121600_v2.0.a1 Prupe.1G121700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0416301 RchiOBHm_Chr4g0424661
rosa_laevigata	RLG00000007388 RLG00000007432 RLG00000007434 RLG00000007435 RLG00000007439 RLG00000007441 RLG00000007442 RLG00000007458 RLG00000007465 RLG00000007997 RLG00000008015 RLG00000008016 RLG00000008017 RLG00000035315
rosa_multiflora	Rmu_co8150926.1_g000001 Rmu_co8225682.1_g000001 Rmu_co8296077.1_g000001 Rmu_sc0004841.1_g000022 Rmu_sc0006553.1_g000008 Rmu_sc0008889.1_g000002
rosa_roxburghii	Rroxscaffold_1G00030220 Rroxscaffold_2G00114820 Rroxscaffold_3G00219510 Rroxscaffold_3G00255600 Rroxscaffold_4G00304060 Rroxscaffold_4G00330360 Rroxscaffold_4G00330400 Rroxscaffold_5G00359920 Rroxscaffold_5G00359930 Rroxscaffold_5G00359960 Rroxscaffold_5G00366600 Rroxscaffold_5G00366630 Rroxscaffold_5G00366640 Rroxscaffold_5G00366710 Rroxscaffold_5G00366970
rosa_rugosa	Rorug04G0138400 Rorug04G0138500 Rorug04G0138700 Rorug04G0140600 Rorug04G0199000 Rorug07G0061600
rosa_samantha	Rh4AG255800 Rh4AG255900 Rh4AG256000 Rh4AG256200 Rh4BG261200 Rh4BG261300 Rh4BG261600 Rh4CG212100 Rh4CG212800 Rh4CG212900 Rh4CG272300 Rh4CG272500 Rh4CG272600 Rh4CG272800 Rh4CG275800 Rh4DG255800 Rh4DG255900 Rh4DG256200 Rh4DG257200 Rh4DG257300 Rh7BG190600 Rh7CG198100
rosa_wichuraiana	Rw1G001980 Rw4G022090 Rw4G024000 Rw4G024010 Rw7G016430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	132
AciI	CCGC	5 cut(s)	4, 36, 50, 65, 632
AclWI	GGATC	3 cut(s)	522, 623, 636
AcoI	YGGCCR	1 cut(s)	558
AcsI	RAATTY	3 cut(s)	82, 355, 788
AcyI	GRCGYC	1 cut(s)	446
AfiI	CCNNNNNNNGG	1 cut(s)	625
AgsI	TTSAA	2 cut(s)	643, 724
AhdI	GACNNNNNGTC	1 cut(s)	724
AluBI	AGCT	1 cut(s)	304
AluI	AGCT	1 cut(s)	304
Alw26I	GTCTC	2 cut(s)	15, 136
AlwI	GGATC	3 cut(s)	522, 623, 636
AoxI	GGCC	3 cut(s)	269, 481, 558
ApeKI	GCWGC	3 cut(s)	214, 260, 304
ApoI	RAATTY	3 cut(s)	82, 355, 788
AspS9I	GGNCC	2 cut(s)	71, 521
AsuC2I	CCSGG	1 cut(s)	492
AsuHPI	GGTGA	2 cut(s)	19, 718
AvaII	GGWCC	2 cut(s)	71, 521
BalI	TGGCCA	1 cut(s)	560
BamHI	GGATCC	1 cut(s)	628
BanII	GRGCYC	1 cut(s)	536
BbsI	GAAGAC	1 cut(s)	483
BbvI	GCAGC	3 cut(s)	226, 272, 291
BccI	CCATC	2 cut(s)	329, 383
BceAI	ACGGC	1 cut(s)	496
BciVI	GTATCC	1 cut(s)	739
BcnI	CCSGG	1 cut(s)	492
BcoDI	GTCTC	2 cut(s)	15, 136
BfaI	CTAG	3 cut(s)	14, 423, 473
BfmI	CTRYAG	1 cut(s)	305
BfuI	GTATCC	1 cut(s)	739
BisI	GCNGC	4 cut(s)	37, 215, 261, 305
BlsI	GCNGC	4 cut(s)	38, 216, 262, 306
Bme1390I	CCNGG	1 cut(s)	492
Bme18I	GGWCC	2 cut(s)	71, 521
BmeRI	GACNNNNNGTC	1 cut(s)	724
BmgT120I	GGNCC	2 cut(s)	71, 521
BmiI	GGNNCC	2 cut(s)	73, 630
BmrFI	CCNGG	1 cut(s)	492
BmsI	GCATC	1 cut(s)	409
BpiI	GAAGAC	1 cut(s)	483
BplI	GAGNNNNNCTC	2 cut(s)	451, 483
BpuEI	CTTGAG	2 cut(s)	494, 656
BpuMI	CCSGG	1 cut(s)	492
BsaHI	GRCGYC	1 cut(s)	446
BsaI	GGTCTC	1 cut(s)	15
BsaWI	WCCGGW	3 cut(s)	93, 703, 742
BsaXI	ACNNNNNCTCC	2 cut(s)	446, 476
Bsc4I	CCNNNNNNNGG	1 cut(s)	625
BseGI	GGATG	2 cut(s)	615, 735
BseLI	CCNNNNNNNGG	1 cut(s)	625
BseRI	GAGGAG	2 cut(s)	80, 425
BseXI	GCAGC	3 cut(s)	226, 272, 291
Bsh1285I	CGRYCG	1 cut(s)	69
BshFI	GGCC	3 cut(s)	271, 483, 560
BsiEI	CGRYCG	1 cut(s)	69
BsiSI	CCGG	4 cut(s)	94, 492, 704, 743
BslFI	GGGAC	1 cut(s)	731
BslI	CCNNNNNNNGG	1 cut(s)	625
BsmAI	GTCTC	2 cut(s)	15, 136
BsmFI	GGGAC	1 cut(s)	731
BsmI	GAATGC	1 cut(s)	614
BsnI	GGCC	3 cut(s)	271, 483, 560
Bso31I	GGTCTC	1 cut(s)	15
Bsp1286I	GDGCHC	1 cut(s)	536
Bsp143I	GATC	4 cut(s)	104, 514, 628, 649
BspACI	CCGC	5 cut(s)	4, 36, 50, 65, 632
BspANI	GGCC	3 cut(s)	271, 483, 560
BspLI	GGNNCC	2 cut(s)	73, 630
BspMAI	CTGCAG	1 cut(s)	309
BspPI	GGATC	3 cut(s)	522, 623, 636
BspTNI	GGTCTC	1 cut(s)	15
BssMI	GATC	4 cut(s)	104, 514, 628, 649
BssNI	GRCGYC	1 cut(s)	446
BstACI	GRCGYC	1 cut(s)	446
BstC8I	GCNNGC	3 cut(s)	318, 485, 497
BstF5I	GGATG	2 cut(s)	615, 735
BstKTI	GATC	4 cut(s)	107, 517, 631, 652
BstMAI	GTCTC	2 cut(s)	15, 136
BstMBI	GATC	4 cut(s)	104, 514, 628, 649
BstMCI	CGRYCG	1 cut(s)	69
BstMWI	GCNNNNNNNGC	2 cut(s)	313, 582
BstSCI	CCNGG	1 cut(s)	490
BstSFI	CTRYAG	1 cut(s)	305
BstV1I	GCAGC	3 cut(s)	226, 272, 291
BstV2I	GAAGAC	1 cut(s)	483
BstX2I	RGATCY	1 cut(s)	628
BstYI	RGATCY	1 cut(s)	628
BsuI	GTATCC	1 cut(s)	739
BsuRI	GGCC	3 cut(s)	271, 483, 560
BtsCI	GGATG	2 cut(s)	615, 735
BtsI	GCAGTG	1 cut(s)	314
BtsIMutI	CAGTG	1 cut(s)	314
Cac8I	GCNNGC	3 cut(s)	318, 485, 497
Cfr13I	GGNCC	2 cut(s)	71, 521
CseI	GACGC	1 cut(s)	435
CviAII	CATG	2 cut(s)	518, 683
CviJI	RGCY	9 cut(s)	271, 304, 320, 351, 483, 495, 534, 560, 670
CviKI_1	RGCY	9 cut(s)	271, 304, 320, 351, 483, 495, 534, 560, 670
DpnI	GATC	4 cut(s)	106, 516, 630, 651
DpnII	GATC	4 cut(s)	104, 514, 628, 649
DriI	GACNNNNNGTC	1 cut(s)	724
EaeI	YGGCCR	1 cut(s)	558
Eam1105I	GACNNNNNGTC	1 cut(s)	724
Eco24I	GRGCYC	1 cut(s)	536
Eco31I	GGTCTC	1 cut(s)	15
Eco32I	GATATC	1 cut(s)	783
Eco47I	GGWCC	2 cut(s)	71, 521
EcoRV	GATATC	1 cut(s)	783
EcoT38I	GRGCYC	1 cut(s)	536
FaeI	CATG	2 cut(s)	521, 686
FaiI	YATR	6 cut(s)	227, 505, 519, 587, 684, 714
FaqI	GGGAC	1 cut(s)	731
FatI	CATG	2 cut(s)	517, 682
FauI	CCCGC	1 cut(s)	43
FblI	GTMKAC	1 cut(s)	132
Fnu4HI	GCNGC	4 cut(s)	37, 215, 261, 305
FokI	GGATG	2 cut(s)	602, 722
FriOI	GRGCYC	1 cut(s)	536
Fsp4HI	GCNGC	4 cut(s)	37, 215, 261, 305
FspBI	CTAG	3 cut(s)	14, 423, 473
GluI	GCNGC	4 cut(s)	37, 215, 261, 305
HaeIII	GGCC	3 cut(s)	271, 483, 560
HapII	CCGG	4 cut(s)	94, 492, 704, 743
HgaI	GACGC	1 cut(s)	435
Hin1I	GRCGYC	1 cut(s)	446
Hin1II	CATG	2 cut(s)	521, 686
HincII	GTYRAC	2 cut(s)	373, 541
HindII	GTYRAC	2 cut(s)	373, 541
HinfI	GANTC	8 cut(s)	22, 116, 144, 466, 594, 686, 691, 709
HpaII	CCGG	4 cut(s)	94, 492, 704, 743
HphI	GGTGA	2 cut(s)	19, 718
Hpy166II	GTNNAC	4 cut(s)	133, 373, 465, 541
Hpy188I	TCNGA	4 cut(s)	71, 104, 593, 772
Hpy188III	TCNNGA	1 cut(s)	148
Hpy8I	GTNNAC	4 cut(s)	133, 373, 465, 541
Hpy99I	CGWCG	1 cut(s)	451
HpyAV	CCTTC	3 cut(s)	40, 154, 261
HpyCH4V	TGCA	4 cut(s)	249, 307, 327, 682
HpyF10VI	GCNNNNNNNGC	2 cut(s)	313, 582
Hsp92I	GRCGYC	1 cut(s)	446
Hsp92II	CATG	2 cut(s)	521, 686
Kzo9I	GATC	4 cut(s)	104, 514, 628, 649
LpnPI	CCDG	6 cut(s)	107, 241, 497, 505, 717, 756
Lsp1109I	GCAGC	3 cut(s)	226, 272, 291
LweI	GCATC	1 cut(s)	409
MaeI	CTAG	3 cut(s)	14, 423, 473
MaeIII	GTNAC	1 cut(s)	658
MalI	GATC	4 cut(s)	106, 516, 630, 651
MboI	GATC	4 cut(s)	104, 514, 628, 649
MboII	GAAGA	3 cut(s)	55, 303, 488
MfeI	CAATTG	1 cut(s)	565
MflI	RGATCY	1 cut(s)	628
MhlI	GDGCHC	1 cut(s)	536
MlsI	TGGCCA	1 cut(s)	560
MluCI	AATT	5 cut(s)	82, 222, 355, 565, 788
MluNI	TGGCCA	1 cut(s)	560
MlyI	GAGTC	3 cut(s)	110, 138, 460
MmeI	TCCRAC	2 cut(s)	49, 364
MnlI	CCTC	9 cut(s)	55, 98, 101, 131, 237, 403, 453, 518, 739
Mox20I	TGGCCA	1 cut(s)	560
MscI	TGGCCA	1 cut(s)	560
Msp20I	TGGCCA	1 cut(s)	560
MspA1I	CMGCKG	1 cut(s)	36
MspI	CCGG	4 cut(s)	94, 492, 704, 743
MspR9I	CCNGG	1 cut(s)	492
MunI	CAATTG	1 cut(s)	565
Mva1269I	GAATGC	1 cut(s)	614
MwoI	GCNNNNNNNGC	2 cut(s)	313, 582
NciI	CCSGG	1 cut(s)	492
NdeII	GATC	4 cut(s)	104, 514, 628, 649
NlaIII	CATG	2 cut(s)	521, 686
NlaIV	GGNNCC	2 cut(s)	73, 630
PctI	GAATGC	1 cut(s)	614
PfeI	GAWTC	5 cut(s)	22, 594, 686, 691, 709
PkrI	GCNGC	4 cut(s)	38, 216, 262, 306
PleI	GAGTC	3 cut(s)	110, 138, 460
PpsI	GAGTC	3 cut(s)	110, 138, 460
PspN4I	GGNNCC	2 cut(s)	73, 630
PspPI	GGNCC	2 cut(s)	71, 521
PstI	CTGCAG	1 cut(s)	309
PsuI	RGATCY	1 cut(s)	628
SatI	GCNGC	4 cut(s)	37, 215, 261, 305
Sau3AI	GATC	4 cut(s)	104, 514, 628, 649
Sau96I	GGNCC	2 cut(s)	71, 521
SchI	GAGTC	3 cut(s)	110, 138, 460
ScrFI	CCNGG	1 cut(s)	492
SduI	GDGCHC	1 cut(s)	536
SetI	ASST	4 cut(s)	248, 306, 464, 510
SfaNI	GCATC	1 cut(s)	409
SfcI	CTRYAG	1 cut(s)	305
SinI	GGWCC	2 cut(s)	71, 521
SmlI	CTYRAG	2 cut(s)	509, 635
SmoI	CTYRAG	2 cut(s)	509, 635
Sse9I	AATT	5 cut(s)	82, 222, 355, 565, 788
SsiI	CCGC	5 cut(s)	4, 36, 50, 65, 632
SspMI	CTAG	3 cut(s)	14, 423, 473
StyD4I	CCNGG	1 cut(s)	490
TaqI	TCGA	4 cut(s)	149, 364, 551, 689
TaqII	GACCGA	1 cut(s)	538
TasI	AATT	5 cut(s)	82, 222, 355, 565, 788
TauI	GCSGC	1 cut(s)	39
TfiI	GAWTC	5 cut(s)	22, 594, 686, 691, 709
TscAI	CASTG	1 cut(s)	314
TseI	GCWGC	3 cut(s)	214, 260, 304
TspDTI	ATGAA	4 cut(s)	268, 586, 683, 701
TspGWI	ACGGA	2 cut(s)	128, 641
TspRI	CASTG	1 cut(s)	314
VpaK11BI	GGWCC	2 cut(s)	71, 521
XapI	RAATTY	3 cut(s)	82, 355, 788
XmiI	GTMKAC	1 cut(s)	132
XspI	CTAG	3 cut(s)	14, 423, 473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.