Rroxscaffold_1G00030220

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000621
Physical Location & Seq
Reverse (-)
39624201 .. 39630263
6063 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00030220.1

Sequence Viewer

Length: 174 bp
ATGTTGGCCACTGTGGCTTGGAAGAGTATGATGAAGAAAATCCAAGAAGTACCACTAAATGCAACCACCATTTTCACCTTGCTTGCATTTTTGAATGGATGGAATGAAGTGACTCATGTCCGTAAGAGATTTAATCTTCCGGATGGAAGAGAAGATAAGGAAGAGAAGGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

57

Amino Acids

6.66

Weight (kDa)

8.12

Isoelectric Point (pI)

30.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000621)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g32560 FvH4_3g35880 FvH4_4g19501 FvH4_4g19530 FvH4_4g19531 FvH4_4g19540 FvH4_4g19540
prunus_persica Prupe.1G121600_v2.0.a1 Prupe.1G121700_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0416301 RchiOBHm_Chr4g0424661
rosa_laevigata RLG00000007388 RLG00000007432 RLG00000007434 RLG00000007435 RLG00000007439 RLG00000007441 RLG00000007442 RLG00000007458 RLG00000007465 RLG00000007997 RLG00000008015 RLG00000008016 RLG00000008017 RLG00000035315
rosa_multiflora Rmu_co8150926.1_g000001 Rmu_co8225682.1_g000001 Rmu_co8296077.1_g000001 Rmu_sc0004841.1_g000022 Rmu_sc0006553.1_g000008 Rmu_sc0008889.1_g000002
rosa_roxburghii Rroxscaffold_1G00030220 Rroxscaffold_2G00114820 Rroxscaffold_3G00219510 Rroxscaffold_3G00255600 Rroxscaffold_4G00304060 Rroxscaffold_4G00330360 Rroxscaffold_4G00330400 Rroxscaffold_5G00359920 Rroxscaffold_5G00359930 Rroxscaffold_5G00359960 Rroxscaffold_5G00366600 Rroxscaffold_5G00366630 Rroxscaffold_5G00366640 Rroxscaffold_5G00366710 Rroxscaffold_5G00366970
rosa_rugosa Rorug04G0138400 Rorug04G0138500 Rorug04G0138700 Rorug04G0140600 Rorug04G0199000 Rorug07G0061600
rosa_samantha Rh4AG255800 Rh4AG255900 Rh4AG256000 Rh4AG256200 Rh4BG261200 Rh4BG261300 Rh4BG261600 Rh4CG212100 Rh4CG212800 Rh4CG212900 Rh4CG272300 Rh4CG272500 Rh4CG272600 Rh4CG272800 Rh4CG275800 Rh4DG255800 Rh4DG255900 Rh4DG256200 Rh4DG257200 Rh4DG257300 Rh7BG190600 Rh7CG198100
rosa_wichuraiana Rw1G001980 Rw4G022090 Rw4G024000 Rw4G024010 Rw7G016430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 139
AcoI YGGCCR 1 cut(s) 6
AfaI GTAC 1 cut(s) 51
AgsI TTSAA 1 cut(s) 94
Aor13HI TCCGGA 1 cut(s) 139
AoxI GGCC 1 cut(s) 6
AsuHPI GGTGA 1 cut(s) 67
BalI TGGCCA 1 cut(s) 8
BccI CCATC 2 cut(s) 93, 137
BglI GCCNNNNNGGC 1 cut(s) 14
BoxI GACNNNNGTC 1 cut(s) 116
BsaWI WCCGGW 1 cut(s) 139
BseAI TCCGGA 1 cut(s) 139
BseGI GGATG 2 cut(s) 104, 148
BshFI GGCC 1 cut(s) 8
BsiSI CCGG 1 cut(s) 140
BsnI GGCC 1 cut(s) 8
Bsp13I TCCGGA 1 cut(s) 139
BspANI GGCC 1 cut(s) 8
BspEI TCCGGA 1 cut(s) 139
Bst4CI ACNGT 1 cut(s) 13
Bst6I CTCTTC 3 cut(s) 17, 142, 156
BstC8I GCNNGC 1 cut(s) 84
BstF5I GGATG 2 cut(s) 104, 148
BstMWI GCNNNNNNNGC 1 cut(s) 14
BstPAI GACNNNNGTC 1 cut(s) 116
BsuRI GGCC 1 cut(s) 8
BtsCI GGATG 2 cut(s) 104, 148
BtsIMutI CAGTG 1 cut(s) 9
Cac8I GCNNGC 1 cut(s) 84
Csp6I GTAC 1 cut(s) 50
CviAII CATG 1 cut(s) 116
CviJI RGCY 2 cut(s) 8, 17
CviKI_1 RGCY 2 cut(s) 8, 17
CviQI GTAC 1 cut(s) 50
EaeI YGGCCR 1 cut(s) 6
Eam1104I CTCTTC 3 cut(s) 17, 142, 156
EarI CTCTTC 3 cut(s) 17, 142, 156
FaeI CATG 1 cut(s) 119
FaiI YATR 2 cut(s) 29, 117
FatI CATG 1 cut(s) 115
FokI GGATG 2 cut(s) 111, 155
HaeIII GGCC 1 cut(s) 8
HapII CCGG 1 cut(s) 140
Hin1II CATG 1 cut(s) 119
HinfI GANTC 1 cut(s) 112
HpaII CCGG 1 cut(s) 140
HphI GGTGA 1 cut(s) 67
Hpy188III TCNNGA 1 cut(s) 140
HpyAV CCTTC 1 cut(s) 160
HpyCH4III ACNGT 1 cut(s) 13
HpyCH4V TGCA 2 cut(s) 62, 86
HpyF10VI GCNNNNNNNGC 1 cut(s) 14
Hsp92II CATG 1 cut(s) 119
Kpn2I TCCGGA 1 cut(s) 139
LpnPI CCDG 1 cut(s) 153
MaeIII GTNAC 1 cut(s) 109
MboII GAAGA 6 cut(s) 34, 46, 128, 159, 164, 173
MlsI TGGCCA 1 cut(s) 8
MluNI TGGCCA 1 cut(s) 8
MlyI GAGTC 1 cut(s) 106
Mox20I TGGCCA 1 cut(s) 8
MroI TCCGGA 1 cut(s) 139
MscI TGGCCA 1 cut(s) 8
MseI TTAA 1 cut(s) 132
Msp20I TGGCCA 1 cut(s) 8
MspI CCGG 1 cut(s) 140
MwoI GCNNNNNNNGC 1 cut(s) 14
NlaIII CATG 1 cut(s) 119
NmuCI GTSAC 1 cut(s) 109
PleI GAGTC 1 cut(s) 106
PpsI GAGTC 1 cut(s) 106
PshAI GACNNNNGTC 1 cut(s) 116
RsaI GTAC 1 cut(s) 51
RsaNI GTAC 1 cut(s) 50
SaqAI TTAA 1 cut(s) 132
SchI GAGTC 1 cut(s) 106
SetI ASST 1 cut(s) 80
SgeI CNNG 6 cut(s) 30, 56, 91, 95, 128, 152
TaaI ACNGT 1 cut(s) 13
Tru1I TTAA 1 cut(s) 132
Tru9I TTAA 1 cut(s) 132
TscAI CASTG 1 cut(s) 16
TseFI GTSAC 1 cut(s) 109
Tsp45I GTSAC 1 cut(s) 109
TspDTI ATGAA 2 cut(s) 47, 120
TspGWI ACGGA 1 cut(s) 110
TspRI CASTG 1 cut(s) 16
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.