Rw4G024000

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0000621
Physical Location & Seq
Reverse (-)
49840687 .. 49845130
4444 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G024000.1

Sequence Viewer

Length: 375 bp
ATGGAACCAGAGAAAAGACCGTTGAAGGTTGGGCCGTTTGGTTCATATAGTGGAGGAGATTGTTTTGATGATGGAGTTCACTCAACACTGAGGCAAGTGGTGATCTGTTCTAGTCTATCGTCATTACTCTACATTGGTACATCCACATTGAATATGATGACAACGGAAAATCATCTTGGTCACAGAAGAATGCATGGTTGTAGCAATGAGATTGGTGTCGAAAAAACAGAGACGGCACCGCCACCGCCGCCTGCTGCCCTTGGATGTCTTAGTAAGCCGAAAAGTGCTCCTAGGAAGCCCAAGGTTGCTAAAAATAATGGCCCTAAAAACATATCTTACAGGGTTTTGGGGAATGAAGTCAATGGAAGCACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jacalin

Protein Analysis

124

Amino Acids

13.25

Weight (kDa)

9.18

Isoelectric Point (pI)

45.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000621)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g32560 FvH4_3g35880 FvH4_4g19501 FvH4_4g19530 FvH4_4g19531 FvH4_4g19540 FvH4_4g19540
prunus_persica Prupe.1G121600_v2.0.a1 Prupe.1G121700_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0416301 RchiOBHm_Chr4g0424661
rosa_laevigata RLG00000007388 RLG00000007432 RLG00000007434 RLG00000007435 RLG00000007439 RLG00000007441 RLG00000007442 RLG00000007458 RLG00000007465 RLG00000007997 RLG00000008015 RLG00000008016 RLG00000008017 RLG00000035315
rosa_multiflora Rmu_co8150926.1_g000001 Rmu_co8225682.1_g000001 Rmu_co8296077.1_g000001 Rmu_sc0004841.1_g000022 Rmu_sc0006553.1_g000008 Rmu_sc0008889.1_g000002
rosa_roxburghii Rroxscaffold_1G00030220 Rroxscaffold_2G00114820 Rroxscaffold_3G00219510 Rroxscaffold_3G00255600 Rroxscaffold_4G00304060 Rroxscaffold_4G00330360 Rroxscaffold_4G00330400 Rroxscaffold_5G00359920 Rroxscaffold_5G00359930 Rroxscaffold_5G00359960 Rroxscaffold_5G00366600 Rroxscaffold_5G00366630 Rroxscaffold_5G00366640 Rroxscaffold_5G00366710 Rroxscaffold_5G00366970
rosa_rugosa Rorug04G0138400 Rorug04G0138500 Rorug04G0138700 Rorug04G0140600 Rorug04G0199000 Rorug07G0061600
rosa_samantha Rh4AG255800 Rh4AG255900 Rh4AG256000 Rh4AG256200 Rh4BG261200 Rh4BG261300 Rh4BG261600 Rh4CG212100 Rh4CG212800 Rh4CG212900 Rh4CG272300 Rh4CG272500 Rh4CG272600 Rh4CG272800 Rh4CG275800 Rh4DG255800 Rh4DG255900 Rh4DG256200 Rh4DG257200 Rh4DG257300 Rh7BG190600 Rh7CG198100
rosa_wichuraiana Rw1G001980 Rw4G022090 Rw4G024000 Rw4G024010 Rw7G016430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 235
AciI CCGC 3 cut(s) 239, 245, 248
AfaI GTAC 1 cut(s) 139
AgsI TTSAA 2 cut(s) 25, 151
AjuI GAANNNNNNNTTGG 2 cut(s) 159, 191
Alw21I GWGCWC 1 cut(s) 289
Alw26I GTCTC 1 cut(s) 224
AoxI GGCC 2 cut(s) 32, 319
ApeKI GCWGC 1 cut(s) 254
AspA2I CCTAGG 1 cut(s) 290
AspS9I GGNCC 2 cut(s) 32, 320
AsuHPI GGTGA 1 cut(s) 112
AvrII CCTAGG 1 cut(s) 290
BanI GGYRCC 1 cut(s) 235
Bbv12I GWGCWC 1 cut(s) 289
BbvI GCAGC 1 cut(s) 241
BccI CCATC 1 cut(s) 65
BceAI ACGGC 2 cut(s) 19, 249
BcoDI GTCTC 1 cut(s) 224
BfaI CTAG 2 cut(s) 111, 291
BisI GCNGC 2 cut(s) 248, 255
BlnI CCTAGG 1 cut(s) 290
BlsI GCNGC 2 cut(s) 249, 256
BmgT120I GGNCC 2 cut(s) 32, 320
BmiI GGNNCC 2 cut(s) 6, 237
BsaJI CCNNGG 3 cut(s) 259, 290, 300
Bse3DI GCAATG 1 cut(s) 211
BseDI CCNNGG 3 cut(s) 259, 290, 300
BseGI GGATG 2 cut(s) 140, 269
BseMI GCAATG 1 cut(s) 211
BseMII CTCAG 1 cut(s) 80
BseRI GAGGAG 1 cut(s) 69
BseXI GCAGC 1 cut(s) 241
BshFI GGCC 2 cut(s) 34, 321
BshNI GGYRCC 1 cut(s) 235
BsiHKAI GWGCWC 1 cut(s) 289
BsmAI GTCTC 1 cut(s) 224
BsmBI CGTCTC 1 cut(s) 224
BsmI GAATGC 1 cut(s) 195
BsnI GGCC 2 cut(s) 34, 321
Bsp1286I GDGCHC 1 cut(s) 289
Bsp143I GATC 1 cut(s) 102
BspACI CCGC 3 cut(s) 239, 245, 248
BspANI GGCC 2 cut(s) 34, 321
BspCNI CTCAG 1 cut(s) 81
BspLI GGNNCC 2 cut(s) 6, 237
BspT107I GGYRCC 1 cut(s) 235
BsrDI GCAATG 1 cut(s) 211
BssECI CCNNGG 3 cut(s) 259, 290, 300
BssMI GATC 1 cut(s) 102
BssT1I CCWWGG 3 cut(s) 259, 290, 300
Bst4CI ACNGT 1 cut(s) 21
BstC8I GCNNGC 1 cut(s) 252
BstDEI CTNAG 2 cut(s) 89, 269
BstF5I GGATG 2 cut(s) 140, 269
BstKTI GATC 1 cut(s) 105
BstMAI GTCTC 1 cut(s) 224
BstMBI GATC 1 cut(s) 102
BstMWI GCNNNNNNNGC 1 cut(s) 247
BstV1I GCAGC 1 cut(s) 241
BsuRI GGCC 2 cut(s) 34, 321
BtsCI GGATG 2 cut(s) 140, 269
BtsIMutI CAGTG 1 cut(s) 86
Cac8I GCNNGC 1 cut(s) 252
Cfr13I GGNCC 2 cut(s) 32, 320
Csp6I GTAC 1 cut(s) 138
CviAII CATG 2 cut(s) 194, 372
CviJI RGCY 4 cut(s) 34, 277, 298, 321
CviKI_1 RGCY 4 cut(s) 34, 277, 298, 321
CviQI GTAC 1 cut(s) 138
DdeI CTNAG 2 cut(s) 89, 269
DpnI GATC 1 cut(s) 104
DpnII GATC 1 cut(s) 102
Eco130I CCWWGG 3 cut(s) 259, 290, 300
EcoT14I CCWWGG 3 cut(s) 259, 290, 300
EcoT22I ATGCAT 1 cut(s) 195
ErhI CCWWGG 3 cut(s) 259, 290, 300
Esp3I CGTCTC 1 cut(s) 224
FaeI CATG 2 cut(s) 197, 375
FaiI YATR 6 cut(s) 46, 48, 155, 195, 332, 373
FatI CATG 2 cut(s) 193, 371
Fnu4HI GCNGC 2 cut(s) 248, 255
FokI GGATG 2 cut(s) 127, 276
Fsp4HI GCNGC 2 cut(s) 248, 255
FspBI CTAG 2 cut(s) 111, 291
GluI GCNGC 2 cut(s) 248, 255
HaeIII GGCC 2 cut(s) 34, 321
Hin1II CATG 2 cut(s) 197, 375
HphI GGTGA 1 cut(s) 112
Hpy166II GTNNAC 1 cut(s) 79
Hpy8I GTNNAC 1 cut(s) 79
HpyAV CCTTC 1 cut(s) 19
HpyCH4III ACNGT 1 cut(s) 21
HpyCH4V TGCA 1 cut(s) 193
HpyF10VI GCNNNNNNNGC 1 cut(s) 247
HpyF3I CTNAG 2 cut(s) 89, 269
Hsp92II CATG 2 cut(s) 197, 375
Kzo9I GATC 1 cut(s) 102
LmnI GCTCC 1 cut(s) 292
LpnPI CCDG 3 cut(s) 21, 264, 325
Lsp1109I GCAGC 1 cut(s) 241
MaeI CTAG 2 cut(s) 111, 291
MaeIII GTNAC 1 cut(s) 179
MalI GATC 1 cut(s) 104
MboI GATC 1 cut(s) 102
MboII GAAGA 1 cut(s) 198
MhlI GDGCHC 1 cut(s) 289
MnlI CCTC 2 cut(s) 47, 84
Mph1103I ATGCAT 1 cut(s) 195
Mva1269I GAATGC 1 cut(s) 195
MwoI GCNNNNNNNGC 1 cut(s) 247
NdeII GATC 1 cut(s) 102
NlaIII CATG 2 cut(s) 197, 375
NlaIV GGNNCC 2 cut(s) 6, 237
NmuCI GTSAC 1 cut(s) 179
NsiI ATGCAT 1 cut(s) 195
PctI GAATGC 1 cut(s) 195
PkrI GCNGC 2 cut(s) 249, 256
PspN4I GGNNCC 2 cut(s) 6, 237
PspPI GGNCC 2 cut(s) 32, 320
RsaI GTAC 1 cut(s) 139
RsaNI GTAC 1 cut(s) 138
SatI GCNGC 2 cut(s) 248, 255
Sau3AI GATC 1 cut(s) 102
Sau96I GGNCC 2 cut(s) 32, 320
SduI GDGCHC 1 cut(s) 289
SetI ASST 2 cut(s) 30, 306
SsiI CCGC 3 cut(s) 239, 245, 248
SspMI CTAG 2 cut(s) 111, 291
StyI CCWWGG 3 cut(s) 259, 290, 300
TaaI ACNGT 1 cut(s) 21
TaqI TCGA 1 cut(s) 219
TauI GCSGC 1 cut(s) 250
TscAI CASTG 1 cut(s) 93
TseFI GTSAC 1 cut(s) 179
TseI GCWGC 1 cut(s) 254
Tsp45I GTSAC 1 cut(s) 179
TspDTI ATGAA 2 cut(s) 33, 369
TspGWI ACGGA 1 cut(s) 179
TspRI CASTG 1 cut(s) 93
XmaJI CCTAGG 1 cut(s) 290
XspI CTAG 2 cut(s) 111, 291
Zsp2I ATGCAT 1 cut(s) 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.