Rmu_sc0006553.1_g000008

Jacalin-like lectin domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006553.1
OG0000621
Physical Location & Seq
Forward (+)
69072 .. 69643
572 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006553.1_g000008.1.cds

Sequence Viewer

Length: 495 bp
atgtgggatgacggagtttactcaacggtaaggcaattagtgatagctcatggctctgggattgactccatccagattgagtatgatagcaaagggtgctcattttggtcagacaagcatggtggaaatggaggctggaaaacagacaaggtgaagcttgattatccagaggaatttttgacttcaattcatgggtattatggcaagataagtgaatgggggacagtctcagtccgatcgcttactttcaagagcaacaaaagatcttatggaccttttggaattgaacaaggaaactatttttcacttccagtgacaactggtaacaaaattgttgggtttcatgggaggtctggctggtatcttgatgcaataggagcttacctcaagccgattcagaatgatcaaaaccactacaacgtagttatggctcacacacagtacagttatatgactggtggcgctgacatccctgctggctactcactactctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jacalin

Protein Analysis

164

Amino Acids

18.27

Weight (kDa)

6.57

Isoelectric Point (pI)

32.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000621)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g32560 FvH4_3g35880 FvH4_4g19501 FvH4_4g19530 FvH4_4g19531 FvH4_4g19540 FvH4_4g19540
prunus_persica Prupe.1G121600_v2.0.a1 Prupe.1G121700_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0416301 RchiOBHm_Chr4g0424661
rosa_laevigata RLG00000007388 RLG00000007432 RLG00000007434 RLG00000007435 RLG00000007439 RLG00000007441 RLG00000007442 RLG00000007458 RLG00000007465 RLG00000007997 RLG00000008015 RLG00000008016 RLG00000008017 RLG00000035315
rosa_multiflora Rmu_co8150926.1_g000001 Rmu_co8225682.1_g000001 Rmu_co8296077.1_g000001 Rmu_sc0004841.1_g000022 Rmu_sc0006553.1_g000008 Rmu_sc0008889.1_g000002
rosa_roxburghii Rroxscaffold_1G00030220 Rroxscaffold_2G00114820 Rroxscaffold_3G00219510 Rroxscaffold_3G00255600 Rroxscaffold_4G00304060 Rroxscaffold_4G00330360 Rroxscaffold_4G00330400 Rroxscaffold_5G00359920 Rroxscaffold_5G00359930 Rroxscaffold_5G00359960 Rroxscaffold_5G00366600 Rroxscaffold_5G00366630 Rroxscaffold_5G00366640 Rroxscaffold_5G00366710 Rroxscaffold_5G00366970
rosa_rugosa Rorug04G0138400 Rorug04G0138500 Rorug04G0138700 Rorug04G0140600 Rorug04G0199000 Rorug07G0061600
rosa_samantha Rh4AG255800 Rh4AG255900 Rh4AG256000 Rh4AG256200 Rh4BG261200 Rh4BG261300 Rh4BG261600 Rh4CG212100 Rh4CG212800 Rh4CG212900 Rh4CG272300 Rh4CG272500 Rh4CG272600 Rh4CG272800 Rh4CG275800 Rh4DG255800 Rh4DG255900 Rh4DG256200 Rh4DG257200 Rh4DG257300 Rh7BG190600 Rh7CG198100
rosa_wichuraiana Rw1G001980 Rw4G022090 Rw4G024000 Rw4G024010 Rw7G016430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 173
AfaI GTAC 1 cut(s) 443
AgsI TTSAA 3 cut(s) 186, 250, 287
AluBI AGCT 3 cut(s) 47, 157, 380
AluI AGCT 3 cut(s) 47, 157, 380
Alw21I GWGCWC 1 cut(s) 101
Alw26I GTCTC 1 cut(s) 232
ApoI RAATTY 1 cut(s) 173
AspLEI GCGC 1 cut(s) 464
AspS9I GGNCC 1 cut(s) 272
AsuHPI GGTGA 1 cut(s) 163
AvaII GGWCC 1 cut(s) 272
Bbv12I GWGCWC 1 cut(s) 101
BccI CCATC 1 cut(s) 77
BclI TGATCA 1 cut(s) 403
BcoDI GTCTC 1 cut(s) 232
BfoI RGCGCY 1 cut(s) 465
BglII AGATCT 1 cut(s) 263
Bme18I GGWCC 1 cut(s) 272
BmgT120I GGNCC 1 cut(s) 272
BmsI GCATC 1 cut(s) 358
BplI GAGNNNNNCTC 2 cut(s) 369, 401
BpuEI CTTGAG 1 cut(s) 371
Bse1I ACTGG 3 cut(s) 311, 325, 460
BseGI GGATG 3 cut(s) 13, 69, 468
BseMII CTCAG 1 cut(s) 243
BseNI ACTGG 3 cut(s) 311, 325, 460
Bsh1285I CGRYCG 1 cut(s) 239
BsiEI CGRYCG 1 cut(s) 239
BsiHKAI GWGCWC 1 cut(s) 101
BslFI GGGAC 1 cut(s) 235
BsmAI GTCTC 1 cut(s) 232
BsmFI GGGAC 1 cut(s) 235
Bsp1286I GDGCHC 1 cut(s) 101
Bsp143I GATC 3 cut(s) 236, 263, 403
BspCNI CTCAG 1 cut(s) 242
BsrI ACTGG 3 cut(s) 311, 325, 460
BssMI GATC 3 cut(s) 236, 263, 403
Bst4CI ACNGT 4 cut(s) 28, 226, 441, 446
BstAPI GCANNNNNTGC 1 cut(s) 96
BstC8I GCNNGC 1 cut(s) 478
BstDEI CTNAG 1 cut(s) 229
BstF5I GGATG 3 cut(s) 13, 69, 468
BstH2I RGCGCY 1 cut(s) 465
BstHHI GCGC 1 cut(s) 464
BstKTI GATC 3 cut(s) 239, 266, 406
BstMAI GTCTC 1 cut(s) 232
BstMBI GATC 3 cut(s) 236, 263, 403
BstMCI CGRYCG 1 cut(s) 239
BstMWI GCNNNNNNNGC 2 cut(s) 96, 377
BstX2I RGATCY 1 cut(s) 263
BstYI RGATCY 1 cut(s) 263
BtsCI GGATG 3 cut(s) 13, 69, 468
BtsIMutI CAGTG 1 cut(s) 318
Cac8I GCNNGC 1 cut(s) 478
CfoI GCGC 1 cut(s) 464
Cfr13I GGNCC 1 cut(s) 272
Csp6I GTAC 1 cut(s) 442
CspCI CAANNNNNGTGG 2 cut(s) 103, 138
CviAII CATG 4 cut(s) 50, 119, 191, 344
CviJI RGCY 9 cut(s) 47, 54, 135, 157, 357, 380, 391, 431, 480
CviKI_1 RGCY 9 cut(s) 47, 54, 135, 157, 357, 380, 391, 431, 480
CviQI GTAC 1 cut(s) 442
DdeI CTNAG 1 cut(s) 229
DpnI GATC 3 cut(s) 238, 265, 405
DpnII GATC 3 cut(s) 236, 263, 403
Eco47I GGWCC 1 cut(s) 272
FaeI CATG 4 cut(s) 53, 122, 194, 347
FaqI GGGAC 1 cut(s) 235
FatI CATG 4 cut(s) 49, 118, 190, 343
FbaI TGATCA 1 cut(s) 403
FokI GGATG 3 cut(s) 20, 56, 455
GlaI GCGC 1 cut(s) 463
HaeII RGCGCY 1 cut(s) 465
HhaI GCGC 1 cut(s) 464
Hin1II CATG 4 cut(s) 53, 122, 194, 347
Hin6I GCGC 1 cut(s) 462
HinP1I GCGC 1 cut(s) 462
HindIII AAGCTT 1 cut(s) 155
HinfI GANTC 2 cut(s) 65, 394
HphI GGTGA 1 cut(s) 163
Hpy166II GTNNAC 1 cut(s) 19
Hpy188I TCNGA 3 cut(s) 112, 236, 399
Hpy188III TCNNGA 4 cut(s) 73, 167, 250, 365
Hpy8I GTNNAC 1 cut(s) 19
HpyCH4III ACNGT 4 cut(s) 28, 226, 441, 446
HpyCH4IV ACGT 1 cut(s) 420
HpyCH4V TGCA 1 cut(s) 371
HpyF10VI GCNNNNNNNGC 2 cut(s) 96, 377
HpyF3I CTNAG 1 cut(s) 229
HpySE526I ACGT 1 cut(s) 420
Hsp92II CATG 4 cut(s) 53, 122, 194, 347
HspAI GCGC 1 cut(s) 462
Ksp22I TGATCA 1 cut(s) 403
Kzo9I GATC 3 cut(s) 236, 263, 403
LmnI GCTCC 1 cut(s) 377
LweI GCATC 1 cut(s) 358
MaeII ACGT 1 cut(s) 420
MaeIII GTNAC 2 cut(s) 313, 323
MalI GATC 3 cut(s) 238, 265, 405
MboI GATC 3 cut(s) 236, 263, 403
MflI RGATCY 1 cut(s) 263
MhlI GDGCHC 1 cut(s) 101
MluCI AATT 5 cut(s) 35, 173, 186, 282, 330
MlyI GAGTC 1 cut(s) 59
MnlI CCTC 4 cut(s) 125, 163, 342, 395
MwoI GCNNNNNNNGC 2 cut(s) 96, 377
NdeII GATC 3 cut(s) 236, 263, 403
NlaIII CATG 4 cut(s) 53, 122, 194, 347
NmuCI GTSAC 1 cut(s) 313
PfeI GAWTC 1 cut(s) 394
Ple19I CGATCG 1 cut(s) 239
PleI GAGTC 1 cut(s) 59
PpsI GAGTC 1 cut(s) 59
PspPI GGNCC 1 cut(s) 272
PsuI RGATCY 1 cut(s) 263
PvuI CGATCG 1 cut(s) 239
RsaI GTAC 1 cut(s) 443
RsaNI GTAC 1 cut(s) 442
Sau3AI GATC 3 cut(s) 236, 263, 403
Sau96I GGNCC 1 cut(s) 272
SchI GAGTC 1 cut(s) 59
SduI GDGCHC 1 cut(s) 101
SetI ASST 8 cut(s) 49, 153, 159, 277, 353, 382, 387, 423
SfaNI GCATC 1 cut(s) 358
SinI GGWCC 1 cut(s) 272
SmlI CTYRAG 1 cut(s) 386
SmoI CTYRAG 1 cut(s) 386
Sse9I AATT 5 cut(s) 35, 173, 186, 282, 330
TaaI ACNGT 4 cut(s) 28, 226, 441, 446
TaiI ACGT 1 cut(s) 423
TasI AATT 5 cut(s) 35, 173, 186, 282, 330
TatI WGTACW 1 cut(s) 441
TfiI GAWTC 1 cut(s) 394
TscAI CASTG 1 cut(s) 318
TseFI GTSAC 1 cut(s) 313
Tsp45I GTSAC 1 cut(s) 313
TspDTI ATGAA 2 cut(s) 179, 332
TspGWI ACGGA 1 cut(s) 27
TspRI CASTG 1 cut(s) 318
VpaK11BI GGWCC 1 cut(s) 272
XapI RAATTY 1 cut(s) 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.