RLG00000007432

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000621
Physical Location & Seq
Forward (+)
16685539 .. 16686159
621 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007432

Sequence Viewer

Length: 498 bp
ATGTACGGACCATATGGAAATTGTGAAAACGAGGGAACAAAATATTTCAGAATCCAAGGCTCTGCAAGTAAGATCGTTGGGTTCCATGGCAGGTCTGATGAGTGGTTTGATCTTCGTGCTTTAGGAGCTTACCTTAAGCCTTTGAATAATCCTAACAAGCCACCACAGGCTGCTCCACCTGTTCCGACTCCATATCCATATGGTAACTATTACGTTCCTCCTCCCGGTCGTCCTCCGCCACATAATAATGGATACTATGACTATCAGATGTCACAGGCACCACCGCCGCGGCCGCCTGCTGCTTTTGGACGTCCTAGTAAGCCGAAAAGTGCTCCCAGTAAGCCCAAGGCTGCTAAAAATAATGGCCCTAAAAACGTATCTTACAGGGTTTTAGGCAATGAAGTCGGTGGAAACATAGGAGACCATAATGGAGTTTTCAACGTTGGCAACAAGAATACAAGTCGCCACATGGAAAATGATGATGAAGACGAAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jacalin

Protein Analysis

166

Amino Acids

18.13

Weight (kDa)

9.08

Isoelectric Point (pI)

46.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000621)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g32560 FvH4_3g35880 FvH4_4g19501 FvH4_4g19530 FvH4_4g19531 FvH4_4g19540 FvH4_4g19540
prunus_persica Prupe.1G121600_v2.0.a1 Prupe.1G121700_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0416301 RchiOBHm_Chr4g0424661
rosa_laevigata RLG00000007388 RLG00000007432 RLG00000007434 RLG00000007435 RLG00000007439 RLG00000007441 RLG00000007442 RLG00000007458 RLG00000007465 RLG00000007997 RLG00000008015 RLG00000008016 RLG00000008017 RLG00000035315
rosa_multiflora Rmu_co8150926.1_g000001 Rmu_co8225682.1_g000001 Rmu_co8296077.1_g000001 Rmu_sc0004841.1_g000022 Rmu_sc0006553.1_g000008 Rmu_sc0008889.1_g000002
rosa_roxburghii Rroxscaffold_1G00030220 Rroxscaffold_2G00114820 Rroxscaffold_3G00219510 Rroxscaffold_3G00255600 Rroxscaffold_4G00304060 Rroxscaffold_4G00330360 Rroxscaffold_4G00330400 Rroxscaffold_5G00359920 Rroxscaffold_5G00359930 Rroxscaffold_5G00359960 Rroxscaffold_5G00366600 Rroxscaffold_5G00366630 Rroxscaffold_5G00366640 Rroxscaffold_5G00366710 Rroxscaffold_5G00366970
rosa_rugosa Rorug04G0138400 Rorug04G0138500 Rorug04G0138700 Rorug04G0140600 Rorug04G0199000 Rorug07G0061600
rosa_samantha Rh4AG255800 Rh4AG255900 Rh4AG256000 Rh4AG256200 Rh4BG261200 Rh4BG261300 Rh4BG261600 Rh4CG212100 Rh4CG212800 Rh4CG212900 Rh4CG272300 Rh4CG272500 Rh4CG272600 Rh4CG272800 Rh4CG275800 Rh4DG255800 Rh4DG255900 Rh4DG256200 Rh4DG257200 Rh4DG257300 Rh7BG190600 Rh7CG198100
rosa_wichuraiana Rw1G001980 Rw4G022090 Rw4G024000 Rw4G024010 Rw7G016430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 313
Acc36I ACCTGC 1 cut(s) 81
AccB1I GGYRCC 1 cut(s) 277
AccII CGCG 1 cut(s) 289
AciI CCGC 5 cut(s) 236, 284, 287, 289, 293
AclI AACGTT 1 cut(s) 441
AcoI YGGCCR 1 cut(s) 290
AcyI GRCGYC 1 cut(s) 310
AfaI GTAC 1 cut(s) 5
AfiI CCNNNNNNNGG 1 cut(s) 224
AflII CTTAAG 1 cut(s) 134
AgsI TTSAA 2 cut(s) 145, 439
AluBI AGCT 1 cut(s) 128
AluI AGCT 1 cut(s) 128
Alw21I GWGCWC 1 cut(s) 334
Alw26I GTCTC 1 cut(s) 414
AoxI GGCC 2 cut(s) 290, 364
ApeKI GCWGC 3 cut(s) 170, 299, 350
AspS9I GGNCC 2 cut(s) 8, 365
AsuC2I CCSGG 1 cut(s) 225
AvaII GGWCC 1 cut(s) 8
BanI GGYRCC 1 cut(s) 277
BbsI GAAGAC 1 cut(s) 492
Bbv12I GWGCWC 1 cut(s) 334
BbvI GCAGC 3 cut(s) 157, 286, 337
BcgI CGANNNNNNTGC 2 cut(s) 385, 419
BciVI GTATCC 1 cut(s) 245
BcnI CCSGG 1 cut(s) 225
BcoDI GTCTC 1 cut(s) 414
BfaI CTAG 1 cut(s) 315
BfrI CTTAAG 1 cut(s) 134
BfuAI ACCTGC 1 cut(s) 81
BfuI GTATCC 1 cut(s) 245
BisI GCNGC 6 cut(s) 171, 287, 290, 293, 300, 351
BlsI GCNGC 6 cut(s) 172, 288, 291, 294, 301, 352
Bme1390I CCNGG 1 cut(s) 225
Bme18I GGWCC 1 cut(s) 8
BmgT120I GGNCC 2 cut(s) 8, 365
BmiI GGNNCC 2 cut(s) 83, 279
BmrFI CCNGG 1 cut(s) 225
BmrI ACTGGG 1 cut(s) 330
BmuI ACTGGG 1 cut(s) 330
BpiI GAAGAC 1 cut(s) 492
BpuMI CCSGG 1 cut(s) 225
BsaHI GRCGYC 1 cut(s) 310
BsaI GGTCTC 1 cut(s) 414
BsaJI CCNNGG 4 cut(s) 55, 85, 287, 345
Bsc4I CCNNNNNNNGG 1 cut(s) 224
Bse1I ACTGG 1 cut(s) 336
Bse3DI GCAATG 1 cut(s) 403
BseDI CCNNGG 4 cut(s) 55, 85, 287, 345
BseLI CCNNNNNNNGG 1 cut(s) 224
BseMI GCAATG 1 cut(s) 403
BseNI ACTGG 1 cut(s) 336
BseRI GAGGAG 1 cut(s) 210
BseX3I CGGCCG 1 cut(s) 290
BseXI GCAGC 3 cut(s) 157, 286, 337
Bsh1236I CGCG 1 cut(s) 289
Bsh1285I CGRYCG 2 cut(s) 229, 293
BshFI GGCC 2 cut(s) 292, 366
BshNI GGYRCC 1 cut(s) 277
BsiEI CGRYCG 2 cut(s) 229, 293
BsiHKAI GWGCWC 1 cut(s) 334
BsiSI CCGG 1 cut(s) 225
BslI CCNNNNNNNGG 1 cut(s) 224
BsmAI GTCTC 1 cut(s) 414
BsnI GGCC 2 cut(s) 292, 366
Bso31I GGTCTC 1 cut(s) 414
Bsp1286I GDGCHC 1 cut(s) 334
Bsp143I GATC 2 cut(s) 72, 109
Bsp19I CCATGG 1 cut(s) 85
BspACI CCGC 5 cut(s) 236, 284, 287, 289, 293
BspANI GGCC 2 cut(s) 292, 366
BspFNI CGCG 1 cut(s) 289
BspLI GGNNCC 2 cut(s) 83, 279
BspMI ACCTGC 1 cut(s) 81
BspT107I GGYRCC 1 cut(s) 277
BspTI CTTAAG 1 cut(s) 134
BspTNI GGTCTC 1 cut(s) 414
BsrDI GCAATG 1 cut(s) 403
BsrI ACTGG 1 cut(s) 336
BssECI CCNNGG 4 cut(s) 55, 85, 287, 345
BssMI GATC 2 cut(s) 72, 109
BssNI GRCGYC 1 cut(s) 310
BssT1I CCWWGG 3 cut(s) 55, 85, 345
BstACI GRCGYC 1 cut(s) 310
BstAFI CTTAAG 1 cut(s) 134
BstC8I GCNNGC 1 cut(s) 297
BstDSI CCRYGG 2 cut(s) 85, 287
BstFNI CGCG 1 cut(s) 289
BstKTI GATC 2 cut(s) 75, 112
BstMAI GTCTC 1 cut(s) 414
BstMBI GATC 2 cut(s) 72, 109
BstMCI CGRYCG 2 cut(s) 229, 293
BstMWI GCNNNNNNNGC 2 cut(s) 125, 292
BstSCI CCNGG 1 cut(s) 223
BstUI CGCG 1 cut(s) 289
BstV1I GCAGC 3 cut(s) 157, 286, 337
BstV2I GAAGAC 1 cut(s) 492
BstZI CGGCCG 1 cut(s) 290
BsuI GTATCC 1 cut(s) 245
BsuRI GGCC 2 cut(s) 292, 366
BtgI CCRYGG 2 cut(s) 85, 287
BveI ACCTGC 1 cut(s) 81
Cac8I GCNNGC 1 cut(s) 297
CciNI GCGGCCGC 1 cut(s) 290
Cfr13I GGNCC 2 cut(s) 8, 365
Cfr42I CCGCGG 1 cut(s) 290
Csp6I GTAC 1 cut(s) 4
CviAII CATG 2 cut(s) 86, 469
CviQI GTAC 1 cut(s) 4
DpnI GATC 2 cut(s) 74, 111
DpnII GATC 2 cut(s) 72, 109
EaeI YGGCCR 1 cut(s) 290
EagI CGGCCG 1 cut(s) 290
EciI GGCGGA 1 cut(s) 225
EclXI CGGCCG 1 cut(s) 290
Eco130I CCWWGG 3 cut(s) 55, 85, 345
Eco31I GGTCTC 1 cut(s) 414
Eco47I GGWCC 1 cut(s) 8
Eco52I CGGCCG 1 cut(s) 290
EcoT14I CCWWGG 3 cut(s) 55, 85, 345
ErhI CCWWGG 3 cut(s) 55, 85, 345
FaeI CATG 2 cut(s) 89, 472
FatI CATG 2 cut(s) 85, 468
FauNDI CATATG 2 cut(s) 13, 199
Fnu4HI GCNGC 6 cut(s) 171, 287, 290, 293, 300, 351
Fsp4HI GCNGC 6 cut(s) 171, 287, 290, 293, 300, 351
FspBI CTAG 1 cut(s) 315
GluI GCNGC 6 cut(s) 171, 287, 290, 293, 300, 351
HaeIII GGCC 2 cut(s) 292, 366
HapII CCGG 1 cut(s) 225
Hin1I GRCGYC 1 cut(s) 310
Hin1II CATG 2 cut(s) 89, 472
HinfI GANTC 2 cut(s) 51, 187
HpaII CCGG 1 cut(s) 225
Hpy188I TCNGA 4 cut(s) 50, 97, 186, 267
HpyCH4IV ACGT 4 cut(s) 213, 310, 375, 441
HpyCH4V TGCA 1 cut(s) 65
HpyF10VI GCNNNNNNNGC 2 cut(s) 125, 292
HpySE526I ACGT 4 cut(s) 213, 310, 375, 441
Hsp92I GRCGYC 1 cut(s) 310
Hsp92II CATG 2 cut(s) 89, 472
KspI CCGCGG 1 cut(s) 290
Kzo9I GATC 2 cut(s) 72, 109
LmnI GCTCC 3 cut(s) 125, 178, 337
LpnPI CCDG 8 cut(s) 76, 152, 192, 238, 260, 309, 349, 370
Lsp1109I GCAGC 3 cut(s) 157, 286, 337
MaeI CTAG 1 cut(s) 315
MaeII ACGT 4 cut(s) 213, 310, 375, 441
MaeIII GTNAC 2 cut(s) 203, 270
MalI GATC 2 cut(s) 74, 111
MboI GATC 2 cut(s) 72, 109
MboII GAAGA 2 cut(s) 104, 497
MhlI GDGCHC 1 cut(s) 334
MluCI AATT 1 cut(s) 19
MlyI GAGTC 1 cut(s) 181
MmeI TCCRAC 1 cut(s) 209
MnlI CCTC 4 cut(s) 25, 228, 231, 243
MseI TTAA 1 cut(s) 135
MslI CAYNNNNRTG 1 cut(s) 246
MspA1I CMGCKG 1 cut(s) 289
MspCI CTTAAG 1 cut(s) 134
MspI CCGG 1 cut(s) 225
MspR9I CCNGG 1 cut(s) 225
MvnI CGCG 1 cut(s) 289
MwoI GCNNNNNNNGC 2 cut(s) 125, 292
NciI CCSGG 1 cut(s) 225
NcoI CCATGG 1 cut(s) 85
NdeI CATATG 2 cut(s) 13, 199
NdeII GATC 2 cut(s) 72, 109
NlaIII CATG 2 cut(s) 89, 472
NlaIV GGNNCC 2 cut(s) 83, 279
NmuCI GTSAC 1 cut(s) 270
NotI GCGGCCGC 1 cut(s) 290
PfeI GAWTC 1 cut(s) 51
PkrI GCNGC 6 cut(s) 172, 288, 291, 294, 301, 352
PleI GAGTC 1 cut(s) 181
PpsI GAGTC 1 cut(s) 181
Psp1406I AACGTT 1 cut(s) 441
PspN4I GGNNCC 2 cut(s) 83, 279
PspPI GGNCC 2 cut(s) 8, 365
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
RseI CAYNNNNRTG 1 cut(s) 246
SacII CCGCGG 1 cut(s) 290
SaqAI TTAA 1 cut(s) 135
SatI GCNGC 6 cut(s) 171, 287, 290, 293, 300, 351
Sau3AI GATC 2 cut(s) 72, 109
Sau96I GGNCC 2 cut(s) 8, 365
SchI GAGTC 1 cut(s) 181
ScrFI CCNGG 1 cut(s) 225
SduI GDGCHC 1 cut(s) 334
SetI ASST 8 cut(s) 95, 130, 135, 181, 216, 313, 378, 444
Sfr303I CCGCGG 1 cut(s) 290
SgrBI CCGCGG 1 cut(s) 290
SinI GGWCC 1 cut(s) 8
SmiMI CAYNNNNRTG 1 cut(s) 246
SmlI CTYRAG 1 cut(s) 134
SmoI CTYRAG 1 cut(s) 134
Sse9I AATT 1 cut(s) 19
SsiI CCGC 5 cut(s) 236, 284, 287, 289, 293
SspI AATATT 1 cut(s) 44
SspMI CTAG 1 cut(s) 315
StyD4I CCNGG 1 cut(s) 223
StyI CCWWGG 3 cut(s) 55, 85, 345
TaiI ACGT 4 cut(s) 216, 313, 378, 444
TasI AATT 1 cut(s) 19
TauI GCSGC 3 cut(s) 289, 292, 295
TfiI GAWTC 1 cut(s) 51
Tru1I TTAA 1 cut(s) 135
Tru9I TTAA 1 cut(s) 135
TseFI GTSAC 1 cut(s) 270
TseI GCWGC 3 cut(s) 170, 299, 350
Tsp45I GTSAC 1 cut(s) 270
TspDTI ATGAA 2 cut(s) 414, 498
TspGWI ACGGA 1 cut(s) 21
Vha464I CTTAAG 1 cut(s) 134
VpaK11BI GGWCC 1 cut(s) 8
XspI CTAG 1 cut(s) 315
ZraI GACGTC 1 cut(s) 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.