Rh4CG212100

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0000621
Physical Location & Seq
Reverse (-)
44180735 .. 44182846
2112 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG212100.1

Sequence Viewer

Length: 492 bp
ATGGTTAGCGGACAATTGTACGTTGGGATTGAATATGATGACAATGGGAGCTCATTTTGGTCGGACCGACATGGGTTCAGCCTGCTTTCTAGCAAAACAGACACGATCAAGCTTGATTATCCGGACGAATTTTTGACTTCAGTTCATGGACATTATGATAAGCTGTGGTACTTGCCGACCAATGTTTGCTCCCTTACTTTCAAGAGCAACAAAAAGAGTTATGGACCATATGGAAAGGAAGTAGGAAGATTGTTTTCAATTCAAGTGCCTGGGAGTAAGATTGTTGGCTTTCATGGCAGGTCTTCCATTTATATGGAAATTCGGGCAATAGGTGCTCACCTAAAGCCTCTTGATCATCACGAGAATGAAAAGTACCTCCAGTCAAAACCTCTCGAGCTTAAAGACTTTTCAGTGGTGCCGGTGGTACAAAATGTGTCGACGCCTCTACTTCTAGATGGATATCCTTCTCAGACCATGCTGATCAAGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jacalin

Protein Analysis

163

Amino Acids

18.45

Weight (kDa)

6.65

Isoelectric Point (pI)

28.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Jacalin PF01419 7 - 113 1.5e-26 Jacalin-like lectin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000621)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g32560 FvH4_3g35880 FvH4_4g19501 FvH4_4g19530 FvH4_4g19531 FvH4_4g19540 FvH4_4g19540
prunus_persica Prupe.1G121600_v2.0.a1 Prupe.1G121700_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0416301 RchiOBHm_Chr4g0424661
rosa_laevigata RLG00000007388 RLG00000007432 RLG00000007434 RLG00000007435 RLG00000007439 RLG00000007441 RLG00000007442 RLG00000007458 RLG00000007465 RLG00000007997 RLG00000008015 RLG00000008016 RLG00000008017 RLG00000035315
rosa_multiflora Rmu_co8150926.1_g000001 Rmu_co8225682.1_g000001 Rmu_co8296077.1_g000001 Rmu_sc0004841.1_g000022 Rmu_sc0006553.1_g000008 Rmu_sc0008889.1_g000002
rosa_roxburghii Rroxscaffold_1G00030220 Rroxscaffold_2G00114820 Rroxscaffold_3G00219510 Rroxscaffold_3G00255600 Rroxscaffold_4G00304060 Rroxscaffold_4G00330360 Rroxscaffold_4G00330400 Rroxscaffold_5G00359920 Rroxscaffold_5G00359930 Rroxscaffold_5G00359960 Rroxscaffold_5G00366600 Rroxscaffold_5G00366630 Rroxscaffold_5G00366640 Rroxscaffold_5G00366710 Rroxscaffold_5G00366970
rosa_rugosa Rorug04G0138400 Rorug04G0138500 Rorug04G0138700 Rorug04G0140600 Rorug04G0199000 Rorug07G0061600
rosa_samantha Rh4AG255800 Rh4AG255900 Rh4AG256000 Rh4AG256200 Rh4BG261200 Rh4BG261300 Rh4BG261600 Rh4CG212100 Rh4CG212800 Rh4CG212900 Rh4CG272300 Rh4CG272500 Rh4CG272600 Rh4CG272800 Rh4CG275800 Rh4DG255800 Rh4DG255900 Rh4DG256200 Rh4DG257200 Rh4DG257300 Rh7BG190600 Rh7CG198100
rosa_wichuraiana Rw1G001980 Rw4G022090 Rw4G024000 Rw4G024010 Rw7G016430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 288
AccB1I GGYRCC 1 cut(s) 415
AccI GTMKAC 1 cut(s) 437
AccIII TCCGGA 1 cut(s) 121
AciI CCGC 1 cut(s) 9
AcsI RAATTY 2 cut(s) 128, 318
AcuI CTGAAG 1 cut(s) 123
AcyI GRCGYC 1 cut(s) 440
AfaI GTAC 4 cut(s) 20, 170, 374, 426
AgsI TTSAA 4 cut(s) 32, 202, 258, 263
AjnI CCWGG 1 cut(s) 268
AluBI AGCT 4 cut(s) 51, 112, 163, 397
AluI AGCT 4 cut(s) 51, 112, 163, 397
Alw21I GWGCWC 2 cut(s) 53, 337
Ama87I CYCGRG 1 cut(s) 392
Aor13HI TCCGGA 1 cut(s) 121
ApoI RAATTY 2 cut(s) 128, 318
AspS9I GGNCC 2 cut(s) 64, 224
AsuHPI GGTGA 1 cut(s) 329
AvaI CYCGRG 1 cut(s) 392
AvaII GGWCC 2 cut(s) 64, 224
BanI GGYRCC 1 cut(s) 415
BanII GRGCYC 1 cut(s) 53
BauI CACGAG 1 cut(s) 359
BbsI GAAGAC 1 cut(s) 294
Bbv12I GWGCWC 2 cut(s) 53, 337
BccI CCATC 1 cut(s) 449
BciT130I CCWGG 1 cut(s) 270
BclI TGATCA 2 cut(s) 352, 480
BfaI CTAG 2 cut(s) 90, 452
BfuAI ACCTGC 1 cut(s) 288
Bme1390I CCNGG 1 cut(s) 270
Bme18I GGWCC 2 cut(s) 64, 224
BmeT110I CYCGRG 1 cut(s) 392
BmgT120I GGNCC 2 cut(s) 64, 224
BmiI GGNNCC 1 cut(s) 417
BmrFI CCNGG 1 cut(s) 270
BpiI GAAGAC 1 cut(s) 294
BpmI CTGGAG 1 cut(s) 362
BsaBI GATNNNNATC 1 cut(s) 459
BsaHI GRCGYC 1 cut(s) 440
BsaJI CCNNGG 1 cut(s) 269
BsaWI WCCGGW 1 cut(s) 121
Bse118I RCCGGY 1 cut(s) 418
Bse1I ACTGG 1 cut(s) 379
Bse8I GATNNNNATC 1 cut(s) 459
BseAI TCCGGA 1 cut(s) 121
BseBI CCWGG 1 cut(s) 270
BseDI CCNNGG 1 cut(s) 269
BseJI GATNNNNATC 1 cut(s) 459
BseMII CTCAG 1 cut(s) 482
BseNI ACTGG 1 cut(s) 379
BshNI GGYRCC 1 cut(s) 415
BsiHKAI GWGCWC 2 cut(s) 53, 337
BsiHKCI CYCGRG 1 cut(s) 392
BsiSI CCGG 2 cut(s) 122, 419
BsoBI CYCGRG 1 cut(s) 392
Bsp1286I GDGCHC 2 cut(s) 53, 337
Bsp13I TCCGGA 1 cut(s) 121
Bsp143I GATC 3 cut(s) 105, 352, 480
BspACI CCGC 1 cut(s) 9
BspCNI CTCAG 1 cut(s) 481
BspEI TCCGGA 1 cut(s) 121
BspLI GGNNCC 1 cut(s) 417
BspMI ACCTGC 1 cut(s) 288
BspT107I GGYRCC 1 cut(s) 415
BsrFI RCCGGY 1 cut(s) 418
BsrI ACTGG 1 cut(s) 379
BssAI RCCGGY 1 cut(s) 418
BssECI CCNNGG 1 cut(s) 269
BssMI GATC 3 cut(s) 105, 352, 480
BssNI GRCGYC 1 cut(s) 440
BssSI CACGAG 1 cut(s) 359
Bst2BI CACGAG 1 cut(s) 359
Bst2UI CCWGG 1 cut(s) 270
BstACI GRCGYC 1 cut(s) 440
BstAPI GCANNNNNTGC 1 cut(s) 332
BstC8I GCNNGC 1 cut(s) 83
BstDEI CTNAG 1 cut(s) 468
BstKTI GATC 3 cut(s) 108, 355, 483
BstMBI GATC 3 cut(s) 105, 352, 480
BstMWI GCNNNNNNNGC 2 cut(s) 294, 332
BstNI CCWGG 1 cut(s) 270
BstSCI CCNGG 1 cut(s) 268
BstV2I GAAGAC 1 cut(s) 294
BstXI CCANNNNNNTGG 1 cut(s) 313
BtsIMutI CAGTG 1 cut(s) 417
BveI ACCTGC 1 cut(s) 288
Cac8I GCNNGC 1 cut(s) 83
Cfr10I RCCGGY 1 cut(s) 418
Cfr13I GGNCC 2 cut(s) 64, 224
CpoI CGGWCCG 1 cut(s) 64
CseI GACGC 1 cut(s) 448
Csp6I GTAC 4 cut(s) 19, 169, 373, 425
CspI CGGWCCG 1 cut(s) 64
CviAII CATG 4 cut(s) 71, 146, 293, 475
CviJI RGCY 7 cut(s) 51, 81, 112, 163, 288, 346, 397
CviKI_1 RGCY 7 cut(s) 51, 81, 112, 163, 288, 346, 397
CviQI GTAC 4 cut(s) 19, 169, 373, 425
DdeI CTNAG 1 cut(s) 468
DpnI GATC 3 cut(s) 107, 354, 482
DpnII GATC 3 cut(s) 105, 352, 480
Ecl136II GAGCTC 1 cut(s) 51
Eco24I GRGCYC 1 cut(s) 53
Eco32I GATATC 1 cut(s) 461
Eco47I GGWCC 2 cut(s) 64, 224
Eco53kI GAGCTC 1 cut(s) 51
Eco57I CTGAAG 1 cut(s) 123
Eco88I CYCGRG 1 cut(s) 392
EcoICRI GAGCTC 1 cut(s) 51
EcoRII CCWGG 1 cut(s) 268
EcoRV GATATC 1 cut(s) 461
EcoT38I GRGCYC 1 cut(s) 53
FaeI CATG 4 cut(s) 74, 149, 296, 478
FatI CATG 4 cut(s) 70, 145, 292, 474
FauNDI CATATG 1 cut(s) 229
FbaI TGATCA 2 cut(s) 352, 480
FblI GTMKAC 1 cut(s) 437
FriOI GRGCYC 1 cut(s) 53
FspBI CTAG 2 cut(s) 90, 452
GsuI CTGGAG 1 cut(s) 362
HapII CCGG 2 cut(s) 122, 419
HgaI GACGC 1 cut(s) 448
Hin1I GRCGYC 1 cut(s) 440
Hin1II CATG 4 cut(s) 74, 149, 296, 478
HincII GTYRAC 1 cut(s) 438
HindII GTYRAC 1 cut(s) 438
HindIII AAGCTT 1 cut(s) 110
HpaII CCGG 2 cut(s) 122, 419
HphI GGTGA 1 cut(s) 329
Hpy166II GTNNAC 1 cut(s) 438
Hpy188I TCNGA 2 cut(s) 64, 471
Hpy188III TCNNGA 6 cut(s) 122, 202, 350, 359, 392, 452
Hpy8I GTNNAC 1 cut(s) 438
Hpy99I CGWCG 1 cut(s) 442
HpyAV CCTTC 1 cut(s) 474
HpyCH4IV ACGT 1 cut(s) 21
HpyF10VI GCNNNNNNNGC 2 cut(s) 294, 332
HpyF3I CTNAG 1 cut(s) 468
HpySE526I ACGT 1 cut(s) 21
Hsp92I GRCGYC 1 cut(s) 440
Hsp92II CATG 4 cut(s) 74, 149, 296, 478
Kpn2I TCCGGA 1 cut(s) 121
Ksp22I TGATCA 2 cut(s) 352, 480
Kzo9I GATC 3 cut(s) 105, 352, 480
LmnI GCTCC 2 cut(s) 48, 194
LpnPI CCDG 7 cut(s) 95, 135, 255, 282, 283, 392, 432
MaeI CTAG 2 cut(s) 90, 452
MaeII ACGT 1 cut(s) 21
MalI GATC 3 cut(s) 107, 354, 482
MboI GATC 3 cut(s) 105, 352, 480
MboII GAAGA 2 cut(s) 258, 294
MfeI CAATTG 1 cut(s) 14
MhlI GDGCHC 2 cut(s) 53, 337
MluCI AATT 4 cut(s) 14, 128, 258, 318
MmeI TCCRAC 1 cut(s) 42
MnlI CCTC 4 cut(s) 357, 386, 399, 453
MroI TCCGGA 1 cut(s) 121
MseI TTAA 1 cut(s) 399
MslI CAYNNNNRTG 2 cut(s) 311, 363
MspI CCGG 2 cut(s) 122, 419
MspR9I CCNGG 1 cut(s) 270
MunI CAATTG 1 cut(s) 14
MvaI CCWGG 1 cut(s) 270
MwoI GCNNNNNNNGC 2 cut(s) 294, 332
NdeI CATATG 1 cut(s) 229
NdeII GATC 3 cut(s) 105, 352, 480
NlaIII CATG 4 cut(s) 74, 149, 296, 478
NlaIV GGNNCC 1 cut(s) 417
PaeR7I CTCGAG 1 cut(s) 392
Psp124BI GAGCTC 1 cut(s) 53
Psp6I CCWGG 1 cut(s) 268
PspGI CCWGG 1 cut(s) 268
PspN4I GGNNCC 1 cut(s) 417
PspPI GGNCC 2 cut(s) 64, 224
RsaI GTAC 4 cut(s) 20, 170, 374, 426
RsaNI GTAC 4 cut(s) 19, 169, 373, 425
RseI CAYNNNNRTG 2 cut(s) 311, 363
Rsr2I CGGWCCG 1 cut(s) 64
RsrII CGGWCCG 1 cut(s) 64
SacI GAGCTC 1 cut(s) 53
SalI GTCGAC 1 cut(s) 436
SaqAI TTAA 1 cut(s) 399
Sau3AI GATC 3 cut(s) 105, 352, 480
Sau96I GGNCC 2 cut(s) 64, 224
ScrFI CCNGG 1 cut(s) 270
SduI GDGCHC 2 cut(s) 53, 337
Sfr274I CTCGAG 1 cut(s) 392
SinI GGWCC 2 cut(s) 64, 224
SlaI CTCGAG 1 cut(s) 392
SmiMI CAYNNNNRTG 2 cut(s) 311, 363
SmlI CTYRAG 1 cut(s) 392
SmoI CTYRAG 1 cut(s) 392
Sse9I AATT 4 cut(s) 14, 128, 258, 318
SsiI CCGC 1 cut(s) 9
SspMI CTAG 2 cut(s) 90, 452
SstI GAGCTC 1 cut(s) 53
StyD4I CCNGG 1 cut(s) 268
TaiI ACGT 1 cut(s) 24
TaqI TCGA 2 cut(s) 393, 437
TaqII GACCGA 1 cut(s) 81
TasI AATT 4 cut(s) 14, 128, 258, 318
Tru1I TTAA 1 cut(s) 399
Tru9I TTAA 1 cut(s) 399
TscAI CASTG 1 cut(s) 417
TspDTI ATGAA 3 cut(s) 134, 281, 381
TspRI CASTG 1 cut(s) 417
VpaK11BI GGWCC 2 cut(s) 64, 224
XapI RAATTY 2 cut(s) 128, 318
XbaI TCTAGA 1 cut(s) 451
XhoI CTCGAG 1 cut(s) 392
XmiI GTMKAC 1 cut(s) 437
XspI CTAG 2 cut(s) 90, 452
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.