FvH4_3g35880

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000621
Physical Location & Seq
Forward (+)
30783088 .. 30783643
556 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g35880.t1

Sequence Viewer

Length: 444 bp
ATGCCTCCGCCCCTGGGGAAGAGTTTCGATGATTATATTCACTCAACGGTGAGACAGTTGGTGATATGTTATGATCATTACGGGATCAACCACATCCGGATCGAATATGACTTCAACGGAGATTCATTGTGGTCAGACACGCATGGTGATCCCGACAAAGATCAAACTAAAATCACGGTCACGGTCACGGTCACGCTTGATTATCCAGATGAATTTTTGACTTCAATGCACGGCTGTTATGAAAAAATTTTGTTTTTGCCAACCGTAATCACCTCACTTACTTTCGCCAGCAACAAAAAAACTTATGGACCGTTTGGAAGTTCAGCTGGAGTTAACTTTTCAATCAATGTGCCGAACAGTAAGATTGTTGGGTTTCATGGCAGGTCCAGCCGCTACAATGGACTTCGTGCAATAGGGGCTCATCTAAAGCCTCTTGAATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_3 LRR_8 NB-ARC TIR

Protein Analysis

148

Amino Acids

16.42

Weight (kDa)

6.35

Isoelectric Point (pI)

37.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Jacalin PF01419 6 - 141 2.4e-32 Jacalin-like lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000621)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g32560 FvH4_3g35880 FvH4_4g19501 FvH4_4g19530 FvH4_4g19531 FvH4_4g19540 FvH4_4g19540
prunus_persica Prupe.1G121600_v2.0.a1 Prupe.1G121700_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0416301 RchiOBHm_Chr4g0424661
rosa_laevigata RLG00000007388 RLG00000007432 RLG00000007434 RLG00000007435 RLG00000007439 RLG00000007441 RLG00000007442 RLG00000007458 RLG00000007465 RLG00000007997 RLG00000008015 RLG00000008016 RLG00000008017 RLG00000035315
rosa_multiflora Rmu_co8150926.1_g000001 Rmu_co8225682.1_g000001 Rmu_co8296077.1_g000001 Rmu_sc0004841.1_g000022 Rmu_sc0006553.1_g000008 Rmu_sc0008889.1_g000002
rosa_roxburghii Rroxscaffold_1G00030220 Rroxscaffold_2G00114820 Rroxscaffold_3G00219510 Rroxscaffold_3G00255600 Rroxscaffold_4G00304060 Rroxscaffold_4G00330360 Rroxscaffold_4G00330400 Rroxscaffold_5G00359920 Rroxscaffold_5G00359930 Rroxscaffold_5G00359960 Rroxscaffold_5G00366600 Rroxscaffold_5G00366630 Rroxscaffold_5G00366640 Rroxscaffold_5G00366710 Rroxscaffold_5G00366970
rosa_rugosa Rorug04G0138400 Rorug04G0138500 Rorug04G0138700 Rorug04G0140600 Rorug04G0199000 Rorug07G0061600
rosa_samantha Rh4AG255800 Rh4AG255900 Rh4AG256000 Rh4AG256200 Rh4BG261200 Rh4BG261300 Rh4BG261600 Rh4CG212100 Rh4CG212800 Rh4CG212900 Rh4CG272300 Rh4CG272500 Rh4CG272600 Rh4CG272800 Rh4CG275800 Rh4DG255800 Rh4DG255900 Rh4DG256200 Rh4DG257200 Rh4DG257300 Rh7BG190600 Rh7CG198100
rosa_wichuraiana Rw1G001980 Rw4G022090 Rw4G024000 Rw4G024010 Rw7G016430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 372
AccIII TCCGGA 1 cut(s) 96
AciI CCGC 2 cut(s) 8, 391
AclWI GGATC 3 cut(s) 92, 107, 143
AcsI RAATTY 2 cut(s) 212, 246
AfiI CCNNNNNNNGG 1 cut(s) 14
AgsI TTSAA 4 cut(s) 115, 225, 342, 437
AjnI CCWGG 1 cut(s) 12
AluBI AGCT 1 cut(s) 326
AluI AGCT 1 cut(s) 326
Alw26I GTCTC 1 cut(s) 46
AlwI GGATC 3 cut(s) 92, 107, 143
Aor13HI TCCGGA 1 cut(s) 96
ApoI RAATTY 2 cut(s) 212, 246
Asp700I GAANNNNTTC 1 cut(s) 23
AspS9I GGNCC 2 cut(s) 308, 384
AsuHPI GGTGA 4 cut(s) 61, 73, 158, 262
AvaII GGWCC 2 cut(s) 308, 384
BanII GRGCYC 1 cut(s) 421
BceAI ACGGC 1 cut(s) 247
BciT130I CCWGG 1 cut(s) 14
BclI TGATCA 1 cut(s) 73
BcoDI GTCTC 1 cut(s) 46
BfuAI ACCTGC 1 cut(s) 372
BisI GCNGC 1 cut(s) 391
BlsI GCNGC 1 cut(s) 392
Bme1390I CCNGG 1 cut(s) 14
Bme18I GGWCC 2 cut(s) 308, 384
BmgT120I GGNCC 2 cut(s) 308, 384
BmrFI CCNGG 1 cut(s) 14
BpmI CTGGAG 1 cut(s) 348
BsaJI CCNNGG 2 cut(s) 12, 13
BsaWI WCCGGW 1 cut(s) 96
Bsc4I CCNNNNNNNGG 1 cut(s) 14
BseAI TCCGGA 1 cut(s) 96
BseBI CCWGG 1 cut(s) 14
BseDI CCNNGG 2 cut(s) 12, 13
BseGI GGATG 1 cut(s) 93
BseLI CCNNNNNNNGG 1 cut(s) 14
BsiSI CCGG 1 cut(s) 97
BslI CCNNNNNNNGG 1 cut(s) 14
BsmAI GTCTC 1 cut(s) 46
Bsp1286I GDGCHC 1 cut(s) 421
Bsp13I TCCGGA 1 cut(s) 96
Bsp143I GATC 5 cut(s) 73, 84, 99, 148, 160
BspACI CCGC 2 cut(s) 8, 391
BspEI TCCGGA 1 cut(s) 96
BspMI ACCTGC 1 cut(s) 372
BspPI GGATC 3 cut(s) 92, 107, 143
BssECI CCNNGG 2 cut(s) 12, 13
BssMI GATC 5 cut(s) 73, 84, 99, 148, 160
Bst2UI CCWGG 1 cut(s) 14
Bst4CI ACNGT 8 cut(s) 49, 57, 178, 184, 190, 265, 312, 359
Bst6I CTCTTC 1 cut(s) 14
BstC8I GCNNGC 1 cut(s) 289
BstF5I GGATG 1 cut(s) 93
BstKTI GATC 5 cut(s) 76, 87, 102, 151, 163
BstMAI GTCTC 1 cut(s) 46
BstMBI GATC 5 cut(s) 73, 84, 99, 148, 160
BstMWI GCNNNNNNNGC 2 cut(s) 387, 416
BstNI CCWGG 1 cut(s) 14
BstSCI CCNGG 1 cut(s) 12
BtsCI GGATG 1 cut(s) 93
BveI ACCTGC 1 cut(s) 372
Cac8I GCNNGC 1 cut(s) 289
Cfr13I GGNCC 2 cut(s) 308, 384
CviAII CATG 2 cut(s) 143, 377
CviJI RGCY 5 cut(s) 234, 326, 390, 419, 430
CviKI_1 RGCY 5 cut(s) 234, 326, 390, 419, 430
DpnI GATC 5 cut(s) 75, 86, 101, 150, 162
DpnII GATC 5 cut(s) 73, 84, 99, 148, 160
Eam1104I CTCTTC 1 cut(s) 14
EarI CTCTTC 1 cut(s) 14
Eco24I GRGCYC 1 cut(s) 421
Eco47I GGWCC 2 cut(s) 308, 384
EcoRII CCWGG 1 cut(s) 12
EcoT38I GRGCYC 1 cut(s) 421
FaeI CATG 2 cut(s) 146, 380
FaiI YATR 8 cut(s) 36, 67, 72, 108, 144, 240, 306, 378
FatI CATG 2 cut(s) 142, 376
FbaI TGATCA 1 cut(s) 73
Fnu4HI GCNGC 1 cut(s) 391
FokI GGATG 1 cut(s) 80
FriOI GRGCYC 1 cut(s) 421
Fsp4HI GCNGC 1 cut(s) 391
GluI GCNGC 1 cut(s) 391
GsuI CTGGAG 1 cut(s) 348
HapII CCGG 1 cut(s) 97
Hin1II CATG 2 cut(s) 146, 380
HincII GTYRAC 1 cut(s) 334
HindII GTYRAC 1 cut(s) 334
HinfI GANTC 2 cut(s) 122, 437
HpaI GTTAAC 1 cut(s) 334
HpaII CCGG 1 cut(s) 97
HphI GGTGA 4 cut(s) 61, 73, 158, 262
Hpy166II GTNNAC 1 cut(s) 334
Hpy188I TCNGA 1 cut(s) 136
Hpy188III TCNNGA 5 cut(s) 97, 152, 206, 434, 441
Hpy8I GTNNAC 1 cut(s) 334
HpyCH4III ACNGT 8 cut(s) 49, 57, 178, 184, 190, 265, 312, 359
HpyCH4V TGCA 2 cut(s) 229, 410
HpyF10VI GCNNNNNNNGC 2 cut(s) 387, 416
Hsp92II CATG 2 cut(s) 146, 380
Kpn2I TCCGGA 1 cut(s) 96
Ksp22I TGATCA 1 cut(s) 73
KspAI GTTAAC 1 cut(s) 334
Kzo9I GATC 5 cut(s) 73, 84, 99, 148, 160
LpnPI CCDG 7 cut(s) 26, 110, 219, 301, 312, 367, 400
MaeIII GTNAC 3 cut(s) 178, 184, 190
MalI GATC 5 cut(s) 75, 86, 101, 150, 162
MboI GATC 5 cut(s) 73, 84, 99, 148, 160
MboII GAAGA 1 cut(s) 31
MhlI GDGCHC 1 cut(s) 421
MluCI AATT 2 cut(s) 212, 246
MnlI CCTC 3 cut(s) 15, 283, 441
MroI TCCGGA 1 cut(s) 96
MroXI GAANNNNTTC 1 cut(s) 23
MseI TTAA 1 cut(s) 333
MspA1I CMGCKG 1 cut(s) 326
MspI CCGG 1 cut(s) 97
MspR9I CCNGG 1 cut(s) 14
MvaI CCWGG 1 cut(s) 14
MwoI GCNNNNNNNGC 2 cut(s) 387, 416
NdeII GATC 5 cut(s) 73, 84, 99, 148, 160
NlaIII CATG 2 cut(s) 146, 380
NmuCI GTSAC 3 cut(s) 178, 184, 190
PasI CCCWGGG 1 cut(s) 13
PdmI GAANNNNTTC 1 cut(s) 23
PfeI GAWTC 2 cut(s) 122, 437
PkrI GCNGC 1 cut(s) 392
Psp6I CCWGG 1 cut(s) 12
PspGI CCWGG 1 cut(s) 12
PspPI GGNCC 2 cut(s) 308, 384
PvuII CAGCTG 1 cut(s) 326
SaqAI TTAA 1 cut(s) 333
SatI GCNGC 1 cut(s) 391
Sau3AI GATC 5 cut(s) 73, 84, 99, 148, 160
Sau96I GGNCC 2 cut(s) 308, 384
ScrFI CCNGG 1 cut(s) 14
SduI GDGCHC 1 cut(s) 421
SetI ASST 3 cut(s) 275, 328, 386
SinI GGWCC 2 cut(s) 308, 384
Sse9I AATT 2 cut(s) 212, 246
SsiI CCGC 2 cut(s) 8, 391
StyD4I CCNGG 1 cut(s) 12
TaaI ACNGT 8 cut(s) 49, 57, 178, 184, 190, 265, 312, 359
TaqI TCGA 2 cut(s) 27, 102
TasI AATT 2 cut(s) 212, 246
TauI GCSGC 1 cut(s) 393
TfiI GAWTC 2 cut(s) 122, 437
Tru1I TTAA 1 cut(s) 333
Tru9I TTAA 1 cut(s) 333
TseFI GTSAC 3 cut(s) 178, 184, 190
Tsp45I GTSAC 3 cut(s) 178, 184, 190
TspDTI ATGAA 4 cut(s) 114, 225, 255, 365
TspGWI ACGGA 1 cut(s) 132
VpaK11BI GGWCC 2 cut(s) 308, 384
XapI RAATTY 2 cut(s) 212, 246
XmnI GAANNNNTTC 1 cut(s) 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.