Rh4CG212900

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0000621
Physical Location & Seq
Forward (+)
44306602 .. 44307645
1044 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG212900.1

Sequence Viewer

Length: 744 bp
ATGAGTTTGAAGGATTATTCTGGTGAGAAAATACTGTGGAAGATTGGGCCCTTTGGATCAGAAAGCGGAGGGGAAAGTTTTGATGATGGAGCTCATTCAACAGTCAGGCAGTTGCTGATAGCTTATGATGGAGTGGGCGTTGGCACCATCCAGATTGAATATGATGACAACGGGATCTCATATCGGGCAGCCAAGCATGGTGATCAGACAGGGTCTGACCATATTGACACGATCAAGCTTGATTATCCGTATGAATATCTGATTTCAGTTCATGGAAGATATTGTAAGTTTTGGCCCTTGCCAACCGTTATTTCCTCCCTTACTTTTAGGAGCAACAAGAGAAGTTACGGACCATATGGAAATGAAGACCAACATGATAAGTATTTTTCAATCCAAGCACCTGGGAATATGATTGTCGGCTTTCATGGTAGGGCTTCTGGGTTTAAGGGTATCCGTGCAATAGGAGCTTACCTGAAACCTATTGATCATCATTATCAGAATGGAAAGTACAATCTCGATGTCATGCCGGCATTACCAAAACCGTCAAATCCTCTGCGTCAAGCTAGATATCCTTCTCAGACCAACCTCAGAAACAAACAAGATGAAGGCGAAGATGACAAACAATTAACATACATAATTGCCGGTAACCAAGTCAACGGAAACGAGGGCGACCGGAATGGAGGTTTCGTTGTTGGAAGTAACATTAATTACATCTTACACCCTGAACTATGGCGGAGTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jacalin

Protein Analysis

247

Amino Acids

27.67

Weight (kDa)

6.5

Isoelectric Point (pI)

36.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Jacalin PF01419 15 - 157 1.8e-33 Jacalin-like lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000621)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g32560 FvH4_3g35880 FvH4_4g19501 FvH4_4g19530 FvH4_4g19531 FvH4_4g19540 FvH4_4g19540
prunus_persica Prupe.1G121600_v2.0.a1 Prupe.1G121700_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0416301 RchiOBHm_Chr4g0424661
rosa_laevigata RLG00000007388 RLG00000007432 RLG00000007434 RLG00000007435 RLG00000007439 RLG00000007441 RLG00000007442 RLG00000007458 RLG00000007465 RLG00000007997 RLG00000008015 RLG00000008016 RLG00000008017 RLG00000035315
rosa_multiflora Rmu_co8150926.1_g000001 Rmu_co8225682.1_g000001 Rmu_co8296077.1_g000001 Rmu_sc0004841.1_g000022 Rmu_sc0006553.1_g000008 Rmu_sc0008889.1_g000002
rosa_roxburghii Rroxscaffold_1G00030220 Rroxscaffold_2G00114820 Rroxscaffold_3G00219510 Rroxscaffold_3G00255600 Rroxscaffold_4G00304060 Rroxscaffold_4G00330360 Rroxscaffold_4G00330400 Rroxscaffold_5G00359920 Rroxscaffold_5G00359930 Rroxscaffold_5G00359960 Rroxscaffold_5G00366600 Rroxscaffold_5G00366630 Rroxscaffold_5G00366640 Rroxscaffold_5G00366710 Rroxscaffold_5G00366970
rosa_rugosa Rorug04G0138400 Rorug04G0138500 Rorug04G0138700 Rorug04G0140600 Rorug04G0199000 Rorug07G0061600
rosa_samantha Rh4AG255800 Rh4AG255900 Rh4AG256000 Rh4AG256200 Rh4BG261200 Rh4BG261300 Rh4BG261600 Rh4CG212100 Rh4CG212800 Rh4CG212900 Rh4CG272300 Rh4CG272500 Rh4CG272600 Rh4CG272800 Rh4CG275800 Rh4DG255800 Rh4DG255900 Rh4DG256200 Rh4DG257200 Rh4DG257300 Rh7BG190600 Rh7CG198100
rosa_wichuraiana Rw1G001980 Rw4G022090 Rw4G024000 Rw4G024010 Rw7G016430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 143
AciI CCGC 2 cut(s) 66, 733
AclWI GGATC 2 cut(s) 64, 182
AfaI GTAC 1 cut(s) 509
AgsI TTSAA 4 cut(s) 10, 99, 158, 390
AjnI CCWGG 1 cut(s) 400
AjuI GAANNNNNNNTTGG 2 cut(s) 295, 327
AluBI AGCT 5 cut(s) 92, 122, 238, 467, 563
AluI AGCT 5 cut(s) 92, 122, 238, 467, 563
Alw21I GWGCWC 1 cut(s) 94
AlwI GGATC 2 cut(s) 64, 182
AlwNI CAGNNNCTG 2 cut(s) 115, 215
AoxI GGCC 2 cut(s) 47, 293
ApaI GGGCCC 1 cut(s) 51
ApeKI GCWGC 1 cut(s) 188
AseI ATTAAT 1 cut(s) 705
AspS9I GGNCC 4 cut(s) 47, 48, 294, 350
AsuHPI GGTGA 2 cut(s) 35, 212
AvaII GGWCC 1 cut(s) 350
BaeGI GKGCMC 1 cut(s) 51
BanI GGYRCC 1 cut(s) 143
BanII GRGCYC 2 cut(s) 51, 94
BbsI GAAGAC 1 cut(s) 372
Bbv12I GWGCWC 1 cut(s) 94
BbvI GCAGC 1 cut(s) 200
BccI CCATC 3 cut(s) 80, 122, 155
BciT130I CCWGG 1 cut(s) 402
BciVI GTATCC 1 cut(s) 461
BclI TGATCA 2 cut(s) 202, 484
BfaI CTAG 1 cut(s) 564
BfuI GTATCC 1 cut(s) 461
BisI GCNGC 1 cut(s) 189
BlsI GCNGC 1 cut(s) 190
Bme1390I CCNGG 1 cut(s) 402
Bme18I GGWCC 1 cut(s) 350
BmgT120I GGNCC 4 cut(s) 47, 48, 294, 350
BmiI GGNNCC 2 cut(s) 49, 145
BmrFI CCNGG 1 cut(s) 402
BpiI GAAGAC 1 cut(s) 372
BsaJI CCNNGG 1 cut(s) 401
BsaWI WCCGGW 1 cut(s) 672
BsaXI ACNNNNNCTCC 4 cut(s) 123, 153, 672, 702
Bse118I RCCGGY 2 cut(s) 526, 641
BseBI CCWGG 1 cut(s) 402
BseDI CCNNGG 1 cut(s) 401
BseGI GGATG 1 cut(s) 147
BseMII CTCAG 2 cut(s) 590, 601
BseSI GKGCMC 1 cut(s) 51
BseXI GCAGC 1 cut(s) 200
Bsh1285I CGRYCG 1 cut(s) 673
BshFI GGCC 2 cut(s) 49, 295
BshNI GGYRCC 1 cut(s) 143
BsiEI CGRYCG 1 cut(s) 673
BsiHKAI GWGCWC 1 cut(s) 94
BsiSI CCGG 3 cut(s) 527, 642, 673
BsnI GGCC 2 cut(s) 49, 295
Bsp120I GGGCCC 1 cut(s) 47
Bsp1286I GDGCHC 2 cut(s) 51, 94
Bsp143I GATC 5 cut(s) 56, 174, 202, 231, 484
BspACI CCGC 2 cut(s) 66, 733
BspANI GGCC 2 cut(s) 49, 295
BspCNI CTCAG 2 cut(s) 589, 600
BspLI GGNNCC 2 cut(s) 49, 145
BspPI GGATC 2 cut(s) 64, 182
BspT107I GGYRCC 1 cut(s) 143
BsrFI RCCGGY 2 cut(s) 526, 641
BssAI RCCGGY 2 cut(s) 526, 641
BssECI CCNNGG 1 cut(s) 401
BssMI GATC 5 cut(s) 56, 174, 202, 231, 484
Bst2UI CCWGG 1 cut(s) 402
Bst4CI ACNGT 4 cut(s) 36, 103, 307, 543
BstC8I GCNNGC 1 cut(s) 528
BstDEI CTNAG 2 cut(s) 576, 587
BstEII GGTNACC 1 cut(s) 644
BstF5I GGATG 1 cut(s) 147
BstKTI GATC 5 cut(s) 59, 177, 205, 234, 487
BstMBI GATC 5 cut(s) 56, 174, 202, 231, 484
BstMCI CGRYCG 1 cut(s) 673
BstMWI GCNNNNNNNGC 1 cut(s) 464
BstNI CCWGG 1 cut(s) 402
BstPI GGTNACC 1 cut(s) 644
BstSCI CCNGG 1 cut(s) 400
BstSLI GKGCMC 1 cut(s) 51
BstV1I GCAGC 1 cut(s) 200
BstV2I GAAGAC 1 cut(s) 372
BstX2I RGATCY 1 cut(s) 174
BstXI CCANNNNNNTGG 1 cut(s) 401
BstYI RGATCY 1 cut(s) 174
BsuI GTATCC 1 cut(s) 461
BsuRI GGCC 2 cut(s) 49, 295
BtsCI GGATG 1 cut(s) 147
Cac8I GCNNGC 1 cut(s) 528
CaiI CAGNNNCTG 2 cut(s) 115, 215
Cfr10I RCCGGY 2 cut(s) 526, 641
Cfr13I GGNCC 4 cut(s) 47, 48, 294, 350
CseI GACGC 1 cut(s) 545
Csp6I GTAC 1 cut(s) 508
CviAII CATG 5 cut(s) 197, 272, 374, 425, 523
CviQI GTAC 1 cut(s) 508
DdeI CTNAG 2 cut(s) 576, 587
DpnI GATC 5 cut(s) 58, 176, 204, 233, 486
DpnII GATC 5 cut(s) 56, 174, 202, 231, 484
Ecl136II GAGCTC 1 cut(s) 92
Eco24I GRGCYC 2 cut(s) 51, 94
Eco32I GATATC 1 cut(s) 569
Eco47I GGWCC 1 cut(s) 350
Eco53kI GAGCTC 1 cut(s) 92
Eco91I GGTNACC 1 cut(s) 644
EcoICRI GAGCTC 1 cut(s) 92
EcoO109I RGGNCCY 1 cut(s) 48
EcoO65I GGTNACC 1 cut(s) 644
EcoRII CCWGG 1 cut(s) 400
EcoRV GATATC 1 cut(s) 569
EcoT38I GRGCYC 2 cut(s) 51, 94
FaeI CATG 5 cut(s) 200, 275, 377, 428, 526
FatI CATG 5 cut(s) 196, 271, 373, 424, 522
FauNDI CATATG 1 cut(s) 355
FbaI TGATCA 2 cut(s) 202, 484
Fnu4HI GCNGC 1 cut(s) 189
FokI GGATG 1 cut(s) 134
FriOI GRGCYC 2 cut(s) 51, 94
Fsp4HI GCNGC 1 cut(s) 189
FspBI CTAG 1 cut(s) 564
GluI GCNGC 1 cut(s) 189
HaeIII GGCC 2 cut(s) 49, 295
HapII CCGG 3 cut(s) 527, 642, 673
HgaI GACGC 1 cut(s) 545
Hin1II CATG 5 cut(s) 200, 275, 377, 428, 526
HincII GTYRAC 1 cut(s) 655
HindII GTYRAC 1 cut(s) 655
HindIII AAGCTT 1 cut(s) 236
HpaII CCGG 3 cut(s) 527, 642, 673
HphI GGTGA 2 cut(s) 35, 212
Hpy166II GTNNAC 1 cut(s) 655
Hpy188I TCNGA 7 cut(s) 61, 207, 217, 261, 498, 579, 590
Hpy188III TCNNGA 2 cut(s) 151, 515
Hpy8I GTNNAC 1 cut(s) 655
HpyAV CCTTC 3 cut(s) 4, 582, 599
HpyCH4III ACNGT 4 cut(s) 36, 103, 307, 543
HpyCH4V TGCA 1 cut(s) 458
HpyF10VI GCNNNNNNNGC 1 cut(s) 464
HpyF3I CTNAG 2 cut(s) 576, 587
Hsp92II CATG 5 cut(s) 200, 275, 377, 428, 526
KroI GCCGGC 1 cut(s) 526
KroNI GCCGGC 1 cut(s) 528
Ksp22I TGATCA 2 cut(s) 202, 484
Kzo9I GATC 5 cut(s) 56, 174, 202, 231, 484
LmnI GCTCC 3 cut(s) 89, 330, 464
Lsp1109I GCAGC 1 cut(s) 200
MaeI CTAG 1 cut(s) 564
MaeIII GTNAC 3 cut(s) 344, 644, 698
MalI GATC 5 cut(s) 58, 176, 204, 233, 486
MboI GATC 5 cut(s) 56, 174, 202, 231, 484
MboII GAAGA 4 cut(s) 52, 288, 377, 623
MflI RGATCY 1 cut(s) 174
MhlI GDGCHC 2 cut(s) 51, 94
MluCI AATT 3 cut(s) 623, 636, 706
MmeI TCCRAC 1 cut(s) 673
MnlI CCTC 6 cut(s) 62, 325, 561, 596, 658, 674
MroNI GCCGGC 1 cut(s) 526
MseI TTAA 4 cut(s) 444, 626, 705, 742
MspI CCGG 3 cut(s) 527, 642, 673
MspR9I CCNGG 1 cut(s) 402
MvaI CCWGG 1 cut(s) 402
MwoI GCNNNNNNNGC 1 cut(s) 464
NaeI GCCGGC 1 cut(s) 528
NdeI CATATG 1 cut(s) 355
NdeII GATC 5 cut(s) 56, 174, 202, 231, 484
NgoMIV GCCGGC 1 cut(s) 526
NlaIII CATG 5 cut(s) 200, 275, 377, 428, 526
NlaIV GGNNCC 2 cut(s) 49, 145
PdiI GCCGGC 1 cut(s) 528
PflFI GACNNNGTC 1 cut(s) 211
PkrI GCNGC 1 cut(s) 190
PshBI ATTAAT 1 cut(s) 705
Psp124BI GAGCTC 1 cut(s) 94
Psp6I CCWGG 1 cut(s) 400
PspEI GGTNACC 1 cut(s) 644
PspGI CCWGG 1 cut(s) 400
PspN4I GGNNCC 2 cut(s) 49, 145
PspOMI GGGCCC 1 cut(s) 47
PspPI GGNCC 4 cut(s) 47, 48, 294, 350
PstNI CAGNNNCTG 2 cut(s) 115, 215
PsuI RGATCY 1 cut(s) 174
PsyI GACNNNGTC 1 cut(s) 211
RsaI GTAC 1 cut(s) 509
RsaNI GTAC 1 cut(s) 508
SacI GAGCTC 1 cut(s) 94
SaqAI TTAA 4 cut(s) 444, 626, 705, 742
SatI GCNGC 1 cut(s) 189
Sau3AI GATC 5 cut(s) 56, 174, 202, 231, 484
Sau96I GGNCC 4 cut(s) 47, 48, 294, 350
ScrFI CCNGG 1 cut(s) 402
SduI GDGCHC 2 cut(s) 51, 94
SinI GGWCC 1 cut(s) 350
Sse9I AATT 3 cut(s) 623, 636, 706
SsiI CCGC 2 cut(s) 66, 733
SspMI CTAG 1 cut(s) 564
SstI GAGCTC 1 cut(s) 94
StyD4I CCNGG 1 cut(s) 400
TaaI ACNGT 4 cut(s) 36, 103, 307, 543
TaqI TCGA 1 cut(s) 516
TasI AATT 3 cut(s) 623, 636, 706
TatI WGTACW 1 cut(s) 507
Tru1I TTAA 4 cut(s) 444, 626, 705, 742
Tru9I TTAA 4 cut(s) 444, 626, 705, 742
TseI GCWGC 1 cut(s) 188
TspDTI ATGAA 5 cut(s) 260, 267, 378, 413, 618
TspGWI ACGGA 4 cut(s) 237, 363, 443, 672
Tth111I GACNNNGTC 1 cut(s) 211
VpaK11BI GGWCC 1 cut(s) 350
VspI ATTAAT 1 cut(s) 705
XspI CTAG 1 cut(s) 564
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.