Rh4CG272300

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0000621
Physical Location & Seq
Reverse (-)
52660439 .. 52660909
471 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG272300.1

Sequence Viewer

Length: 471 bp
ATGGCGTATTATGCCGATCTGATGAATCCAGCCGTCATGTTCGCCGCCAATGGATTAGTTCCAAATCAGCCTTCGTATTATACCAACTATGGCGCTCAAGCTCCACCTCATAATGAAGATCCAGGTTATGCTACTCCTCCTCCTTCATCTTATGGATACTATAACCCTAACCATCCATCACCGGGCGGTCCTGGTTCACCTGCTCATGCGCCATATGGCTATTCCGCTCCTCCTCCATCTTATAATAATGGATACTATGACCATCCTTTCTATCAGGCGCCTGTTCGACGTCCTAGTAAACCCAGGGCTCCTAGTAAGCCCAAGGCTTGCACTCGAAACAACATAATTTACAGGGTTCAAGGAAATCGAGTCAGTGGAAACACTGGGCACCATAATGGAGTCTTCAACGTTGGCAACAAAAATTCCAGTCGCGAGGTGGACGATCACAATGAGGAAGATGAAGAAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jacalin

Protein Analysis

156

Amino Acids

17.11

Weight (kDa)

6.36

Isoelectric Point (pI)

68.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000621)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g32560 FvH4_3g35880 FvH4_4g19501 FvH4_4g19530 FvH4_4g19531 FvH4_4g19540 FvH4_4g19540
prunus_persica Prupe.1G121600_v2.0.a1 Prupe.1G121700_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0416301 RchiOBHm_Chr4g0424661
rosa_laevigata RLG00000007388 RLG00000007432 RLG00000007434 RLG00000007435 RLG00000007439 RLG00000007441 RLG00000007442 RLG00000007458 RLG00000007465 RLG00000007997 RLG00000008015 RLG00000008016 RLG00000008017 RLG00000035315
rosa_multiflora Rmu_co8150926.1_g000001 Rmu_co8225682.1_g000001 Rmu_co8296077.1_g000001 Rmu_sc0004841.1_g000022 Rmu_sc0006553.1_g000008 Rmu_sc0008889.1_g000002
rosa_roxburghii Rroxscaffold_1G00030220 Rroxscaffold_2G00114820 Rroxscaffold_3G00219510 Rroxscaffold_3G00255600 Rroxscaffold_4G00304060 Rroxscaffold_4G00330360 Rroxscaffold_4G00330400 Rroxscaffold_5G00359920 Rroxscaffold_5G00359930 Rroxscaffold_5G00359960 Rroxscaffold_5G00366600 Rroxscaffold_5G00366630 Rroxscaffold_5G00366640 Rroxscaffold_5G00366710 Rroxscaffold_5G00366970
rosa_rugosa Rorug04G0138400 Rorug04G0138500 Rorug04G0138700 Rorug04G0140600 Rorug04G0199000 Rorug07G0061600
rosa_samantha Rh4AG255800 Rh4AG255900 Rh4AG256000 Rh4AG256200 Rh4BG261200 Rh4BG261300 Rh4BG261600 Rh4CG212100 Rh4CG212800 Rh4CG212900 Rh4CG272300 Rh4CG272500 Rh4CG272600 Rh4CG272800 Rh4CG275800 Rh4DG255800 Rh4DG255900 Rh4DG256200 Rh4DG257200 Rh4DG257300 Rh7BG190600 Rh7CG198100
rosa_wichuraiana Rw1G001980 Rw4G022090 Rw4G024000 Rw4G024010 Rw7G016430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 243
AarI CACCTGC 1 cut(s) 208
AatII GACGTC 1 cut(s) 292
Acc36I ACCTGC 1 cut(s) 208
AccB1I GGYRCC 2 cut(s) 277, 387
AccBSI CCGCTC 1 cut(s) 227
AccII CGCG 1 cut(s) 432
AciI CCGC 3 cut(s) 45, 186, 225
AclI AACGTT 1 cut(s) 408
AclWI GGATC 1 cut(s) 113
AcsI RAATTY 1 cut(s) 421
AcyI GRCGYC 2 cut(s) 278, 289
AfiI CCNNNNNNNGG 1 cut(s) 182
AgsI TTSAA 2 cut(s) 359, 406
AjnI CCWGG 3 cut(s) 121, 190, 302
AjuI GAANNNNNNNTTGG 2 cut(s) 55, 87
AluBI AGCT 1 cut(s) 101
AluI AGCT 1 cut(s) 101
AlwI GGATC 1 cut(s) 113
ApoI RAATTY 1 cut(s) 421
AspLEI GCGC 3 cut(s) 95, 211, 280
AspS9I GGNCC 1 cut(s) 188
AsuC2I CCSGG 1 cut(s) 183
AsuHPI GGTGA 2 cut(s) 171, 189
AvaII GGWCC 1 cut(s) 188
BaeGI GKGCMC 1 cut(s) 390
BanI GGYRCC 2 cut(s) 277, 387
BanII GRGCYC 1 cut(s) 310
BbsI GAAGAC 1 cut(s) 394
BccI CCATC 4 cut(s) 180, 184, 244, 270
BceAI ACGGC 1 cut(s) 17
BciT130I CCWGG 3 cut(s) 123, 192, 304
BciVI GTATCC 2 cut(s) 149, 245
BcnI CCSGG 1 cut(s) 183
BfaI CTAG 2 cut(s) 294, 312
BfoI RGCGCY 2 cut(s) 96, 281
BfuAI ACCTGC 1 cut(s) 208
BfuI GTATCC 2 cut(s) 149, 245
BisI GCNGC 1 cut(s) 45
BlsI GCNGC 1 cut(s) 46
Bme1390I CCNGG 4 cut(s) 123, 183, 192, 304
Bme18I GGWCC 1 cut(s) 188
BmgT120I GGNCC 1 cut(s) 188
BmiI GGNNCC 3 cut(s) 279, 309, 389
BmrFI CCNGG 4 cut(s) 123, 183, 192, 304
BmrI ACTGGG 1 cut(s) 393
BmuI ACTGGG 1 cut(s) 393
BpiI GAAGAC 1 cut(s) 394
BpuEI CTTGAG 1 cut(s) 81
BpuMI CCSGG 1 cut(s) 183
BsaHI GRCGYC 2 cut(s) 278, 289
BsaJI CCNNGG 3 cut(s) 302, 303, 321
BsaXI ACNNNNNCTCC 2 cut(s) 124, 154
Bsc4I CCNNNNNNNGG 1 cut(s) 182
Bse1I ACTGG 2 cut(s) 388, 426
BseBI CCWGG 3 cut(s) 123, 192, 304
BseDI CCNNGG 3 cut(s) 302, 303, 321
BseGI GGATG 2 cut(s) 172, 262
BseLI CCNNNNNNNGG 1 cut(s) 182
BseNI ACTGG 2 cut(s) 388, 426
BseRI GAGGAG 4 cut(s) 126, 129, 219, 222
BseSI GKGCMC 1 cut(s) 390
Bsh1236I CGCG 1 cut(s) 432
BshNI GGYRCC 2 cut(s) 277, 387
BsiSI CCGG 1 cut(s) 182
BslI CCNNNNNNNGG 1 cut(s) 182
Bsp1286I GDGCHC 2 cut(s) 310, 390
Bsp143I GATC 3 cut(s) 16, 118, 442
Bsp68I TCGCGA 1 cut(s) 432
BspACI CCGC 3 cut(s) 45, 186, 225
BspFNI CGCG 1 cut(s) 432
BspLI GGNNCC 3 cut(s) 279, 309, 389
BspMI ACCTGC 1 cut(s) 208
BspPI GGATC 1 cut(s) 113
BspT107I GGYRCC 2 cut(s) 277, 387
BsrBI CCGCTC 1 cut(s) 227
BsrI ACTGG 2 cut(s) 388, 426
BssECI CCNNGG 3 cut(s) 302, 303, 321
BssMI GATC 3 cut(s) 16, 118, 442
BssNI GRCGYC 2 cut(s) 278, 289
BssT1I CCWWGG 1 cut(s) 321
Bst2UI CCWGG 3 cut(s) 123, 192, 304
Bst6I CTCTTC 1 cut(s) 459
BstACI GRCGYC 2 cut(s) 278, 289
BstC8I GCNNGC 1 cut(s) 328
BstF5I GGATG 2 cut(s) 172, 262
BstFNI CGCG 1 cut(s) 432
BstH2I RGCGCY 2 cut(s) 96, 281
BstHHI GCGC 3 cut(s) 95, 211, 280
BstKTI GATC 3 cut(s) 19, 121, 445
BstMBI GATC 3 cut(s) 16, 118, 442
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNI CCWGG 3 cut(s) 123, 192, 304
BstSCI CCNGG 4 cut(s) 121, 181, 190, 302
BstSLI GKGCMC 1 cut(s) 390
BstUI CGCG 1 cut(s) 432
BstV2I GAAGAC 1 cut(s) 394
BstX2I RGATCY 1 cut(s) 118
BstYI RGATCY 1 cut(s) 118
BsuI GTATCC 2 cut(s) 149, 245
BtsCI GGATG 2 cut(s) 172, 262
BtsIMutI CAGTG 2 cut(s) 379, 381
BtuMI TCGCGA 1 cut(s) 432
BveI ACCTGC 1 cut(s) 208
Cac8I GCNNGC 1 cut(s) 328
CfoI GCGC 3 cut(s) 95, 211, 280
Cfr13I GGNCC 1 cut(s) 188
CviAII CATG 2 cut(s) 37, 206
CviJI RGCY 7 cut(s) 32, 70, 101, 219, 308, 319, 326
CviKI_1 RGCY 7 cut(s) 32, 70, 101, 219, 308, 319, 326
DinI GGCGCC 1 cut(s) 279
DpnI GATC 3 cut(s) 18, 120, 444
DpnII GATC 3 cut(s) 16, 118, 442
Eam1104I CTCTTC 1 cut(s) 459
EarI CTCTTC 1 cut(s) 459
Eco130I CCWWGG 1 cut(s) 321
Eco24I GRGCYC 1 cut(s) 310
Eco47I GGWCC 1 cut(s) 188
EcoRII CCWGG 3 cut(s) 121, 190, 302
EcoT14I CCWWGG 1 cut(s) 321
EcoT38I GRGCYC 1 cut(s) 310
EgeI GGCGCC 1 cut(s) 279
EheI GGCGCC 1 cut(s) 279
ErhI CCWWGG 1 cut(s) 321
FaeI CATG 2 cut(s) 40, 209
FatI CATG 2 cut(s) 36, 205
FauNDI CATATG 1 cut(s) 214
Fnu4HI GCNGC 1 cut(s) 45
FokI GGATG 2 cut(s) 159, 249
FriOI GRGCYC 1 cut(s) 310
Fsp4HI GCNGC 1 cut(s) 45
FspBI CTAG 2 cut(s) 294, 312
GlaI GCGC 3 cut(s) 94, 210, 279
GluI GCNGC 1 cut(s) 45
HaeII RGCGCY 2 cut(s) 96, 281
HapII CCGG 1 cut(s) 182
HhaI GCGC 3 cut(s) 95, 211, 280
Hin1I GRCGYC 2 cut(s) 278, 289
Hin1II CATG 2 cut(s) 40, 209
Hin6I GCGC 3 cut(s) 93, 209, 278
HinP1I GCGC 3 cut(s) 93, 209, 278
HinfI GANTC 3 cut(s) 25, 369, 399
HpaII CCGG 1 cut(s) 182
HphI GGTGA 2 cut(s) 171, 189
Hpy166II GTNNAC 3 cut(s) 197, 299, 439
Hpy188I TCNGA 1 cut(s) 21
Hpy188III TCNNGA 1 cut(s) 431
Hpy8I GTNNAC 3 cut(s) 197, 299, 439
Hpy99I CGWCG 1 cut(s) 291
HpyAV CCTTC 2 cut(s) 81, 153
HpyCH4IV ACGT 2 cut(s) 289, 408
HpyCH4V TGCA 1 cut(s) 330
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpySE526I ACGT 2 cut(s) 289, 408
Hsp92I GRCGYC 2 cut(s) 278, 289
Hsp92II CATG 2 cut(s) 40, 209
HspAI GCGC 3 cut(s) 93, 209, 278
KasI GGCGCC 1 cut(s) 277
Kzo9I GATC 3 cut(s) 16, 118, 442
LmnI GCTCC 3 cut(s) 106, 232, 313
MaeI CTAG 2 cut(s) 294, 312
MaeII ACGT 2 cut(s) 289, 408
MalI GATC 3 cut(s) 18, 120, 444
MbiI CCGCTC 1 cut(s) 227
MboI GATC 3 cut(s) 16, 118, 442
MboII GAAGA 3 cut(s) 128, 394, 467
MflI RGATCY 1 cut(s) 118
MhlI GDGCHC 2 cut(s) 310, 390
MluCI AATT 2 cut(s) 345, 421
Mly113I GGCGCC 1 cut(s) 278
MlyI GAGTC 2 cut(s) 378, 408
MnlI CCTC 7 cut(s) 117, 147, 150, 240, 243, 427, 445
MslI CAYNNNNRTG 1 cut(s) 393
MspI CCGG 1 cut(s) 182
MspR9I CCNGG 4 cut(s) 123, 183, 192, 304
MvaI CCWGG 3 cut(s) 123, 192, 304
MvnI CGCG 1 cut(s) 432
MwoI GCNNNNNNNGC 1 cut(s) 11
NarI GGCGCC 1 cut(s) 278
NciI CCSGG 1 cut(s) 183
NdeI CATATG 1 cut(s) 214
NdeII GATC 3 cut(s) 16, 118, 442
NlaIII CATG 2 cut(s) 40, 209
NlaIV GGNNCC 3 cut(s) 279, 309, 389
NruI TCGCGA 1 cut(s) 432
PaqCI CACCTGC 1 cut(s) 208
PasI CCCWGGG 1 cut(s) 303
PfeI GAWTC 1 cut(s) 25
PkrI GCNGC 1 cut(s) 46
PleI GAGTC 2 cut(s) 377, 407
PluTI GGCGCC 1 cut(s) 281
PpsI GAGTC 2 cut(s) 377, 407
PsiI TTATAA 1 cut(s) 243
Psp1406I AACGTT 1 cut(s) 408
Psp6I CCWGG 3 cut(s) 121, 190, 302
PspGI CCWGG 3 cut(s) 121, 190, 302
PspN4I GGNNCC 3 cut(s) 279, 309, 389
PspPI GGNCC 1 cut(s) 188
PsuI RGATCY 1 cut(s) 118
RruI TCGCGA 1 cut(s) 432
RseI CAYNNNNRTG 1 cut(s) 393
SatI GCNGC 1 cut(s) 45
Sau3AI GATC 3 cut(s) 16, 118, 442
Sau96I GGNCC 1 cut(s) 188
SchI GAGTC 2 cut(s) 378, 408
ScrFI CCNGG 4 cut(s) 123, 183, 192, 304
SduI GDGCHC 2 cut(s) 310, 390
SetI ASST 7 cut(s) 103, 109, 127, 202, 292, 411, 438
SfoI GGCGCC 1 cut(s) 279
SinI GGWCC 1 cut(s) 188
SmiMI CAYNNNNRTG 1 cut(s) 393
SmlI CTYRAG 1 cut(s) 96
SmoI CTYRAG 1 cut(s) 96
Sse9I AATT 2 cut(s) 345, 421
SsiI CCGC 3 cut(s) 45, 186, 225
SspDI GGCGCC 1 cut(s) 277
SspMI CTAG 2 cut(s) 294, 312
StyD4I CCNGG 4 cut(s) 121, 181, 190, 302
StyI CCWWGG 1 cut(s) 321
TaiI ACGT 2 cut(s) 292, 411
TaqI TCGA 3 cut(s) 286, 334, 367
TasI AATT 2 cut(s) 345, 421
TauI GCSGC 1 cut(s) 47
TfiI GAWTC 1 cut(s) 25
TscAI CASTG 2 cut(s) 379, 388
TspDTI ATGAA 3 cut(s) 38, 129, 135
TspRI CASTG 2 cut(s) 379, 388
VpaK11BI GGWCC 1 cut(s) 188
XapI RAATTY 1 cut(s) 421
XcmI CCANNNNNNNNNTGG 1 cut(s) 433
XspI CTAG 2 cut(s) 294, 312
ZraI GACGTC 1 cut(s) 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.