RchiOBHm_Chr4g0424661

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000621
Physical Location & Seq
Reverse (-)
50246547 .. 50247441
895 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39391

Sequence Viewer

Length: 480 bp
ATGTCTCATCATGCTCATCTGATGAACCCAGGCGCCATGTTCGCCAATGGTTCAGATCCAAATCAGCCTTCGTACAATACCAACTATGGTGCTCAAGCTCCAGCTCCAGCTCCAGCTCATAATGGATATCCAGGTTATGCTCCGCCTCCTCCATCTTATGGATACTATAACCCTAACCATGCATTACAGGGCGGTTCTGCTCCGCCTGCTCAAGCCCCATATGGCTATTACCCTCCTCCTCCGGCTTATAACAATGGATACTATGACCCTCGATTCTATCAGGCGCCTGTTCGACGTCCCGCTAAGCCGAAGACTCCTGGTAAGCCCAAGGCTGAAAGGAGCGGTCCTAAGAACGTATCATACAAGGTTGCAAGGAATCGGATTAGTGGCAACACGGGGGACCATAATGGAGTTTTCAACGTTGGCAACAAGAATTCTGGTCGCCACATGGATGACGACGAGGAGGAAGATGAATACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jacalin

Protein Analysis

159

Amino Acids

17.27

Weight (kDa)

8.67

Isoelectric Point (pI)

55.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000621)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g32560 FvH4_3g35880 FvH4_4g19501 FvH4_4g19530 FvH4_4g19531 FvH4_4g19540 FvH4_4g19540
prunus_persica Prupe.1G121600_v2.0.a1 Prupe.1G121700_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0416301 RchiOBHm_Chr4g0424661
rosa_laevigata RLG00000007388 RLG00000007432 RLG00000007434 RLG00000007435 RLG00000007439 RLG00000007441 RLG00000007442 RLG00000007458 RLG00000007465 RLG00000007997 RLG00000008015 RLG00000008016 RLG00000008017 RLG00000035315
rosa_multiflora Rmu_co8150926.1_g000001 Rmu_co8225682.1_g000001 Rmu_co8296077.1_g000001 Rmu_sc0004841.1_g000022 Rmu_sc0006553.1_g000008 Rmu_sc0008889.1_g000002
rosa_roxburghii Rroxscaffold_1G00030220 Rroxscaffold_2G00114820 Rroxscaffold_3G00219510 Rroxscaffold_3G00255600 Rroxscaffold_4G00304060 Rroxscaffold_4G00330360 Rroxscaffold_4G00330400 Rroxscaffold_5G00359920 Rroxscaffold_5G00359930 Rroxscaffold_5G00359960 Rroxscaffold_5G00366600 Rroxscaffold_5G00366630 Rroxscaffold_5G00366640 Rroxscaffold_5G00366710 Rroxscaffold_5G00366970
rosa_rugosa Rorug04G0138400 Rorug04G0138500 Rorug04G0138700 Rorug04G0140600 Rorug04G0199000 Rorug07G0061600
rosa_samantha Rh4AG255800 Rh4AG255900 Rh4AG256000 Rh4AG256200 Rh4BG261200 Rh4BG261300 Rh4BG261600 Rh4CG212100 Rh4CG212800 Rh4CG212900 Rh4CG272300 Rh4CG272500 Rh4CG272600 Rh4CG272800 Rh4CG275800 Rh4DG255800 Rh4DG255900 Rh4DG256200 Rh4DG257200 Rh4DG257300 Rh7BG190600 Rh7CG198100
rosa_wichuraiana Rw1G001980 Rw4G022090 Rw4G024000 Rw4G024010 Rw7G016430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 249
AatII GACGTC 1 cut(s) 298
AccB1I GGYRCC 2 cut(s) 32, 283
AccB7I CCANNNNNTGG 1 cut(s) 158
AccBSI CCGCTC 1 cut(s) 342
AciI CCGC 5 cut(s) 143, 192, 203, 300, 342
AclI AACGTT 1 cut(s) 420
AclWI GGATC 1 cut(s) 50
AcsI RAATTY 1 cut(s) 433
AcyI GRCGYC 3 cut(s) 33, 284, 295
AfaI GTAC 1 cut(s) 74
AfiI CCNNNNNNNGG 1 cut(s) 158
AgsI TTSAA 1 cut(s) 418
AjnI CCWGG 3 cut(s) 28, 130, 316
AjuI GAANNNNNNNTTGG 2 cut(s) 52, 84
AluBI AGCT 4 cut(s) 98, 104, 110, 116
AluI AGCT 4 cut(s) 98, 104, 110, 116
Alw21I GWGCWC 1 cut(s) 94
Alw26I GTCTC 1 cut(s) 9
AlwI GGATC 1 cut(s) 50
ApoI RAATTY 1 cut(s) 433
AspLEI GCGC 2 cut(s) 35, 286
AspS9I GGNCC 2 cut(s) 344, 400
AvaII GGWCC 2 cut(s) 344, 400
BanI GGYRCC 2 cut(s) 32, 283
BbsI GAAGAC 1 cut(s) 317
Bbv12I GWGCWC 1 cut(s) 94
BccI CCATC 1 cut(s) 160
BciT130I CCWGG 3 cut(s) 30, 132, 318
BciVI GTATCC 2 cut(s) 155, 251
BcoDI GTCTC 1 cut(s) 9
BfoI RGCGCY 2 cut(s) 36, 287
BfuI GTATCC 2 cut(s) 155, 251
BlpI GCTNAGC 1 cut(s) 303
Bme1390I CCNGG 3 cut(s) 30, 132, 318
Bme18I GGWCC 2 cut(s) 344, 400
BmgT120I GGNCC 2 cut(s) 344, 400
BmiI GGNNCC 3 cut(s) 34, 285, 401
BmrFI CCNGG 3 cut(s) 30, 132, 318
BpiI GAAGAC 1 cut(s) 317
BpmI CTGGAG 3 cut(s) 84, 90, 96
Bpu1102I GCTNAGC 1 cut(s) 303
BpuEI CTTGAG 2 cut(s) 78, 195
BsaBI GATNNNNATC 1 cut(s) 60
BsaHI GRCGYC 3 cut(s) 33, 284, 295
BsaJI CCNNGG 2 cut(s) 28, 327
Bsc4I CCNNNNNNNGG 1 cut(s) 158
Bse8I GATNNNNATC 1 cut(s) 60
BseBI CCWGG 3 cut(s) 30, 132, 318
BseDI CCNNGG 2 cut(s) 28, 327
BseGI GGATG 1 cut(s) 457
BseJI GATNNNNATC 1 cut(s) 60
BseLI CCNNNNNNNGG 1 cut(s) 158
BseRI GAGGAG 4 cut(s) 138, 225, 228, 476
BshNI GGYRCC 2 cut(s) 32, 283
BsiHKAI GWGCWC 1 cut(s) 94
BsiSI CCGG 1 cut(s) 242
BslFI GGGAC 2 cut(s) 282, 413
BslI CCNNNNNNNGG 1 cut(s) 158
BsmAI GTCTC 1 cut(s) 9
BsmFI GGGAC 2 cut(s) 282, 413
Bsp1286I GDGCHC 1 cut(s) 94
Bsp143I GATC 1 cut(s) 55
Bsp1720I GCTNAGC 1 cut(s) 303
BspACI CCGC 5 cut(s) 143, 192, 203, 300, 342
BspLI GGNNCC 3 cut(s) 34, 285, 401
BspPI GGATC 1 cut(s) 50
BspT107I GGYRCC 2 cut(s) 32, 283
BsrBI CCGCTC 1 cut(s) 342
BssECI CCNNGG 2 cut(s) 28, 327
BssMI GATC 1 cut(s) 55
BssNI GRCGYC 3 cut(s) 33, 284, 295
BssT1I CCWWGG 1 cut(s) 327
Bst2UI CCWGG 3 cut(s) 30, 132, 318
BstACI GRCGYC 3 cut(s) 33, 284, 295
BstC8I GCNNGC 1 cut(s) 207
BstDEI CTNAG 2 cut(s) 303, 348
BstF5I GGATG 1 cut(s) 457
BstH2I RGCGCY 2 cut(s) 36, 287
BstHHI GCGC 2 cut(s) 35, 286
BstKTI GATC 1 cut(s) 58
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 1 cut(s) 55
BstMWI GCNNNNNNNGC 2 cut(s) 41, 206
BstNI CCWGG 3 cut(s) 30, 132, 318
BstSCI CCNGG 3 cut(s) 28, 130, 316
BstV2I GAAGAC 1 cut(s) 317
BstX2I RGATCY 1 cut(s) 55
BstYI RGATCY 1 cut(s) 55
BsuI GTATCC 2 cut(s) 155, 251
BtsCI GGATG 1 cut(s) 457
Cac8I GCNNGC 1 cut(s) 207
CfoI GCGC 2 cut(s) 35, 286
Cfr13I GGNCC 2 cut(s) 344, 400
Csp6I GTAC 1 cut(s) 73
CviAII CATG 4 cut(s) 11, 37, 179, 448
CviQI GTAC 1 cut(s) 73
DdeI CTNAG 2 cut(s) 303, 348
DinI GGCGCC 2 cut(s) 34, 285
DpnI GATC 1 cut(s) 57
DpnII GATC 1 cut(s) 55
EciI GGCGGA 2 cut(s) 132, 192
Eco130I CCWWGG 1 cut(s) 327
Eco32I GATATC 1 cut(s) 128
Eco47I GGWCC 2 cut(s) 344, 400
EcoRI GAATTC 1 cut(s) 433
EcoRII CCWGG 3 cut(s) 28, 130, 316
EcoRV GATATC 1 cut(s) 128
EcoT14I CCWWGG 1 cut(s) 327
EcoT22I ATGCAT 1 cut(s) 184
EgeI GGCGCC 2 cut(s) 34, 285
EheI GGCGCC 2 cut(s) 34, 285
ErhI CCWWGG 1 cut(s) 327
FaeI CATG 4 cut(s) 14, 40, 182, 451
FaqI GGGAC 2 cut(s) 282, 413
FatI CATG 4 cut(s) 10, 36, 178, 447
FauI CCCGC 1 cut(s) 307
FauNDI CATATG 1 cut(s) 220
FokI GGATG 1 cut(s) 464
GlaI GCGC 2 cut(s) 34, 285
GsuI CTGGAG 3 cut(s) 84, 90, 96
HaeII RGCGCY 2 cut(s) 36, 287
HapII CCGG 1 cut(s) 242
HhaI GCGC 2 cut(s) 35, 286
Hin1I GRCGYC 3 cut(s) 33, 284, 295
Hin1II CATG 4 cut(s) 14, 40, 182, 451
Hin6I GCGC 2 cut(s) 33, 284
HinP1I GCGC 2 cut(s) 33, 284
HinfI GANTC 3 cut(s) 273, 313, 376
HpaII CCGG 1 cut(s) 242
Hpy188I TCNGA 3 cut(s) 21, 55, 381
Hpy99I CGWCG 2 cut(s) 297, 461
HpyAV CCTTC 1 cut(s) 78
HpyCH4IV ACGT 3 cut(s) 295, 354, 420
HpyCH4V TGCA 2 cut(s) 182, 371
HpyF10VI GCNNNNNNNGC 2 cut(s) 41, 206
HpyF3I CTNAG 2 cut(s) 303, 348
HpySE526I ACGT 3 cut(s) 295, 354, 420
Hsp92I GRCGYC 3 cut(s) 33, 284, 295
Hsp92II CATG 4 cut(s) 14, 40, 182, 451
HspAI GCGC 2 cut(s) 33, 284
KasI GGCGCC 2 cut(s) 32, 283
Kzo9I GATC 1 cut(s) 55
LmnI GCTCC 6 cut(s) 103, 109, 115, 145, 205, 339
MaeII ACGT 3 cut(s) 295, 354, 420
MalI GATC 1 cut(s) 57
MbiI CCGCTC 1 cut(s) 342
MboI GATC 1 cut(s) 55
MboII GAAGA 2 cut(s) 322, 479
MflI RGATCY 1 cut(s) 55
MhlI GDGCHC 1 cut(s) 94
MluCI AATT 1 cut(s) 433
Mly113I GGCGCC 2 cut(s) 33, 284
MlyI GAGTC 1 cut(s) 307
MnlI CCTC 8 cut(s) 156, 159, 243, 246, 249, 279, 454, 457
Mph1103I ATGCAT 1 cut(s) 184
MslI CAYNNNNRTG 1 cut(s) 450
MspI CCGG 1 cut(s) 242
MspR9I CCNGG 3 cut(s) 30, 132, 318
MvaI CCWGG 3 cut(s) 30, 132, 318
MwoI GCNNNNNNNGC 2 cut(s) 41, 206
NarI GGCGCC 2 cut(s) 33, 284
NdeI CATATG 1 cut(s) 220
NdeII GATC 1 cut(s) 55
NlaIII CATG 4 cut(s) 14, 40, 182, 451
NlaIV GGNNCC 3 cut(s) 34, 285, 401
NsiI ATGCAT 1 cut(s) 184
PfeI GAWTC 2 cut(s) 273, 376
PflMI CCANNNNNTGG 1 cut(s) 158
PleI GAGTC 1 cut(s) 307
PluTI GGCGCC 2 cut(s) 36, 287
PpsI GAGTC 1 cut(s) 307
PsiI TTATAA 1 cut(s) 249
Psp1406I AACGTT 1 cut(s) 420
Psp6I CCWGG 3 cut(s) 28, 130, 316
PspGI CCWGG 3 cut(s) 28, 130, 316
PspN4I GGNNCC 3 cut(s) 34, 285, 401
PspPI GGNCC 2 cut(s) 344, 400
PsrI GAACNNNNNNTAC 2 cut(s) 344, 376
PsuI RGATCY 1 cut(s) 55
RsaI GTAC 1 cut(s) 74
RsaNI GTAC 1 cut(s) 73
RseI CAYNNNNRTG 1 cut(s) 450
Sau3AI GATC 1 cut(s) 55
Sau96I GGNCC 2 cut(s) 344, 400
SchI GAGTC 1 cut(s) 307
ScrFI CCNGG 3 cut(s) 30, 132, 318
SduI GDGCHC 1 cut(s) 94
SetI ASST 9 cut(s) 100, 106, 112, 118, 136, 298, 357, 369, 423
SfoI GGCGCC 2 cut(s) 34, 285
SinI GGWCC 2 cut(s) 344, 400
SmiMI CAYNNNNRTG 1 cut(s) 450
SmlI CTYRAG 2 cut(s) 93, 210
SmoI CTYRAG 2 cut(s) 93, 210
Sse9I AATT 1 cut(s) 433
SsiI CCGC 5 cut(s) 143, 192, 203, 300, 342
SspDI GGCGCC 2 cut(s) 32, 283
StyD4I CCNGG 3 cut(s) 28, 130, 316
StyI CCWWGG 1 cut(s) 327
TaiI ACGT 3 cut(s) 298, 357, 423
TaqI TCGA 2 cut(s) 271, 292
TasI AATT 1 cut(s) 433
TfiI GAWTC 2 cut(s) 273, 376
TspDTI ATGAA 1 cut(s) 38
Van91I CCANNNNNTGG 1 cut(s) 158
VpaK11BI GGWCC 2 cut(s) 344, 400
XapI RAATTY 1 cut(s) 433
ZraI GACGTC 1 cut(s) 296
Zsp2I ATGCAT 1 cut(s) 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.