Rorug04G0138400

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000621
Physical Location & Seq
Forward (+)
22612018 .. 22614330
2313 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0138400.1

Sequence Viewer

Length: 453 bp
ATGCTATGTGGGAATGATAGAACTACTGGTGAAGGAGTAGAAGACGTTGGAGATGCTGAAGAAACTATGGAATTTGAAGCAGAAGATGAAAGTGATGTGACTCCCAATTCACATGCCTCAACACATGCAACAACTTCAAATTGTGATCCACATCCTCCAAATAAGACAAAGAAAAAGGATCCACTAGCACAAGCAATTGGAGATGTGGCCAACACCTTGAAAGAATTTATGGCAGCTCAAGTGTCCCCACAACTCAAAGGAGAGGATGTACATGAAGTGGTTTCTAAAGTACCAAACCTCAGCAAATTACAAGTTTTCAAAGCTGTAAACATATTGGTGAGTGGTAACCCCGAAGAATTCTCTCTATTGAAGTCTATTAATGATGCTGAAAAGAATGAGTGGATAAGAATGCTTATATGGCAATCTGAAGGGCAATCAAGGAATAAAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jacalin

Protein Analysis

150

Amino Acids

16.49

Weight (kDa)

4.72

Isoelectric Point (pI)

36.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000621)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g32560 FvH4_3g35880 FvH4_4g19501 FvH4_4g19530 FvH4_4g19531 FvH4_4g19540 FvH4_4g19540
prunus_persica Prupe.1G121600_v2.0.a1 Prupe.1G121700_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0416301 RchiOBHm_Chr4g0424661
rosa_laevigata RLG00000007388 RLG00000007432 RLG00000007434 RLG00000007435 RLG00000007439 RLG00000007441 RLG00000007442 RLG00000007458 RLG00000007465 RLG00000007997 RLG00000008015 RLG00000008016 RLG00000008017 RLG00000035315
rosa_multiflora Rmu_co8150926.1_g000001 Rmu_co8225682.1_g000001 Rmu_co8296077.1_g000001 Rmu_sc0004841.1_g000022 Rmu_sc0006553.1_g000008 Rmu_sc0008889.1_g000002
rosa_roxburghii Rroxscaffold_1G00030220 Rroxscaffold_2G00114820 Rroxscaffold_3G00219510 Rroxscaffold_3G00255600 Rroxscaffold_4G00304060 Rroxscaffold_4G00330360 Rroxscaffold_4G00330400 Rroxscaffold_5G00359920 Rroxscaffold_5G00359930 Rroxscaffold_5G00359960 Rroxscaffold_5G00366600 Rroxscaffold_5G00366630 Rroxscaffold_5G00366640 Rroxscaffold_5G00366710 Rroxscaffold_5G00366970
rosa_rugosa Rorug04G0138400 Rorug04G0138500 Rorug04G0138700 Rorug04G0140600 Rorug04G0199000 Rorug07G0061600
rosa_samantha Rh4AG255800 Rh4AG255900 Rh4AG256000 Rh4AG256200 Rh4BG261200 Rh4BG261300 Rh4BG261600 Rh4CG212100 Rh4CG212800 Rh4CG212900 Rh4CG272300 Rh4CG272500 Rh4CG272600 Rh4CG272800 Rh4CG275800 Rh4DG255800 Rh4DG255900 Rh4DG256200 Rh4DG257200 Rh4DG257300 Rh7BG190600 Rh7CG198100
rosa_wichuraiana Rw1G001980 Rw4G022090 Rw4G024000 Rw4G024010 Rw7G016430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 140, 173, 186
AcoI YGGCCR 1 cut(s) 207
AcsI RAATTY 3 cut(s) 71, 224, 356
AcuI CTGAAG 2 cut(s) 78, 447
AfaI GTAC 2 cut(s) 270, 291
AgsI TTSAA 5 cut(s) 77, 138, 220, 319, 370
AluBI AGCT 2 cut(s) 236, 323
AluI AGCT 2 cut(s) 236, 323
AlwI GGATC 3 cut(s) 140, 173, 186
AoxI GGCC 1 cut(s) 207
ApeKI GCWGC 1 cut(s) 233
ApoI RAATTY 3 cut(s) 71, 224, 356
AseI ATTAAT 1 cut(s) 378
AsuHPI GGTGA 2 cut(s) 41, 349
BalI TGGCCA 1 cut(s) 209
BamHI GGATCC 1 cut(s) 178
BbsI GAAGAC 1 cut(s) 48
BbvCI CCTCAGC 1 cut(s) 299
BbvI GCAGC 1 cut(s) 245
BfaI CTAG 1 cut(s) 185
BisI GCNGC 1 cut(s) 234
BlsI GCNGC 1 cut(s) 235
BmiI GGNNCC 1 cut(s) 180
BmsI GCATC 2 cut(s) 43, 373
BpiI GAAGAC 1 cut(s) 48
Bpu10I CCTNAGC 1 cut(s) 299
BpuEI CTTGAG 1 cut(s) 222
BsaBI GATNNNNATC 1 cut(s) 150
BsaXI ACNNNNNCTCC 2 cut(s) 252, 282
Bse1I ACTGG 1 cut(s) 31
Bse8I GATNNNNATC 1 cut(s) 150
BseGI GGATG 2 cut(s) 151, 271
BseJI GATNNNNATC 1 cut(s) 150
BseMII CTCAG 1 cut(s) 313
BseNI ACTGG 1 cut(s) 31
BseXI GCAGC 1 cut(s) 245
BshFI GGCC 1 cut(s) 209
BslFI GGGAC 1 cut(s) 229
BsmFI GGGAC 1 cut(s) 229
BsmI GAATGC 1 cut(s) 414
BsnI GGCC 1 cut(s) 209
Bsp1407I TGTACA 1 cut(s) 268
Bsp143I GATC 2 cut(s) 145, 178
BspANI GGCC 1 cut(s) 209
BspCNI CTCAG 1 cut(s) 312
BspLI GGNNCC 1 cut(s) 180
BspPI GGATC 3 cut(s) 140, 173, 186
BsrGI TGTACA 1 cut(s) 268
BsrI ACTGG 1 cut(s) 31
BssMI GATC 2 cut(s) 145, 178
BstAUI TGTACA 1 cut(s) 268
BstDEI CTNAG 1 cut(s) 299
BstEII GGTNACC 1 cut(s) 344
BstF5I GGATG 2 cut(s) 151, 271
BstKTI GATC 2 cut(s) 148, 181
BstMBI GATC 2 cut(s) 145, 178
BstMWI GCNNNNNNNGC 1 cut(s) 418
BstNSI RCATGY 2 cut(s) 116, 128
BstPI GGTNACC 1 cut(s) 344
BstV1I GCAGC 1 cut(s) 245
BstV2I GAAGAC 1 cut(s) 48
BstX2I RGATCY 1 cut(s) 178
BstYI RGATCY 1 cut(s) 178
BsuRI GGCC 1 cut(s) 209
BtsCI GGATG 2 cut(s) 151, 271
Csp6I GTAC 2 cut(s) 269, 290
CviAII CATG 3 cut(s) 113, 125, 272
CviJI RGCY 3 cut(s) 209, 236, 323
CviKI_1 RGCY 3 cut(s) 209, 236, 323
CviQI GTAC 2 cut(s) 269, 290
DdeI CTNAG 1 cut(s) 299
DpnI GATC 2 cut(s) 147, 180
DpnII GATC 2 cut(s) 145, 178
EaeI YGGCCR 1 cut(s) 207
Eco57I CTGAAG 2 cut(s) 78, 447
Eco91I GGTNACC 1 cut(s) 344
EcoO65I GGTNACC 1 cut(s) 344
EcoRI GAATTC 1 cut(s) 356
FaeI CATG 3 cut(s) 116, 128, 275
FaiI YATR 9 cut(s) 7, 68, 114, 126, 230, 273, 332, 416, 418
FaqI GGGAC 1 cut(s) 229
FatI CATG 3 cut(s) 112, 124, 271
Fnu4HI GCNGC 1 cut(s) 234
FokI GGATG 2 cut(s) 138, 278
Fsp4HI GCNGC 1 cut(s) 234
FspBI CTAG 1 cut(s) 185
GluI GCNGC 1 cut(s) 234
HaeIII GGCC 1 cut(s) 209
Hin1II CATG 3 cut(s) 116, 128, 275
HinfI GANTC 1 cut(s) 100
HphI GGTGA 2 cut(s) 41, 349
Hpy166II GTNNAC 1 cut(s) 328
Hpy188I TCNGA 1 cut(s) 427
Hpy8I GTNNAC 1 cut(s) 328
HpyAV CCTTC 2 cut(s) 26, 422
HpyCH4IV ACGT 1 cut(s) 45
HpyCH4V TGCA 1 cut(s) 128
HpyF10VI GCNNNNNNNGC 1 cut(s) 418
HpyF3I CTNAG 1 cut(s) 299
HpySE526I ACGT 1 cut(s) 45
Hsp92II CATG 3 cut(s) 116, 128, 275
Kzo9I GATC 2 cut(s) 145, 178
LpnPI CCDG 1 cut(s) 12
Lsp1109I GCAGC 1 cut(s) 245
LweI GCATC 2 cut(s) 43, 373
MaeI CTAG 1 cut(s) 185
MaeII ACGT 1 cut(s) 45
MaeIII GTNAC 2 cut(s) 97, 344
MalI GATC 2 cut(s) 147, 180
MboI GATC 2 cut(s) 145, 178
MboII GAAGA 4 cut(s) 53, 71, 95, 365
MfeI CAATTG 1 cut(s) 195
MflI RGATCY 1 cut(s) 178
MlsI TGGCCA 1 cut(s) 209
MluCI AATT 7 cut(s) 71, 106, 139, 195, 224, 305, 356
MluNI TGGCCA 1 cut(s) 209
MlyI GAGTC 1 cut(s) 94
MmeI TCCRAC 1 cut(s) 28
MnlI CCTC 4 cut(s) 127, 165, 256, 308
Mox20I TGGCCA 1 cut(s) 209
MscI TGGCCA 1 cut(s) 209
MseI TTAA 1 cut(s) 378
MslI CAYNNNNRTG 1 cut(s) 335
Msp20I TGGCCA 1 cut(s) 209
MunI CAATTG 1 cut(s) 195
Mva1269I GAATGC 1 cut(s) 414
MwoI GCNNNNNNNGC 1 cut(s) 418
NdeII GATC 2 cut(s) 145, 178
NlaIII CATG 3 cut(s) 116, 128, 275
NlaIV GGNNCC 1 cut(s) 180
NmuCI GTSAC 1 cut(s) 97
NspI RCATGY 2 cut(s) 116, 128
PctI GAATGC 1 cut(s) 414
PkrI GCNGC 1 cut(s) 235
PleI GAGTC 1 cut(s) 94
PpsI GAGTC 1 cut(s) 94
PshBI ATTAAT 1 cut(s) 378
PspEI GGTNACC 1 cut(s) 344
PspN4I GGNNCC 1 cut(s) 180
PsuI RGATCY 1 cut(s) 178
RsaI GTAC 2 cut(s) 270, 291
RsaNI GTAC 2 cut(s) 269, 290
RseI CAYNNNNRTG 1 cut(s) 335
SaqAI TTAA 1 cut(s) 378
SatI GCNGC 1 cut(s) 234
Sau3AI GATC 2 cut(s) 145, 178
SchI GAGTC 1 cut(s) 94
SetI ASST 5 cut(s) 48, 218, 238, 300, 325
SfaNI GCATC 2 cut(s) 43, 373
SmiMI CAYNNNNRTG 1 cut(s) 335
SmlI CTYRAG 1 cut(s) 237
SmoI CTYRAG 1 cut(s) 237
Sse9I AATT 7 cut(s) 71, 106, 139, 195, 224, 305, 356
SspMI CTAG 1 cut(s) 185
TaiI ACGT 1 cut(s) 48
TasI AATT 7 cut(s) 71, 106, 139, 195, 224, 305, 356
TatI WGTACW 1 cut(s) 268
Tru1I TTAA 1 cut(s) 378
Tru9I TTAA 1 cut(s) 378
TseFI GTSAC 1 cut(s) 97
TseI GCWGC 1 cut(s) 233
Tsp45I GTSAC 1 cut(s) 97
TspDTI ATGAA 2 cut(s) 102, 288
VspI ATTAAT 1 cut(s) 378
XapI RAATTY 3 cut(s) 71, 224, 356
XceI RCATGY 2 cut(s) 116, 128
XspI CTAG 1 cut(s) 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.